X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=src%2FcreaImageIOWxISimpleDlg.hpp;h=40553c38f78410d102af4dd2bc57e7c05f0714fa;hb=cc87ce2c00fc2ec3cc2fefc4375b53f7e16ff6fa;hp=dbbbf8d310fbbb7ffa1b27128aab61ce912acd96;hpb=69b17c9a4db1eacaf9e8ddad61154e32bd8cee21;p=creaImageIO.git

diff --git a/src/creaImageIOWxISimpleDlg.hpp b/src/creaImageIOWxISimpleDlg.hpp
index dbbbf8d..40553c3 100644
--- a/src/creaImageIOWxISimpleDlg.hpp
+++ b/src/creaImageIOWxISimpleDlg.hpp
@@ -220,156 +220,162 @@ namespace creaImageIO
     //////////////////////////////////////////////////////////////////////
     // Return the results vector                                        //
     //////////////////////////////////////////////////////////////////////
-     template <typename TImage>  
-     std::vector<typename TImage::Pointer> WxISimpleDlg<TImage>::getImagesSelected()
-      {
-          return m_Iresults;
-      }
-
-      template <typename TImage> 
-      void WxISimpleDlg<TImage>::readImg(const std::string &i_name)
-      {
-            // FCY : just to check but not needed, we hardly suppose that we load only same type and dim of images
-            // uncomment to test
-              /*typedef itk::ImageIOBase::IOComponentType ScalarPixelType;
-            itk::ImageIOBase::Pointer imageIO =  itk::ImageIOFactory::CreateImageIO(i_name.c_str(), itk::ImageIOFactory::ReadMode);
-            imageIO->SetFileName(i_name.c_str());
-            imageIO->ReadImageInformation();
-            ScalarPixelType pixelType = imageIO->GetComponentType();
-            const size_t dims =  imageIO->GetNumberOfDimensions();*/
-
-            typedef itk::ImageFileReader<TImage> ReaderType;
-            typename ReaderType::Pointer reader = ReaderType::New();
-            reader->SetFileName( i_name );
-            try
-            { 
-                reader->Update();
-            } 
-            catch( itk::ExceptionObject & err ) 
-            { 
-                std::cout << "Caught an exception reading" << i_name << ": " << std::endl; 
-                std::cout << err << " " << __FILE__ << " " << __LINE__ << std::endl; 
-                throw err; 
-            } 
-            catch(...)
-            { 
-                std::cout << "Error while reading image " << i_name << std::endl; 
-                throw; 
-            } 
-            m_Iresults.push_back(reader->GetOutput());
-      }
-
-
-
-      template <typename TImage> 
-      void WxISimpleDlg<TImage>::readDicomImg(const std::vector<std::string> &i_names)
-      {
-            typedef itk::GDCMImageIO GDCMType;
-            typedef itk::DICOMSeriesFileNames dicnames;
-            GDCMType::Pointer gdcmIO = GDCMType::New(); 
-            dicnames::Pointer generator = dicnames::New();
-//          generator->SetInput(i_names);
-            typedef itk::ImageSeriesReader<TImage> ReaderType; 
-            typename ReaderType::Pointer reader = ReaderType::New(); 
-            reader->SetImageIO(gdcmIO);
-            reader->SetFileNames(i_names);
-        //    reader->SetFileName( i_name ); 
-            try 
-            { 
-                reader->Update(); 
-            } 
-            catch( itk::ExceptionObject & err ) 
-            { 
-            //    std::cout << "Caught an exception reading" << i_name << ": " << std::endl; 
-                std::cout << err << " " << __FILE__ << " " << __LINE__ << std::endl; 
-                throw err; 
-            } 
-            catch(...) 
-            { 
-                //std::cout << "Error while reading image " << i_name << std::endl; 
-                throw; 
-            } 
-            m_Iresults.push_back(reader->GetOutput());
-      }
-
-
-
-
-      template <typename TImage> 
-      void WxISimpleDlg<TImage>::split3Din3Dvtk()
-      {
-          if ((m_Iresults).size() != 0)
-          {
-              typedef itk::ImageToVTKImageFilter<  TImage > ConnectorType;
-              ConnectorType::Pointer       connector = ConnectorType::New();
-               for(unsigned int i = 0 ;i < m_Iresults.size(); i++)
-              {
-                    connector->SetInput(m_Iresults[i]);
-                    connector->GetImporter()->SetDataScalarTypeToUnsignedChar();
-                    connector->Update();
-                    vtkImageData *im = vtkImageData::New();
-                    im->ShallowCopy(connector->GetOutput());
-                    im->Update();
-                    m_Vresults.push_back(im);
-             }
-          }
-      }
-
-
-
-      template <typename TImage> 
-      void WxISimpleDlg<TImage>::split4Din3Dvtk(const std::string &i_dir)
-      {
-            if ((m_Iresults).size() != 0)
-            {
-                typename TImage::Pointer image = m_Iresults[0];
-            
-                 if(image->GetImageDimension() == 4)
-                 {
-                     // size of fourth dimension 
-                     int dsize = image->GetLargestPossibleRegion().GetSize(3);
-                     // Output Type
-                     typedef itk::Image<unsigned char,3> ImageOutputType;  
-                     typedef itk::ImageSeriesWriter<TImage, ImageOutputType >  SeriesWriterType;
-                     typedef itk::MetaImageIO MetaImageType;
-                     MetaImageType::Pointer metaIO;
-                     SeriesWriterType::Pointer seriesWriter = SeriesWriterType::New();
-            
-                     // from JPR file to generate output files
-                     typedef itk::NumericSeriesFileNames NamesGeneratorType;
-                     NamesGeneratorType::Pointer namesGenerator = NamesGeneratorType::New();
-                     namesGenerator->SetStartIndex(0);
-                     namesGenerator->SetEndIndex(dsize-1); 
-                     namesGenerator->SetIncrementIndex(1);
-                     std::string format = i_dir;
-                     format += "/image%03d.mhd";
-                     namesGenerator->SetSeriesFormat( format.c_str() );
-                    
-                     const std::vector<std::string> names = namesGenerator->GetFileNames();
-                     seriesWriter->SetFileNames( names );
-                     seriesWriter->SetInput(image);
-                     seriesWriter->SetImageIO(metaIO);
-                     try
-                     {
-                        seriesWriter->Update();
-                        vtkMetaImageReader *vReader = vtkMetaImageReader::New();
-                        std::vector<std::string>::const_iterator it = names.begin();
-                        for( ;it !=  names.end(); ++it)
-                        {
-                            vReader->SetFileName((*it).c_str());
-                            vReader->Update();
-                            m_Vresults.push_back(vReader->GetOutput());
-                        }
-                    }
-                    catch( itk::ExceptionObject & excp )
-                    {
-                        std::cerr << "Exception thrown while writing the series " << std::endl;
-                        std::cerr << excp << std::endl;
-                        //return EXIT_FAILURE;
-                    }
-                 }
-              }
-      }
+	 template <typename TImage>  
+	 std::vector<typename TImage::Pointer> WxISimpleDlg<TImage>::getImagesSelected()
+	  {
+		  return m_Iresults;
+	  }
+
+	  template <typename TImage> 
+	  void WxISimpleDlg<TImage>::readImg(const std::string &i_name)
+	  {
+		    // FCY : just to check but not needed, we hardly suppose that we load only same type and dim of images
+		    // uncomment to test
+		  	/*typedef itk::ImageIOBase::IOComponentType ScalarPixelType;
+			itk::ImageIOBase::Pointer imageIO =  itk::ImageIOFactory::CreateImageIO(i_name.c_str(), itk::ImageIOFactory::ReadMode);
+		    imageIO->SetFileName(i_name.c_str());
+			imageIO->ReadImageInformation();
+			ScalarPixelType pixelType = imageIO->GetComponentType();
+			const size_t dims =  imageIO->GetNumberOfDimensions();*/
+
+			typedef itk::ImageFileReader<TImage> ReaderType; 
+		    typename ReaderType::Pointer reader = ReaderType::New(); 
+			reader->SetFileName( i_name ); 
+			try 
+			{ 
+				reader->Update(); 
+			} 
+			catch( itk::ExceptionObject & err ) 
+			{ 
+				std::cout << "Caught an exception reading" << i_name << ": " << std::endl; 
+				std::cout << err << " " << __FILE__ << " " << __LINE__ << std::endl; 
+				throw err; 
+			} 
+			catch(...) 
+			{ 
+				std::cout << "Error while reading image " << i_name << std::endl; 
+				throw; 
+			} 
+			m_Iresults.push_back(reader->GetOutput()); 
+    
+	  }
+
+
+
+	  template <typename TImage> 
+	  void WxISimpleDlg<TImage>::readDicomImg(const std::vector<std::string> &i_names)
+	  {
+		  typedef itk::GDCMImageIO GDCMType;
+		  typedef itk::DICOMSeriesFileNames dicnames;
+		  GDCMType::Pointer gdcmIO = GDCMType::New(); 
+		  dicnames::Pointer generator = dicnames::New();
+//		  generator->SetInput(i_names);
+			typedef itk::ImageSeriesReader<TImage> ReaderType; 
+		    typename ReaderType::Pointer reader = ReaderType::New(); 
+			reader->SetImageIO(gdcmIO);
+			reader->SetFileNames(i_names);
+		//	reader->SetFileName( i_name ); 
+			try 
+			{ 
+				reader->Update(); 
+			} 
+			catch( itk::ExceptionObject & err ) 
+			{ 
+			//	std::cout << "Caught an exception reading" << i_name << ": " << std::endl; 
+				std::cout << err << " " << __FILE__ << " " << __LINE__ << std::endl; 
+				throw err; 
+			} 
+			catch(...) 
+			{ 
+				//std::cout << "Error while reading image " << i_name << std::endl; 
+				throw; 
+			} 
+			m_Iresults.push_back(reader->GetOutput()); 
+    
+	  }
+
+
+
+
+	  template <typename TImage> 
+	  void WxISimpleDlg<TImage>::split3Din3Dvtk()
+	  {
+		  if ((m_Iresults).size() != 0)
+		  {
+			  typedef itk::ImageToVTKImageFilter<  TImage > ConnectorType;
+			  ConnectorType::Pointer 	  connector = ConnectorType::New();
+     	      for(unsigned int i = 0 ;i < m_Iresults.size(); i++)
+		      {
+					connector->SetInput(m_Iresults[i]);
+					connector->GetImporter()->SetDataScalarTypeToUnsignedChar();
+					connector->Update();
+					vtkImageData *im = vtkImageData::New();
+					im->ShallowCopy(connector->GetOutput());
+					im->Update();
+					m_Vresults.push_back(im);
+		     }
+		  }
+	  }
+
+
+
+	  template <typename TImage> 
+	  void WxISimpleDlg<TImage>::split4Din3Dvtk(const std::string &i_dir)
+	  {
+			if ((m_Iresults).size() != 0)
+			{
+			    typename TImage::Pointer image = m_Iresults[0];
+			
+				 if(image->GetImageDimension() == 4)
+				 {
+							boost::any a1(image);
+							m_AnyImages.push_back(a1);
+					 // size of fourth dimension 
+					 int dsize = image->GetLargestPossibleRegion().GetSize(3);
+					 // Output Type
+					 typedef itk::Image<unsigned char,3> ImageOutputType;  
+					 typedef itk::ImageSeriesWriter<TImage, ImageOutputType >  SeriesWriterType;
+					 typedef itk::MetaImageIO MetaImageType;
+					 MetaImageType::Pointer metaIO;
+					 SeriesWriterType::Pointer seriesWriter = SeriesWriterType::New();
+			
+					 // from JPR file to generate output files
+					 typedef itk::NumericSeriesFileNames NamesGeneratorType;
+					 NamesGeneratorType::Pointer namesGenerator = NamesGeneratorType::New();
+					 namesGenerator->SetStartIndex(0);
+					 namesGenerator->SetEndIndex(dsize-1); 
+					 namesGenerator->SetIncrementIndex(1);
+					 std::string format = i_dir;
+					 format += "/image%03d.mhd";
+					 namesGenerator->SetSeriesFormat( format.c_str() );
+					
+					 const std::vector<std::string> names = namesGenerator->GetFileNames();
+					 seriesWriter->SetFileNames( names );
+					 seriesWriter->SetInput(image);
+		  			 seriesWriter->SetImageIO(metaIO);
+					 try
+					{
+						seriesWriter->Update();
+						vtkMetaImageReader *vReader = vtkMetaImageReader::New();
+						std::vector<std::string>::const_iterator it = names.begin();
+						for( ;it !=  names.end(); ++it)
+						{
+							vReader->SetFileName((*it).c_str());
+							vReader->Update();
+							m_Vresults.push_back(vReader->GetOutput());
+							
+						}
+					}
+					catch( itk::ExceptionObject & excp )
+					{
+						std::cerr << "Exception thrown while writing the series " << std::endl;
+						std::cerr << excp << std::endl;
+						//return EXIT_FAILURE;
+					}
+				 }
+			  }
+
+	  }
 
  }// namespace end