X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkMotionMaskGenericFilter.txx;h=56fadac84f5e977f016677a0cd68bce42470e62c;hb=5c5fc58e0cbdcec1c9fdd19ec786912cb38d1722;hp=0edf047f368778f2e62a5002ce5ed5c020f3e44b;hpb=66bd2423675397defe90b79586d04cbe30dfd282;p=clitk.git

diff --git a/segmentation/clitkMotionMaskGenericFilter.txx b/segmentation/clitkMotionMaskGenericFilter.txx
old mode 100755
new mode 100644
index 0edf047..56fadac
--- a/segmentation/clitkMotionMaskGenericFilter.txx
+++ b/segmentation/clitkMotionMaskGenericFilter.txx
@@ -3,7 +3,7 @@
 
   Authors belong to:
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,7 +14,7 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
 #ifndef clitkMotionMaskGenericFilter_txx
 #define clitkMotionMaskGenericFilter_txx
 
@@ -377,6 +377,8 @@ MotionMaskGenericFilter::GetLungsImage(typename itk::Image<PixelType, Dimension>
     connectFilter->SetBackgroundValue(0);
     connectFilter->SetFullyConnected(true);
     if (m_Verbose) std::cout<<"Labeling the connected components..."<<std::endl;
+    connectFilter->Update();
+    if (m_Verbose) std::cout<<"found "<< connectFilter->GetObjectCount() << std::endl;
 
     //---------------------------------
     // Sort the labels according to size
@@ -384,7 +386,7 @@ MotionMaskGenericFilter::GetLungsImage(typename itk::Image<PixelType, Dimension>
     typename RelabelFilterType::Pointer relabelFilter=RelabelFilterType::New();
     relabelFilter->SetInput(connectFilter->GetOutput());
     if (m_Verbose) std::cout<<"Sorting the labels..."<<std::endl;
-    // writeImage<InternalImageType> (relabelFilter->GetOutput(), "/home/jef/tmp/labels.mhd");
+    // writeImage<InternalImageType> (relabelFilter->GetOutput(), "/home/vdelmon/tmp/labels.mhd");
 
     //---------------------------------
     // Keep the label
@@ -944,6 +946,10 @@ MotionMaskGenericFilter::UpdateWithDimAndPixelType()
     distanceMapImageFilter->SetInsideIsPositive(false);
     if (m_Verbose) std::cout<<"Calculating the distance map..."<<std::endl;
     distanceMapImageFilter->Update();
+    if (m_ArgsInfo.writeDistMap_given) {
+      writeImage<LevelSetImageType>(distanceMapImageFilter->GetOutput(), m_ArgsInfo.writeDistMap_arg, m_Verbose);
+      
+    }
 
     //---------------------------------
     // Grow while monitoring detection point