X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=src%2FgdcmDicomDir.cxx;h=a7132a903e3901e2a536667c4078dbc844ed5d92;hb=f3cc252fad08c3e8dbc395f2ca7cabf47bf95302;hp=467f639478011a104eb214f8a761a5ef4b0b76fa;hpb=e9d0fe99cef1e82bbc29c6dd5f65f7c1ccbd3412;p=gdcm.git diff --git a/src/gdcmDicomDir.cxx b/src/gdcmDicomDir.cxx index 467f6394..a7132a90 100644 --- a/src/gdcmDicomDir.cxx +++ b/src/gdcmDicomDir.cxx @@ -3,8 +3,8 @@ Program: gdcm Module: $RCSfile: gdcmDicomDir.cxx,v $ Language: C++ - Date: $Date: 2005/06/17 12:36:07 $ - Version: $Revision: 1.141 $ + Date: $Date: 2005/08/30 15:13:09 $ + Version: $Revision: 1.157 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or @@ -21,8 +21,10 @@ // PS 3.3-2003, pages 731-750 //----------------------------------------------------------------------------- #include "gdcmDicomDir.h" +#include "gdcmDicomDirObject.h" #include "gdcmDicomDirStudy.h" #include "gdcmDicomDirSerie.h" +#include "gdcmDicomDirVisit.h" #include "gdcmDicomDirImage.h" #include "gdcmDicomDirPatient.h" #include "gdcmDicomDirMeta.h" @@ -98,7 +100,8 @@ // // (Root directory Entity) PATIENT // PATIENT STUDY -// STUDY SERIES +// STUDY SERIES +// STUDY VISIT // SERIES IMAGE // IMAGE / // @@ -117,9 +120,11 @@ DicomDir::DicomDir() :Document( ) { Initialize(); // sets all private fields to NULL + ParseDir = false; NewMeta(); } +#ifndef GDCM_LEGACY_REMOVE /** * \brief Constructor Parses recursively the directory and creates the DicomDir * or uses an already built DICOMDIR, depending on 'parseDir' value. @@ -131,6 +136,8 @@ DicomDir::DicomDir() * and wants to explore recursively the directories * - false if user passed an already built DICOMDIR file * and wants to use it + * @deprecated use : new DicomDir() + [ SetLoadMode(lm) + ] SetDirectoryName(name) + * or : new DicomDir() + SetFileName(name) */ DicomDir::DicomDir(std::string const &fileName, bool parseDir ): Document( ) @@ -141,18 +148,20 @@ DicomDir::DicomDir(std::string const &fileName, bool parseDir ): // (nothing is cheked in Document constructor, to avoid overhead) ParseDir = parseDir; - SetLoadMode (0x00000000); // concerns only dicom files - Load( fileName ); + SetLoadMode (LD_ALL); // concerns only dicom files + SetFileName( fileName ); + Load( ); } +#endif /** * \brief Canonical destructor */ DicomDir::~DicomDir() { - SetStartMethod(NULL); - SetProgressMethod(NULL); - SetEndMethod(NULL); + SetStartMethod(NULL,NULL,NULL); + SetProgressMethod(NULL,NULL,NULL); + SetEndMethod(NULL,NULL,NULL); ClearPatient(); if ( MetaElems ) @@ -164,11 +173,62 @@ DicomDir::~DicomDir() //----------------------------------------------------------------------------- // Public +/** + * \brief Loader. use SetFileName(fn) + * or SetLoadMode(lm) + SetDirectoryName(dn) before ! + * @return false if file cannot be open or no swap info was found, + * or no tag was found. + */ +bool DicomDir::Load( ) +{ + // We should clean out anything that already exists. + Initialize(); // sets all private fields to NULL + + if (!ParseDir) + { + if ( ! this->Document::Load( ) ) + return false; + } + return DoTheLoadingJob( ); +} + +#ifndef GDCM_LEGACY_REMOVE +/** + * \brief Loader. (DEPRECATED : kept not to break the API) + * @param fileName file to be open for parsing + * @return false if file cannot be open or no swap info was found, + * or no tag was found. + * @deprecated use SetFileName(n) + Load() instead + */ bool DicomDir::Load(std::string const &fileName ) { - Filename = fileName; // We should clean out anything that already exists. + Initialize(); // sets all private fields to NULL + + SetFileName( fileName ); + if (!ParseDir) + { + if ( ! this->Document::Load( ) ) + return false; + } + return DoTheLoadingJob( ); +} +/// DEPRECATED : use SetDirectoryName(dname) instead +void DicomDir::SetParseDir(bool parseDir) +{ + ParseDir = parseDir; +} +#endif + +/** + * \brief Does the Loading Job (internal use only) + * @return false if file cannot be open or no swap info was found, + * or no tag was found. + */ +bool DicomDir::DoTheLoadingJob( ) +{ + // We should clean out anything that already exists. Initialize(); // sets all private fields to NULL if (!ParseDir) @@ -180,10 +240,14 @@ bool DicomDir::Load(std::string const &fileName ) { return false; } - Document::Load(fileName); + if (!Document::Load() ) + { + return false; + } + if ( GetFirstEntry() == 0 ) // when user passed a Directory to parse { - gdcmWarningMacro( "Entry HT empty for file: "<< fileName); + gdcmWarningMacro( "Entry HT empty for file: "<< GetFileName()); return false; } // Directory record sequence @@ -191,7 +255,7 @@ bool DicomDir::Load(std::string const &fileName ) if ( !e ) { gdcmWarningMacro( "NO 'Directory record sequence' (0x0004,0x1220)" - << " in file " << fileName); + << " in file " << GetFileName()); return false; } else @@ -201,7 +265,7 @@ bool DicomDir::Load(std::string const &fileName ) { // Only if user passed a root directory // ------------------------------------ - if ( fileName == "." ) + if ( GetFileName() == "." ) { // user passed '.' as Name // we get current directory name @@ -210,8 +274,8 @@ bool DicomDir::Load(std::string const &fileName ) SetFileName( dummy ); // will be converted into a string } NewMeta(); - gdcmWarningMacro( "Parse directory and create the DicomDir : " << Filename ); - + gdcmWarningMacro( "Parse directory and create the DicomDir : " + << GetFileName() ); ParseDirectory(); } return true; @@ -227,17 +291,17 @@ bool DicomDir::Load(std::string const &fileName ) */ bool DicomDir::IsReadable() { - if( Filetype == Unknown) + if ( Filetype == Unknown ) { gdcmWarningMacro( "Wrong filetype"); return false; } - if( !MetaElems ) + if ( !MetaElems ) { gdcmWarningMacro( "Meta Elements missing in DicomDir"); return false; } - if( Patients.size() <= 0 ) + if ( Patients.size() <= 0 ) { gdcmWarningMacro( "NO Patient in DicomDir"); return false; @@ -251,18 +315,18 @@ bool DicomDir::IsReadable() */ DicomDirMeta *DicomDir::NewMeta() { - if( MetaElems ) + if ( MetaElems ) delete MetaElems; DocEntry *entry = GetFirstEntry(); - if( entry ) + if ( entry ) { MetaElems = new DicomDirMeta(true); // true = empty entry = GetFirstEntry(); while( entry ) { - if( dynamic_cast(entry) ) + if ( dynamic_cast(entry) ) break; RemoveEntryNoDestroy(entry); @@ -340,6 +404,21 @@ void DicomDir::ParseDirectory() CreateDicomDir(); } +void DicomDir::SetStartMethod( DicomDir::Method *method, void *arg ) +{ + SetStartMethod(method,arg,NULL); +} + +void DicomDir::SetProgressMethod( DicomDir::Method *method, void *arg ) +{ + SetProgressMethod(method,arg,NULL); +} + +void DicomDir::SetEndMethod( DicomDir::Method *method, void *arg ) +{ + SetEndMethod(method,arg,NULL); +} + /** * \brief Set the start method to call when the parsing of the * directory starts. @@ -351,7 +430,7 @@ void DicomDir::ParseDirectory() void DicomDir::SetStartMethod( DicomDir::Method *method, void *arg, DicomDir::Method *argDelete ) { - if( StartArg && StartMethodArgDelete ) + if ( StartArg && StartMethodArgDelete ) { StartMethodArgDelete( StartArg ); } @@ -373,7 +452,7 @@ void DicomDir::SetStartMethod( DicomDir::Method *method, void *arg, void DicomDir::SetProgressMethod( DicomDir::Method *method, void *arg, DicomDir::Method *argDelete ) { - if( ProgressArg && ProgressMethodArgDelete ) + if ( ProgressArg && ProgressMethodArgDelete ) { ProgressMethodArgDelete( ProgressArg ); } @@ -393,7 +472,7 @@ void DicomDir::SetProgressMethod( DicomDir::Method *method, void *arg, void DicomDir::SetEndMethod( DicomDir::Method *method, void *arg, DicomDir::Method *argDelete ) { - if( EndArg && EndMethodArgDelete ) + if ( EndArg && EndMethodArgDelete ) { EndMethodArgDelete( EndArg ); } @@ -452,7 +531,7 @@ bool DicomDir::WriteDicomDir(std::string const &fileName) std::ofstream *fp = new std::ofstream(fileName.c_str(), std::ios::out | std::ios::binary); - if( !fp ) + if ( !fp ) { gdcmWarningMacro("Failed to open(write) File: " << fileName.c_str()); return false; @@ -552,22 +631,24 @@ void DicomDir::CreateDicomDirChainedList(std::string const &path) { Progress = (float)(count+1)/(float)fileList.size(); CallProgressMethod(); - if( Abort ) + if ( Abort ) { break; } - f = new File( ); - f->SetLoadMode(LoadMode); // we allow user not to load Sequences... - f->Load( it->c_str() ); + f = new File( ); + f->SetLoadMode(LoadMode); // we allow user not to load Sequences, or Shadow + // groups, or ...... + f->SetFileName( it->c_str() ); + /*int res = */f->Load( ); -// if( !f ) +// if ( !f ) // { // gdcmWarningMacro( "Failure in new gdcm::File " << it->c_str() ); // continue; // } - if( f->IsReadable() ) + if ( f->IsReadable() ) { // Add the file to the chained list: list.push_back(f); @@ -602,7 +683,7 @@ void DicomDir::CallStartMethod() { Progress = 0.0f; Abort = false; - if( StartMethod ) + if ( StartMethod ) { StartMethod( StartArg ); } @@ -613,7 +694,7 @@ void DicomDir::CallStartMethod() */ void DicomDir::CallProgressMethod() { - if( ProgressMethod ) + if ( ProgressMethod ) { ProgressMethod( ProgressArg ); } @@ -625,7 +706,7 @@ void DicomDir::CallProgressMethod() void DicomDir::CallEndMethod() { Progress = 1.0f; - if( EndMethod ) + if ( EndMethod ) { EndMethod( EndArg ); } @@ -702,54 +783,76 @@ void DicomDir::CreateDicomDir() continue; } - if( v == "PATIENT " ) + // A decent DICOMDIR has much more images than series, + // more series than studies, and so on. + // This is the right order to preform the tests + + if ( v == "IMAGE " ) { - si = new DicomDirPatient(true); - if( !AddPatientToEnd( static_cast(si)) ) + si = new DicomDirImage(true); + if ( !AddImageToEnd( static_cast(si)) ) { delete si; si = NULL; - gdcmErrorMacro( "Add PatientToEnd failed"); + gdcmErrorMacro( "Add AddImageToEnd failed"); } } - else if( v == "STUDY " ) + else if ( v == "SERIES" ) { - si = new DicomDirStudy(true); - if( !AddStudyToEnd( static_cast(si)) ) + si = new DicomDirSerie(true); + if ( !AddSerieToEnd( static_cast(si)) ) { delete si; si = NULL; - gdcmErrorMacro( "Add AddStudyToEnd failed"); + gdcmErrorMacro( "Add AddSerieToEnd failed"); } } - else if( v == "SERIES" ) + else if ( v == "VISIT " ) { - si = new DicomDirSerie(true); - if( !AddSerieToEnd( static_cast(si)) ) + si = new DicomDirVisit(true); + if ( !AddVisitToEnd( static_cast(si)) ) { delete si; si = NULL; - gdcmErrorMacro( "Add AddSerieToEnd failed"); + gdcmErrorMacro( "Add AddVisitToEnd failed"); } } - else if( v == "IMAGE " ) + else if ( v == "STUDY " ) { - si = new DicomDirImage(true); - if( !AddImageToEnd( static_cast(si)) ) + si = new DicomDirStudy(true); + if ( !AddStudyToEnd( static_cast(si)) ) { delete si; si = NULL; - gdcmErrorMacro( "Add AddImageToEnd failed"); + gdcmErrorMacro( "Add AddStudyToEnd failed"); + } + } + else if ( v == "PATIENT " ) + { + si = new DicomDirPatient(true); + if ( !AddPatientToEnd( static_cast(si)) ) + { + delete si; + si = NULL; + gdcmErrorMacro( "Add PatientToEnd failed"); } } else { - // It was not a 'PATIENT', nor a 'STUDY', nor a 'SERIE', - // neither an 'IMAGE' SQItem. Skip to next item. - continue; + // It was neither a 'PATIENT', nor a 'STUDY', nor a 'SERIE', + // nor an 'IMAGE' SQItem. Skip to next item. + gdcmWarningMacro( " -------------------------------------------" + << "a non PATIENT/STUDY/SERIE/IMAGE SQItem was found : " + << v); + + // FIXME : deal with other item types ! + tmpSI=s->GetNextSQItem(); // To avoid infinite loop + continue; } - if( si ) - MoveSQItem(si,tmpSI); + if ( si ) + //MoveSQItem(si,tmpSI); // Old code : Copies each Entry + // -and then removes the source- + si->MoveObject(tmpSI); // New code : Copies the List tmpSI=s->GetNextSQItem(); } @@ -772,7 +875,7 @@ bool DicomDir::AddPatientToEnd(DicomDirPatient *dd) */ bool DicomDir::AddStudyToEnd(DicomDirStudy *dd) { - if( Patients.size() > 0 ) + if ( Patients.size() > 0 ) { ListDicomDirPatient::iterator itp = Patients.end(); itp--; @@ -788,13 +891,13 @@ bool DicomDir::AddStudyToEnd(DicomDirStudy *dd) */ bool DicomDir::AddSerieToEnd(DicomDirSerie *dd) { - if( Patients.size() > 0 ) + if ( Patients.size() > 0 ) { ListDicomDirPatient::iterator itp = Patients.end(); itp--; DicomDirStudy *study = (*itp)->GetLastStudy(); - if( study ) + if ( study ) { study->AddSerie(dd); return true; @@ -803,22 +906,42 @@ bool DicomDir::AddSerieToEnd(DicomDirSerie *dd) return false; } +/** + * \brief AddVisitToEnd + * @param dd SQ Item to enqueue to the DicomDirVisit chained List + */ +bool DicomDir::AddVisitToEnd(DicomDirVisit *dd) +{ + if ( Patients.size() > 0 ) + { + ListDicomDirPatient::iterator itp = Patients.end(); + itp--; + + DicomDirStudy *study = (*itp)->GetLastStudy(); + if ( study ) + { + study->AddVisit(dd); + return true; + } + } + return false; +} /** * \brief AddImageToEnd * @param dd SQ Item to enqueue to the DicomDirImage chained List */ bool DicomDir::AddImageToEnd(DicomDirImage *dd) { - if( Patients.size() > 0 ) + if ( Patients.size() > 0 ) { ListDicomDirPatient::iterator itp = Patients.end(); itp--; DicomDirStudy *study = (*itp)->GetLastStudy(); - if( study ) + if ( study ) { DicomDirSerie *serie = study->GetLastSerie(); - if( serie ) + if ( serie ) { serie->AddImage(dd); return true; @@ -860,22 +983,22 @@ void DicomDir::SetElements(std::string const &path, VectDocument const &list) serCurInstanceUID = (*it)->GetEntryValue(0x0020,0x000e); serCurID = (*it)->GetEntryValue(0x0020,0x0011); - if( patCurName != patPrevName || patCurID != patPrevID || first ) + if ( patCurName != patPrevName || patCurID != patPrevID || first ) { SetElement(path, GDCM_DICOMDIR_PATIENT, *it); first = true; } - // if new Study Deal with 'STUDY' Elements - if( studCurInstanceUID != studPrevInstanceUID || studCurID != studPrevID + // if new Study, deal with 'STUDY' Elements + if ( studCurInstanceUID != studPrevInstanceUID || studCurID != studPrevID || first ) { SetElement(path, GDCM_DICOMDIR_STUDY, *it); first = true; } - // if new Serie Deal with 'SERIE' Elements - if( serCurInstanceUID != serPrevInstanceUID || serCurID != serPrevID + // if new Serie, deal with 'SERIE' Elements + if ( serCurInstanceUID != serPrevInstanceUID || serCurID != serPrevID || first ) { SetElement(path, GDCM_DICOMDIR_SERIE, *it); @@ -918,7 +1041,7 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, case GDCM_DICOMDIR_IMAGE: elemList = Global::GetDicomDirElements()->GetDicomDirImageElements(); si = new DicomDirImage(true); - if( !AddImageToEnd(static_cast(si)) ) + if ( !AddImageToEnd(static_cast(si)) ) { delete si; gdcmErrorMacro( "Add ImageToEnd failed"); @@ -927,7 +1050,7 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, case GDCM_DICOMDIR_SERIE: elemList = Global::GetDicomDirElements()->GetDicomDirSerieElements(); si = new DicomDirSerie(true); - if( !AddSerieToEnd(static_cast(si)) ) + if ( !AddSerieToEnd(static_cast(si)) ) { delete si; gdcmErrorMacro( "Add SerieToEnd failed"); @@ -936,7 +1059,7 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, case GDCM_DICOMDIR_STUDY: elemList = Global::GetDicomDirElements()->GetDicomDirStudyElements(); si = new DicomDirStudy(true); - if( !AddStudyToEnd(static_cast(si)) ) + if ( !AddStudyToEnd(static_cast(si)) ) { delete si; gdcmErrorMacro( "Add StudyToEnd failed"); @@ -945,7 +1068,7 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, case GDCM_DICOMDIR_PATIENT: elemList = Global::GetDicomDirElements()->GetDicomDirPatientElements(); si = new DicomDirPatient(true); - if( !AddPatientToEnd(static_cast(si)) ) + if ( !AddPatientToEnd(static_cast(si)) ) { delete si; gdcmErrorMacro( "Add PatientToEnd failed"); @@ -954,7 +1077,7 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, case GDCM_DICOMDIR_META: elemList = Global::GetDicomDirElements()->GetDicomDirMetaElements(); si = new DicomDirMeta(true); - if( MetaElems ) + if ( MetaElems ) { delete MetaElems; gdcmErrorMacro( "MetaElements already exist, they will be destroyed"); @@ -985,7 +1108,7 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, entry->SetOffset(0); // just to avoid further missprinting - if( header ) + if ( header ) { // NULL when we Build Up (ex nihilo) a DICOMDIR // or when we add the META elems @@ -996,16 +1119,16 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, val = GDCM_UNFOUND; } - if( val == GDCM_UNFOUND) + if ( val == GDCM_UNFOUND) { - if( tmpGr == 0x0004 && tmpEl == 0x1130 ) // File-set ID + if ( tmpGr == 0x0004 && tmpEl == 0x1130 ) // File-set ID { // force to the *end* File Name val = Util::GetName( path ); } - else if( tmpGr == 0x0004 && tmpEl == 0x1500 ) // Only used for image + else if ( tmpGr == 0x0004 && tmpEl == 0x1500 ) // Only used for image { - if( header->GetFileName().substr(0, path.length()) != path ) + if ( header->GetFileName().substr(0, path.length()) != path ) { gdcmWarningMacro( "The base path of file name is incorrect"); val = header->GetFileName(); @@ -1043,7 +1166,7 @@ void DicomDir::SetElement(std::string const &path, DicomDirType type, * @param src source SQItem */ void DicomDir::MoveSQItem(DocEntrySet *dst,DocEntrySet *src) -{ +{ DocEntry *entry; entry = src->GetFirstEntry(); @@ -1073,7 +1196,7 @@ bool DicomDir::HeaderLessThan(Document *header1, Document *header2) */ void DicomDir::Print(std::ostream &os, std::string const & ) { - if( MetaElems ) + if ( MetaElems ) { MetaElems->SetPrintLevel(PrintLevel); MetaElems->Print(os);