X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkRegionGrowing.ggo;h=cd2d03e22c6cc4be5cd5a8bc3b2e08ab4837fffd;hb=2d9ef51e893a0b5b93d44a88594c9c76e4b61239;hp=921c332ec943ce0262273a51c333b7c56ef89865;hpb=2f5b335da5621bdfc86cb594cc667d0929f4d8e3;p=clitk.git

diff --git a/segmentation/clitkRegionGrowing.ggo b/segmentation/clitkRegionGrowing.ggo
old mode 100755
new mode 100644
index 921c332..cd2d03e
--- a/segmentation/clitkRegionGrowing.ggo
+++ b/segmentation/clitkRegionGrowing.ggo
@@ -1,7 +1,7 @@
 #File clitkRegionGrowing.ggo
-Package "clitkRegionGrowing"
+package "clitkRegionGrowing"
 version "1.0"
-purpose "Region growing from a seed point"
+purpose "Region growing from a seed point using various types of conditions to control the growing"
 
 option "config"	  	-	"Config file"			  string  	no
 option "verbose"   	v   	"Verbose"			  flag		off
@@ -15,8 +15,8 @@ option "output"    	o   	"Output image filename"		  string 	yes
 section "Parameters"
 
 option "type"		t	"Region growing filter type: 0=threshold , 1=neighborhood-threshold , 2=confidence , 3= locally-adaptive-threshold, 4= explosion-controlled-threshold" int	no	default="0"
-option "lower"    	l   	"1,2,3,4: Lower threshold value"		  double	no	default="0"
-option "upper"    	u   	"1,2,3,4: Upper threshold value"		  double 	no	default="1"
+option "lower"    	l   	"1,2,3,4: Lower threshold value"		  double	no	default="310"
+option "upper"    	u   	"1,2,3,4: Upper threshold value"		  double 	no	default="4000"
 option "maxUpper"    	-   	"4: Maximum upper threshold value"		  double 	no	default="2000"
 option "minLower"    	-   	"4: Minimum lower threshold value"		  double 	no	default="-1000"
 option "step"    	-   	"4: Threshold step size"			  double 	no	default="64.0"
@@ -25,6 +25,7 @@ option "adaptLower" 	-   	"3,4: (locally) adapt lower thresholding"	  flag 		off
 option "adaptUpper" 	-   	"3,4: (locally) adapt upper thresholding"	  flag 		off
 option "multiplier"    	m   	"2-4: (2-3) accept if within mean+-mutiplier*SD, (4) explosion if size increases multiplier times"	double	no	default="2.0"
 option "seed"    	s   	"Seed index postion (in voxels)"	  	  int 		multiple 	no	default="0"	
+option "seedRadius"    	-   	"Radius used for seed dilatation(in voxel)"	  int 		multiple 	no	default="0"	
 option "pad"    	p   	"The replace padding value"	  		  double 	no		default="1.0"	
 option "radius"    	r   	"1-3: The radius of the neighborhood"  		  int		no		multiple 	default="1"
 option "maxSD"		-	"3: Limit to SD"				  double	no