X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkRegionGrowing.ggo;h=d71aa47dd7d9b38118a2af5929536d64a1e3b5d5;hb=ffcb9f130fcbcc690702c2d174d3fdb57a58671a;hp=f1d237369ef7bf3b7c6659c6bfc199bd4f93a52e;hpb=41e04b9629105d52b2241a1f7008ffd440ea7e46;p=clitk.git diff --git a/segmentation/clitkRegionGrowing.ggo b/segmentation/clitkRegionGrowing.ggo old mode 100755 new mode 100644 index f1d2373..d71aa47 --- a/segmentation/clitkRegionGrowing.ggo +++ b/segmentation/clitkRegionGrowing.ggo @@ -1,33 +1,34 @@ #File clitkRegionGrowing.ggo -Package "clitkRegionGrowing" +package "clitkRegionGrowing" version "1.0" purpose "Region growing from a seed point using various types of conditions to control the growing" -option "config" - "Config file" string no -option "verbose" v "Verbose" flag off +option "config" - "Config file" string no +option "verbose" v "Verbose" flag off section "I/O" -option "input" i "Input image filename" string yes -option "output" o "Output image filename" string yes +option "input" i "Input image filename" string yes +option "output" o "Output image filename" string yes section "Parameters" -option "type" t "Region growing filter type: 0=threshold , 1=neighborhood-threshold , 2=confidence , 3= locally-adaptive-threshold, 4= explosion-controlled-threshold" int no default="0" -option "lower" l "1,2,3,4: Lower threshold value" double no default="0" -option "upper" u "1,2,3,4: Upper threshold value" double no default="1" -option "maxUpper" - "4: Maximum upper threshold value" double no default="2000" -option "minLower" - "4: Minimum lower threshold value" double no default="-1000" -option "step" - "4: Threshold step size" double no default="64.0" -option "minStep" - "4: Minimum threshold step size" double no default="1" -option "adaptLower" - "3,4: (locally) adapt lower thresholding" flag off -option "adaptUpper" - "3,4: (locally) adapt upper thresholding" flag off -option "multiplier" m "2-4: (2-3) accept if within mean+-mutiplier*SD, (4) explosion if size increases multiplier times" double no default="2.0" -option "seed" s "Seed index postion (in voxels)" int multiple no default="0" -option "pad" p "The replace padding value" double no default="1.0" -option "radius" r "1-3: The radius of the neighborhood" int no multiple default="1" -option "maxSD" - "3: Limit to SD" double no -option "full" - "4: use full connectivity (not implemented yet)" flag off -option "iter" - "2: Iterations" int no default="5" - +option "type" t "Region growing filter type: 0=threshold , 1=neighborhood-threshold , 2=confidence , 3=locally-adaptive-threshold, 4=explosion-controlled-threshold" int no default="0" +option "lower" l "Lower threshold value" double no default="310" +option "upper" u "Upper threshold value" double no default="4000" +option "seed" s "Seed index postion (in voxels)" int no default="0" multiple +option "seedRadius" - "Radius used for seed dilatation(in voxel)" int no default="0" multiple +option "pad" p "The replace padding value" double no default="1.0" +option "radius" r "1-3: The radius of the neighborhood" int no default="1" multiple +option "iter" - "2: Iterations" int no default="5" +option "multiplier" m "2-4: (2-3) accept if within mean+-mutiplier*SD, (4) explosion if size increases multiplier times" double no default="2.0" +option "maxSD" - "3: Limit to SD" double no +option "adaptLower" - "3,4: (locally) adapt lower thresholding" flag off +option "adaptUpper" - "3,4: (locally) adapt upper thresholding" flag off +option "maxUpper" - "4: Maximum upper threshold value" double no default="2000" +option "minLower" - "4: Minimum lower threshold value" double no default="-1000" +option "step" - "4: Threshold step size" double no default="64.0" +option "minStep" - "4: Minimum threshold step size" double no default="1" +option "full" - "4: use full connectivity (not implemented yet)" flag off +