X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=src%2FgdcmDicomDir.cxx;h=9d44e72ffd059bf0158c9edb68b418f52b86796d;hb=56ad78cdf3b5de32f0a94a38cd32ddc9f403ffc3;hp=a12b7fa7fed62d2c95a81c59573bb3c84afabafd;hpb=83d626ec3d3111a6d14586246b6e2dda56f0ab86;p=gdcm.git diff --git a/src/gdcmDicomDir.cxx b/src/gdcmDicomDir.cxx index a12b7fa7..9d44e72f 100644 --- a/src/gdcmDicomDir.cxx +++ b/src/gdcmDicomDir.cxx @@ -3,8 +3,8 @@ Program: gdcm Module: $RCSfile: gdcmDicomDir.cxx,v $ Language: C++ - Date: $Date: 2006/01/27 10:01:33 $ - Version: $Revision: 1.185 $ + Date: $Date: 2008/02/13 18:53:33 $ + Version: $Revision: 1.197 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or @@ -26,6 +26,7 @@ #include "gdcmDicomDirSerie.h" #include "gdcmDicomDirVisit.h" #include "gdcmDicomDirImage.h" +#include "gdcmDicomDirPrivate.h" #include "gdcmDicomDirPatient.h" #include "gdcmDicomDirMeta.h" #include "gdcmDicomDirElement.h" @@ -56,7 +57,7 @@ #if defined(__BORLANDC__) #include // for memset -#endif +#endif // ---------------------------------------------------------------------------- // Note for future developpers @@ -101,6 +102,64 @@ // PRIVATE // ENCAP DOC // + +/* + +// see also : ftp://medical.nema.org/medical/dicom/final/cp343_ft.doc + +RELATIONSHIP BETWEEN DIRECTORY RECORDS + +Directory Record Type Directory Record Types which may be included + in the next lower-level directory Entity + +(Root Directory Entity) PATIENT, TOPIC, PRIVATE + +PATIENT STUDY, PRIVATE + +STUDY SERIES, VISIT, RESULTS, STUDY COMPONENT, PRIVATE + +SERIES IMAGE, OVERLAY, MODALITY LUT, VOI LUT, CURVE, + STORED PRINT, RT DOSE, RT STRUCTURE SET, RT PLAN, + RT TREAT RECORD, PRESENTATION, WAVEFORM, SR DOCUMENT, + KEY OBJECT DOC, SPECTROSCOPY, RAW DATA, PRIVATE + +IMAGE PRIVATE +OVERLAY PRIVATE +MODALITY LUT PRIVATE +VOI LUT PRIVATE +CURVE PRIVATE +STORED PRINT PRIVATE +RT DOSE PRIVATE +RT STRUCTURE SET PRIVATE +RT PLAN PRIVATE +RT TREAT RECORD PRIVATE +PRESENTATION PRIVATE +WAVEFORM PRIVATE +SR DOCUMENT PRIVATE +KEY OBJECT DOC PRIVATE +SPECTROSCOPY PRIVATE +RAW DATA PRIVATE + +TOPIC STUDY, SERIES, IMAGE, OVERLAY, MODALITY LUT, VOI LUT, + CURVE, STORED PRINT, RT DOSE, RT STRUCTURE SET, + RT PLAN, RT TREAT RECORD, PRESENTATION, WAVEFORM, + SR DOCUMENT, KEY OBJECT DOC, SPECTROSCOPY, RAW DATA, + PRIVATE + +VISIT PRIVATE + +RESULTS INTERPRETATION, PRIVATE + +INTERPRETATION PRIVATE +STUDY COMPONENT PRIVATE +PRIVATE PRIVATE, (any of the above as privately defined) +MRDR (Not applicable) + +Note : Directory Record Types PRINT QUEUE, FILM SESSION, FILM BOX, and + IMAGE BOX were previously defined in DICOM. They have been retired. + See PS 3.3-1998. +*/ + // ---------------------- // The current gdcm version only deals with : // @@ -115,7 +174,7 @@ // Treelike structure management will have to be upgraded // ---------------------------------------------------------------------------- -namespace gdcm +namespace GDCM_NAME_SPACE { //----------------------------------------------------------------------------- // Constructor / Destructor @@ -129,6 +188,38 @@ DicomDir::DicomDir() NewMeta(); } +//#ifndef GDCM_LEGACY_REMOVE +/** + * \brief Constructor Parses recursively the directory and creates the DicomDir + * or uses an already built DICOMDIR, depending on 'parseDir' value. + * @param fileName name + * - of the root directory (parseDir = true) + * - of the DICOMDIR (parseDir = false) + * @param parseDir boolean + * - true if user passed an entry point + * and wants to explore recursively the directories + * - false if user passed an already built DICOMDIR file + * and wants to use it + * @deprecated use : new DicomDir() + [ SetLoadMode(lm) + ] SetDirectoryName(name) + * or : new DicomDir() + SetFileName(name) + */ + /* +DicomDir::DicomDir(std::string const &fileName, bool parseDir ): + Document( ) +{ + // At this step, Document constructor is already executed, + // whatever user passed (either a root directory or a DICOMDIR) + // and whatever the value of parseDir was. + // (nothing is checked in Document constructor, to avoid overhead) + + ParseDir = parseDir; + SetLoadMode (LD_ALL); // concerns only dicom files + SetFileName( fileName ); + Load( ); +} +*/ +//#endif + /** * \brief Canonical destructor */ @@ -159,6 +250,30 @@ bool DicomDir::Load( ) } return DoTheLoadingJob( ); } +//#ifndef GDCM_LEGACY_REMOVE +/** + * \brief Loader. (DEPRECATED : kept not to break the API) + * @param fileName file to be open for parsing + * @return false if file cannot be open or no swap info was found, + * or no tag was found. + * @deprecated use SetFileName(n) + Load() instead + */ + /* +bool DicomDir::Load(std::string const &fileName ) +{ + // We should clean out anything that already exists. + Initialize(); // sets all private fields to NULL + + SetFileName( fileName ); + if (!ParseDir) + { + if ( ! this->Document::Load( ) ) + return false; + } + return DoTheLoadingJob( ); +} +*/ +//#endif /** * \brief Does the Loading Job (internal use only) @@ -194,7 +309,9 @@ bool DicomDir::DoTheLoadingJob( ) return false; } else + { CreateDicomDir(); + } } else { @@ -208,11 +325,11 @@ bool DicomDir::DoTheLoadingJob( ) const char *cwd = getcwd(buf, 2048); if( cwd ) { - SetFileName( buf ); // will be converted into a string + SetFileName( buf ); // will be converted into a string } else { - gdcmErrorMacro( "Path was too long to fit on 2048 bytes" ); + gdcmErrorMacro( "Path was too long to fit on 2048 bytes" ); } } NewMeta(); @@ -258,8 +375,9 @@ bool DicomDir::IsReadable() DicomDirMeta *DicomDir::NewMeta() { if ( MetaElems ) + { MetaElems->Delete(); - + } DocEntry *entry = GetFirstEntry(); if ( entry ) { @@ -362,7 +480,7 @@ bool DicomDir::Write(std::string const &fileName) std::ofstream *fp = new std::ofstream(fileName.c_str(), std::ios::out | std::ios::binary); - if ( !fp ) + if ( !fp ) { gdcmWarningMacro("Failed to open(write) File: " << fileName.c_str()); return false; @@ -374,7 +492,7 @@ bool DicomDir::Write(std::string const &fileName) binary_write( *fp, "DICM"); DicomDirMeta *ptrMeta = GetMeta(); - ptrMeta->WriteContent(fp, ExplicitVR); + ptrMeta->WriteContent(fp, ExplicitVR, true, false); // force writing 0004|1220 [SQ ], that CANNOT exist within DicomDirMeta for(i=0;i<6;++i) @@ -386,7 +504,7 @@ bool DicomDir::Write(std::string const &fileName) cc != Patients.end(); ++cc ) { - (*cc)->WriteContent( fp, ExplicitVR ); + (*cc)->WriteContent( fp, ExplicitVR, false, true ); } // force writing Sequence Delimitation Item @@ -549,6 +667,7 @@ void DicomDir::CreateDicomDir() { // The SeqEntries of "Directory Record Sequence" are parsed. // When a DicomDir tag ("PATIENT", "STUDY", "SERIE", "IMAGE") is found : + // N.B. : VISIT, PRIVATE not fully dealt with // 1 - we save the beginning iterator // 2 - we continue to parse // 3 - we find an other tag @@ -597,7 +716,7 @@ void DicomDir::CreateDicomDir() if ( v == "IMAGE " ) { - si = DicomDirImage::New(true); + si = DicomDirImage::New(true); // true = empty if ( !AddImageToEnd( static_cast(si)) ) { si->Delete(); @@ -607,7 +726,7 @@ void DicomDir::CreateDicomDir() } else if ( v == "SERIES" ) { - si = DicomDirSerie::New(true); + si = DicomDirSerie::New(true); // true = empty if ( !AddSerieToEnd( static_cast(si)) ) { si->Delete(); @@ -617,7 +736,7 @@ void DicomDir::CreateDicomDir() } else if ( v == "VISIT " ) { - si = DicomDirVisit::New(true); + si = DicomDirVisit::New(true); // true = empty if ( !AddVisitToEnd( static_cast(si)) ) { si->Delete(); @@ -627,7 +746,7 @@ void DicomDir::CreateDicomDir() } else if ( v == "STUDY " ) { - si = DicomDirStudy::New(true); + si = DicomDirStudy::New(true); // true = empty if ( !AddStudyToEnd( static_cast(si)) ) { si->Delete(); @@ -637,7 +756,7 @@ void DicomDir::CreateDicomDir() } else if ( v == "PATIENT " ) { - si = DicomDirPatient::New(true); + si = DicomDirPatient::New(true); // true = empty if ( !AddPatientToEnd( static_cast(si)) ) { si->Delete(); @@ -645,12 +764,28 @@ void DicomDir::CreateDicomDir() gdcmErrorMacro( "Add PatientToEnd failed"); } } + /// \todo : deal with PRIVATE (not so easy, since PRIVATE appears + /// at different levels ?!? ) + + else if ( v == "PRIVATE " ) // for SIEMENS 'CSA Non Image' + { + + gdcmWarningMacro( " -------------------------------------------" + << "a PRIVATE SQItem was found : " << v); + si = DicomDirPrivate::New(true); // true = empty + if ( !AddPrivateToEnd( static_cast(si)) ) + { + si->Delete(); + si = NULL; + gdcmErrorMacro( "Add PrivateToEnd failed"); + } + } else { // It was neither a 'PATIENT', nor a 'STUDY', nor a 'SERIE', // nor an 'IMAGE' SQItem. Skip to next item. - gdcmDebugMacro( " -------------------------------------------" - << "a non PATIENT/STUDY/SERIE/IMAGE SQItem was found : " + gdcmWarningMacro( " -------------------------------------------" + << "a non PATIENT/STUDY/SERIE/IMAGE /VISIT/PRIVATE SQItem was found : " << v); // FIXME : deal with other item types ! @@ -757,6 +892,32 @@ bool DicomDir::AddImageToEnd(DicomDirImage *dd) return false; } +/** + * \brief AddPrivateToEnd + * @param dd SQ Item to enqueue to the DicomDirPrivate chained List + * (checked for SIEMENS 'CSA non image') + */ +bool DicomDir::AddPrivateToEnd(DicomDirPrivate *dd) +{ + if ( Patients.size() > 0 ) + { + ListDicomDirPatient::iterator itp = Patients.end(); + itp--; + + DicomDirStudy *study = (*itp)->GetLastStudy(); + if ( study ) + { + DicomDirSerie *serie = study->GetLastSerie(); + if ( serie ) + { + serie->AddPrivate(dd); + return true; + } + } + } + return false; +} + /** * \brief for each Header of the chained list, * add/update the Patient/Study/Serie/Image info @@ -837,11 +998,10 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, ListDicomDirElem elemList; ListDicomDirElem::const_iterator it; uint16_t tmpGr, tmpEl; - DictEntry *dictEntry; + //DictEntry *dictEntry; DataEntry *entry; std::string val; SQItem *si; - switch( type ) { case GDCM_DICOMDIR_IMAGE: @@ -880,7 +1040,7 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, gdcmErrorMacro( "Add PatientToEnd failed"); } break; - case GDCM_DICOMDIR_META: + case GDCM_DICOMDIR_META: // never used ?!? --> Done within DoTheLoadingJob if ( MetaElems ) { MetaElems->Delete(); @@ -893,9 +1053,9 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, default: return; } - + // FIXME : troubles found when it's a SeqEntry - + // removed all the seems-to-be-useless stuff about Referenced Image Sequence // to avoid further troubles // imageElem 0008 1140 "" // Referenced Image Sequence @@ -910,17 +1070,15 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, { tmpGr = it->Group; tmpEl = it->Elem; - dictEntry = GetPubDict()->GetEntry(tmpGr, tmpEl); - - entry = DataEntry::New( dictEntry ); + + entry = DataEntry::New(tmpGr, tmpEl, it->VR); // dicomelements file was modified, to store VR entry->SetOffset(0); // just to avoid further missprinting if ( header ) { // NULL when we Build Up (ex nihilo) a DICOMDIR // or when we add the META elems - - val = header->GetEntryString(tmpGr, tmpEl); + val = header->GetEntryString(tmpGr, tmpEl); } else { @@ -928,7 +1086,7 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, } if ( val == GDCM_UNFOUND) - { + { if ( tmpGr == 0x0004 ) // never present in File ! { switch (tmpEl)