X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=src%2FgdcmFile.cxx;h=f79b64e7c8618eb8cc8f574c93ef064f13daf54e;hb=aedf83c26c99c5e632f159b91138b0e178b9fb4b;hp=214d8035162bb3cdb4828970230063a55e1cf02e;hpb=fbd2698cb0545343abc2d8aefe92bab1f5b3eaa3;p=gdcm.git diff --git a/src/gdcmFile.cxx b/src/gdcmFile.cxx index 214d8035..f79b64e7 100644 --- a/src/gdcmFile.cxx +++ b/src/gdcmFile.cxx @@ -3,8 +3,8 @@ Program: gdcm Module: $RCSfile: gdcmFile.cxx,v $ Language: C++ - Date: $Date: 2005/07/07 16:37:40 $ - Version: $Revision: 1.249 $ + Date: $Date: 2005/07/30 18:17:08 $ + Version: $Revision: 1.264 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or @@ -26,6 +26,42 @@ // as the Z coordinate, // 0. for all the coordinates if nothing is found // +// Image Position (Patient) (0020,0032) VM=3 What is it used for? +// --> +// The attribute Patient Orientation (0020,0020) from the General Image Module +// is of type 2C and has the condition Required if image does not require +// Image Orientation (0020,0037) and Image Position (0020,0032). +// However, if the image does require the attributes +// - Image Orientation (Patient) (0020,0037), VM=6 +// - Image Position Patient (0020,0032), VM=3 +// then attribute Patient Orientation (0020,0020) should not be present +// in the images. +// +// Remember also : +// Patient Position (0018,5100) values : HFP = Head First-Prone +// HFS = Head First-Supine +// HFDR = Head First-Decubitus Right +// HFDL = Head First-Decubitus Left +// FFDR = Feet First-Decubitus Right +// FFDL = Feet First-Decubitus Left +// FFP = Feet First-Prone +// FFS = Feet First-Supine +// can also find SEMIERECT +// SUPINE +// CS 2 Patient Orientation (0020 0020) +// When the coordinates of the image +// are always present, this field is almost never used. +// Better we don't tust it too much ... +// Found Values are : L\P +// L\FP +// P\F +// L\F +// P\FR +// R\F +// +// (0020|0037) [Image Orientation (Patient)] [1\0\0\0\1\0 ] + + // --------------------------------------------------------------- // #include "gdcmFile.h" @@ -45,6 +81,7 @@ namespace gdcm { + //----------------------------------------------------------------------------- // Constructor / Destructor @@ -60,18 +97,6 @@ File::File(): NumPixel = 0x0010; } -/** - * \brief Constructor - * @param filename name of the file whose header we want to analyze - */ -File::File( std::string const &filename ) - :Document( ) -{ - RLEInfo = new RLEFramesInfo; - JPEGInfo = new JPEGFragmentsInfo; - - Load( filename ); // gdcm::Document is first Loaded, then the 'File part' -} /** * \brief Canonical destructor. @@ -98,20 +123,6 @@ bool File::Load( ) return DoTheLoadingJob( ); } -/** - * \brief Loader. (DEPRECATED : not to break the API) - * @param fileName file to be open for parsing - * @return false if file cannot be open or no swap info was found, - * or no tag was found. - */ -bool File::Load( std::string const &fileName ) -{ - SetFileName( fileName ); - if ( ! this->Document::Load( ) ) - return false; - - return DoTheLoadingJob( ); -} /** * \brief Does the Loading Job (internal use only) @@ -724,7 +735,7 @@ float File::GetZOrigin() * @param iop adress of the (6)float array to receive values * @return cosines of image orientation patient */ -void File::GetImageOrientationPatient( float iop[6] ) +bool File::GetImageOrientationPatient( float iop[6] ) { std::string strImOriPat; //iop is supposed to be float[6] @@ -737,6 +748,7 @@ void File::GetImageOrientationPatient( float iop[6] ) &iop[0], &iop[1], &iop[2], &iop[3], &iop[4], &iop[5]) != 6 ) { gdcmWarningMacro( "Wrong Image Orientation Patient (0020,0037). Less than 6 values were found." ); + return false; } } //For ACR-NEMA @@ -747,8 +759,10 @@ void File::GetImageOrientationPatient( float iop[6] ) &iop[0], &iop[1], &iop[2], &iop[3], &iop[4], &iop[5]) != 6 ) { gdcmWarningMacro( "wrong Image Orientation Patient (0020,0035). Less than 6 values were found." ); + return false; } } + return true; } /** @@ -771,8 +785,8 @@ int File::GetBitsStored() /** * \brief Retrieve the number of Bits Allocated - * (8, 12 -compacted ACR-NEMA files-, 16, ...) - * @return The encountered number of Bits Allocated, 0 by default. + * (8, 12 -compacted ACR-NEMA files-, 16, 24 -old RGB ACR-NEMA files-,) + * @return The encountered Number of Bits Allocated, 0 by default. * 0 means the file is NOT USABLE. The caller has to check it ! */ int File::GetBitsAllocated() @@ -906,8 +920,8 @@ std::string File::GetPixelType() } else if ( bitsAlloc == "24" ) { - // (in order no to be messed up - bitsAlloc = "8"; // by old RGB images) + // (in order no to be messed up by old RGB images) + bitsAlloc = "8"; } std::string sign = GetEntryValue(0x0028, 0x0103);//"Pixel Representation" @@ -1300,9 +1314,11 @@ void File::AnonymizeNoLoad() if ( d == NULL) continue; - if ( dynamic_cast(d) - || dynamic_cast(d) ) - continue; + if ( dynamic_cast(d) ) + { + gdcmWarningMacro( "You cannot 'Anonymize a SeqEntry "); + continue; + } offset = d->GetOffset(); lgth = d->GetLength(); @@ -1323,6 +1339,7 @@ void File::AnonymizeNoLoad() /** * \brief anonymize a File (remove Patient's personal info passed with * AddAnonymizeElement() + * \note You cannot Anonymize a BinEntry (to be fixed) */ bool File::AnonymizeFile() { @@ -1361,11 +1378,19 @@ bool File::AnonymizeFile() if ( d == NULL) continue; - if ( dynamic_cast(d) - || dynamic_cast(d) ) + if ( dynamic_cast(d) ) + { + gdcmWarningMacro( "You cannot 'Anonymize' a SeqEntry "); continue; + } - SetValEntry ((*it).Value, (*it).Group, (*it).Elem); + if ( dynamic_cast(d) ) + { + gdcmWarningMacro( "To 'Anonymize' a BinEntry, better use AnonymizeNoLoad (FIXME) "); + continue; + } + else + SetValEntry ((*it).Value, (*it).Group, (*it).Elem); } } @@ -1725,6 +1750,43 @@ void File::ReadAndSkipEncapsulatedBasicOffsetTable() } } +// These are the deprecated method that one day should be removed (after the next release) + +#ifndef GDCM_LEGACY_REMOVE +/** + * \brief Constructor (DEPRECATED : temporaryly kept not to break the API) + * @param filename name of the file whose header we want to analyze + * @deprecated do not use any longer + */ +File::File( std::string const &filename ) + :Document( ) +{ + RLEInfo = new RLEFramesInfo; + JPEGInfo = new JPEGFragmentsInfo; + + SetFileName( filename ); + Load( ); // gdcm::Document is first Loaded, then the 'File part' +} + +/** + * \brief Loader. (DEPRECATED : temporaryly kept not to break the API) + * @param fileName file to be open for parsing + * @return false if file cannot be open or no swap info was found, + * or no tag was found. + * @deprecated Use the Load() [ + SetLoadMode() ] + SetFileName() functions instead + */ +bool File::Load( std::string const &fileName ) +{ + GDCM_LEGACY_REPLACED_BODY(File::Load(std::string), "1.2", + File::Load()); + SetFileName( fileName ); + if ( ! this->Document::Load( ) ) + return false; + + return DoTheLoadingJob( ); +} +#endif + //----------------------------------------------------------------------------- // Print