X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=src%2FcreaImageIOWxISimpleDlg.hpp;h=3b70726dab880476230d7ce88bfccb9b1f6c9ee9;hb=1be6b124bc950f4d6734c241ce591d662bf3efbc;hp=036b1eed61eb23f76e3bf1c9f37bd9a9ea1346bf;hpb=f0ea0ed08cb1c62f6cad04fdf405258f96283dc7;p=creaImageIO.git diff --git a/src/creaImageIOWxISimpleDlg.hpp b/src/creaImageIOWxISimpleDlg.hpp index 036b1ee..3b70726 100644 --- a/src/creaImageIOWxISimpleDlg.hpp +++ b/src/creaImageIOWxISimpleDlg.hpp @@ -1,3 +1,35 @@ +/* +# --------------------------------------------------------------------- +# +# Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image +# pour la Santé) +# Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton +# Previous Authors : Laurent Guigues, Jean-Pierre Roux +# CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil +# +# This software is governed by the CeCILL-B license under French law and +# abiding by the rules of distribution of free software. You can use, +# modify and/ or redistribute the software under the terms of the CeCILL-B +# license as circulated by CEA, CNRS and INRIA at the following URL +# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html +# or in the file LICENSE.txt. +# +# As a counterpart to the access to the source code and rights to copy, +# modify and redistribute granted by the license, users are provided only +# with a limited warranty and the software's author, the holder of the +# economic rights, and the successive licensors have only limited +# liability. +# +# The fact that you are presently reading this means that you have had +# knowledge of the CeCILL-B license and that you accept its terms. +# ------------------------------------------------------------------------ +*/ + + +#ifndef __creaImageIOWxSimpleDlg_hpp_INCLUDED__ +#define __creaImageIOWxSimpleDlg_hpp_INCLUDED__ + + //#include "creaImageIOWxISimpleDlg.h" #include "creaImageIOWxGimmickReaderDialog.h" @@ -215,156 +247,164 @@ namespace creaImageIO ////////////////////////////////////////////////////////////////////// // Return the results vector // ////////////////////////////////////////////////////////////////////// - template - std::vector WxISimpleDlg::getImagesSelected() - { - return m_Iresults; - } + template + std::vector WxISimpleDlg::getImagesSelected() + { + return m_Iresults; + } - template - void WxISimpleDlg::readImg(const std::string &i_name) - { - // FCY : just to check but not needed, we hardly suppose that we load only same type and dim of images - // uncomment to test - /*typedef itk::ImageIOBase::IOComponentType ScalarPixelType; - itk::ImageIOBase::Pointer imageIO = itk::ImageIOFactory::CreateImageIO(i_name.c_str(), itk::ImageIOFactory::ReadMode); - imageIO->SetFileName(i_name.c_str()); - imageIO->ReadImageInformation(); - ScalarPixelType pixelType = imageIO->GetComponentType(); - const size_t dims = imageIO->GetNumberOfDimensions();*/ - - typedef itk::ImageFileReader ReaderType; - typename ReaderType::Pointer reader = ReaderType::New(); - reader->SetFileName( i_name ); - try - { - reader->Update(); - } - catch( itk::ExceptionObject & err ) - { - std::cout << "Caught an exception reading" << i_name << ": " << std::endl; - std::cout << err << " " << __FILE__ << " " << __LINE__ << std::endl; - throw err; - } - catch(...) - { - std::cout << "Error while reading image " << i_name << std::endl; - throw; - } - m_Iresults.push_back(reader->GetOutput()); - } + template + void WxISimpleDlg::readImg(const std::string &i_name) + { + // FCY : just to check but not needed, we hardly suppose that we load only same type and dim of images + // uncomment to test + /*typedef itk::ImageIOBase::IOComponentType ScalarPixelType; + itk::ImageIOBase::Pointer imageIO = itk::ImageIOFactory::CreateImageIO(i_name.c_str(), itk::ImageIOFactory::ReadMode); + imageIO->SetFileName(i_name.c_str()); + imageIO->ReadImageInformation(); + ScalarPixelType pixelType = imageIO->GetComponentType(); + const size_t dims = imageIO->GetNumberOfDimensions();*/ + typedef itk::ImageFileReader ReaderType; + typename ReaderType::Pointer reader = ReaderType::New(); + reader->SetFileName( i_name ); + try + { + reader->Update(); + } + catch( itk::ExceptionObject & err ) + { + std::cout << "Caught an exception reading" << i_name << ": " << std::endl; + std::cout << err << " " << __FILE__ << " " << __LINE__ << std::endl; + throw err; + } + catch(...) + { + std::cout << "Error while reading image " << i_name << std::endl; + throw; + } + m_Iresults.push_back(reader->GetOutput()); + + } - template - void WxISimpleDlg::readDicomImg(const std::vector &i_names) - { - typedef itk::GDCMImageIO GDCMType; - typedef itk::DICOMSeriesFileNames dicnames; - GDCMType::Pointer gdcmIO = GDCMType::New(); - dicnames::Pointer generator = dicnames::New(); -// generator->SetInput(i_names); - typedef itk::ImageSeriesReader ReaderType; - typename ReaderType::Pointer reader = ReaderType::New(); - reader->SetImageIO(gdcmIO); - reader->SetFileNames(i_names); - // reader->SetFileName( i_name ); - try - { - reader->Update(); - } - catch( itk::ExceptionObject & err ) - { - // std::cout << "Caught an exception reading" << i_name << ": " << std::endl; - std::cout << err << " " << __FILE__ << " " << __LINE__ << std::endl; - throw err; - } - catch(...) - { - //std::cout << "Error while reading image " << i_name << std::endl; - throw; - } - m_Iresults.push_back(reader->GetOutput()); - } + template + void WxISimpleDlg::readDicomImg(const std::vector &i_names) + { + typedef itk::GDCMImageIO GDCMType; + typedef itk::DICOMSeriesFileNames dicnames; + GDCMType::Pointer gdcmIO = GDCMType::New(); + dicnames::Pointer generator = dicnames::New(); +// generator->SetInput(i_names); + typedef itk::ImageSeriesReader ReaderType; + typename ReaderType::Pointer reader = ReaderType::New(); + reader->SetImageIO(gdcmIO); + reader->SetFileNames(i_names); + // reader->SetFileName( i_name ); + try + { + reader->Update(); + } + catch( itk::ExceptionObject & err ) + { + // std::cout << "Caught an exception reading" << i_name << ": " << std::endl; + std::cout << err << " " << __FILE__ << " " << __LINE__ << std::endl; + throw err; + } + catch(...) + { + //std::cout << "Error while reading image " << i_name << std::endl; + throw; + } + m_Iresults.push_back(reader->GetOutput()); + + } - template - void WxISimpleDlg::split3Din3Dvtk() - { - if ((m_Iresults).size() != 0) - { - typedef itk::ImageToVTKImageFilter< TImage > ConnectorType; - ConnectorType::Pointer connector = ConnectorType::New(); - for(unsigned int i = 0 ;i < m_Iresults.size(); i++) - { - connector->SetInput(m_Iresults[i]); - connector->GetImporter()->SetDataScalarTypeToUnsignedChar(); - connector->Update(); - vtkImageData *im = vtkImageData::New(); - im->ShallowCopy(connector->GetOutput()); - im->Update(); - m_Vresults.push_back(im); - } - } - } + template + void WxISimpleDlg::split3Din3Dvtk() + { + if ((m_Iresults).size() != 0) + { + typedef itk::ImageToVTKImageFilter< TImage > ConnectorType; + ConnectorType::Pointer connector = ConnectorType::New(); + for(unsigned int i = 0 ;i < m_Iresults.size(); i++) + { + connector->SetInput(m_Iresults[i]); + connector->GetImporter()->SetDataScalarTypeToUnsignedChar(); + connector->Update(); + vtkImageData *im = vtkImageData::New(); + im->ShallowCopy(connector->GetOutput()); + im->Update(); + m_Vresults.push_back(im); + } + } + } - template - void WxISimpleDlg::split4Din3Dvtk(const std::string &i_dir) - { - if ((m_Iresults).size() != 0) - { - typename TImage::Pointer image = m_Iresults[0]; - - if(image->GetImageDimension() == 4) - { - // size of fourth dimension - int dsize = image->GetLargestPossibleRegion().GetSize(3); - // Output Type - typedef itk::Image ImageOutputType; - typedef itk::ImageSeriesWriter SeriesWriterType; - typedef itk::MetaImageIO MetaImageType; - MetaImageType::Pointer metaIO; - SeriesWriterType::Pointer seriesWriter = SeriesWriterType::New(); - - // from JPR file to generate output files - typedef itk::NumericSeriesFileNames NamesGeneratorType; - NamesGeneratorType::Pointer namesGenerator = NamesGeneratorType::New(); - namesGenerator->SetStartIndex(0); - namesGenerator->SetEndIndex(dsize-1); - namesGenerator->SetIncrementIndex(1); - std::string format = i_dir; - format += "/image%03d.mhd"; - namesGenerator->SetSeriesFormat( format.c_str() ); - - const std::vector names = namesGenerator->GetFileNames(); - seriesWriter->SetFileNames( names ); - seriesWriter->SetInput(image); - seriesWriter->SetImageIO(metaIO); - try - { - seriesWriter->Update(); - vtkMetaImageReader *vReader = vtkMetaImageReader::New(); - std::vector::const_iterator it = names.begin(); - for( ;it != names.end(); ++it) - { - vReader->SetFileName((*it).c_str()); - vReader->Update(); - m_Vresults.push_back(vReader->GetOutput()); - } - } - catch( itk::ExceptionObject & excp ) - { - std::cerr << "Exception thrown while writing the series " << std::endl; - std::cerr << excp << std::endl; - //return EXIT_FAILURE; - } - } - } - } + + template + void WxISimpleDlg::split4Din3Dvtk(const std::string &i_dir) + { + if ((m_Iresults).size() != 0) + { + typename TImage::Pointer image = m_Iresults[0]; + + if(image->GetImageDimension() == 4) + { + boost::any a1(image); + m_AnyImages.push_back(a1); + // size of fourth dimension + int dsize = image->GetLargestPossibleRegion().GetSize(3); + // Output Type + typedef itk::Image ImageOutputType; + typedef itk::ImageSeriesWriter SeriesWriterType; + typedef itk::MetaImageIO MetaImageType; + MetaImageType::Pointer metaIO; + SeriesWriterType::Pointer seriesWriter = SeriesWriterType::New(); + + // from JPR file to generate output files + typedef itk::NumericSeriesFileNames NamesGeneratorType; + NamesGeneratorType::Pointer namesGenerator = NamesGeneratorType::New(); + namesGenerator->SetStartIndex(0); + namesGenerator->SetEndIndex(dsize-1); + namesGenerator->SetIncrementIndex(1); + std::string format = i_dir; + format += "/image%03d.mhd"; + namesGenerator->SetSeriesFormat( format.c_str() ); + + const std::vector names = namesGenerator->GetFileNames(); + seriesWriter->SetFileNames( names ); + seriesWriter->SetInput(image); + seriesWriter->SetImageIO(metaIO); + try + { + seriesWriter->Update(); + vtkMetaImageReader *vReader = vtkMetaImageReader::New(); + std::vector::const_iterator it = names.begin(); + for( ;it != names.end(); ++it) + { + vReader->SetFileName((*it).c_str()); + vReader->Update(); + m_Vresults.push_back(vReader->GetOutput()); + + } + } + catch( itk::ExceptionObject & excp ) + { + std::cerr << "Exception thrown while writing the series " << std::endl; + std::cerr << excp << std::endl; + //return EXIT_FAILURE; + } + } + } + + } }// namespace end +#endif //__creaImageIOWxSimpleDlg_hpp_INCLUDED__ +