X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=src%2FgdcmFile.h;h=4090131fcb31206524ee3fe9ae0ae4a17912d07c;hb=e62d57cbd05c8e864fd2ba197a271cdcac9a2128;hp=6773662c46f08f9d47ec7a75682d508d63239b9d;hpb=06c1c583239fdf5196260e6ef83a78669c1bd17f;p=gdcm.git diff --git a/src/gdcmFile.h b/src/gdcmFile.h index 6773662c..4090131f 100644 --- a/src/gdcmFile.h +++ b/src/gdcmFile.h @@ -1,5 +1,21 @@ -// gdcmFile.h -//----------------------------------------------------------------------------- +/*========================================================================= + + Program: gdcm + Module: $RCSfile: gdcmFile.h,v $ + Language: C++ + Date: $Date: 2004/09/24 11:39:21 $ + Version: $Revision: 1.51 $ + + Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de + l'Image). All rights reserved. See Doc/License.txt or + http://www.creatis.insa-lyon.fr/Public/Gdcm/License.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notices for more information. + +=========================================================================*/ + #ifndef GDCMFILE_H #define GDCMFILE_H @@ -10,95 +26,189 @@ /* * In addition to Dicom header exploration, this class is designed * for accessing the image/volume content. One can also use it to - * write Dicom files. + * write Dicom/ACR-NEMA/RAW files. */ class GDCM_EXPORT gdcmFile { public: - gdcmFile(gdcmHeader *header); - gdcmFile(std::string & filename); - gdcmFile(const char * filename); - virtual ~gdcmFile(void); - - gdcmHeader *GetHeader(void); - - // For promotion (performs a deepcopy of pointed header object) - // TODO Swig gdcmFile(gdcmHeader* header); - // TODO Swig ~gdcmFile(); - - // On writing purposes. When instance was created through - // gdcmFile(std::string filename) then the filename argument MUST be - // different from the constructor's one (no overwriting allowed). - // TODO Swig int SetFileName(std::string filename); - - void SetPixelDataSizeFromHeader(void); - size_t GetImageDataSize(); - size_t GetImageDataSizeRaw(); - - void * GetImageData(); - size_t GetImageDataIntoVector(void* destination, size_t MaxSize); - void * GetImageDataRaw(); - size_t GetImageDataIntoVectorRaw(void* destination, size_t MaxSize); - - // Allocates ExpectedSize bytes of memory at this->Data and copies the - // pointed data to it. Copying the image might look useless but - // the caller might destroy it's image (without knowing it: think - // of a complicated interface where display is done with a library - // e.g. VTK) before calling the Write + gdcmFile( gdcmHeader *header ); + gdcmFile( std::string const& filename ); + + virtual ~gdcmFile(); + + /// Accessor to \ref Header + gdcmHeader* GetHeader() { return Header; } + + void SetPixelDataSizeFromHeader(); + + +/// \brief Returns the size (in bytes) of required memory to hold +/// the pixel data represented in this file. + size_t GetImageDataSize(){ return ImageDataSize; }; + + +/// \brief Returns the size (in bytes) of required memory to hold +/// the pixel data represented in this file, if user DOESN'T want +/// to get RGB pixels image when it's stored as a PALETTE COLOR image +/// -the (vtk) user is supposed to know how to deal with LUTs- + size_t GetImageDataSizeRaw(){ return ImageDataSizeRaw; }; + + uint8_t* GetImageData(); + size_t GetImageDataIntoVector(void* destination, size_t maxSize); + uint8_t* GetImageDataRaw(); + size_t GetImageDataIntoVectorRaw(void* destination, size_t maxSize); + + // Allocates ExpectedSize bytes of memory at this->Data and copies the + // pointed data to it. Copying the image might look useless but + // the caller might destroy it's image (without knowing it: think + // of a complicated interface where display is done with a library + // e.g. VTK) before calling the Write - // voir gdcmHeader::SetImageDataSize ?!? - bool SetImageData (void * Data, size_t ExpectedSize); - // When the caller is aware we simply point to the data: - // TODO int SetImageDataNoCopy (void * Data, size_t ExpectedSize); - - // Push to disk. - // A NE PAS OUBLIER : que fait-on en cas de Transfert Syntax (dans l'entete) - // incohérente avec l'ordre des octets en mémoire ? - // TODO Swig int Write(); - + // see also gdcmHeader::SetImageDataSize ?!? + bool SetImageData (uint8_t* data, size_t expectedSize); + + /// \todo When the caller is aware we simply point to the data: + /// int SetImageDataNoCopy (void* Data, size_t ExpectedSize); + // Write pixels of ONE image on hard drive - // No test is made on processor "stupidity" + // No test is made on processor "endianity" // The user must call his reader correctly - bool WriteRawData (std::string fileName); - bool WriteDcmImplVR(std::string fileName); - bool WriteDcmImplVR(const char * fileName); - bool WriteDcmExplVR(std::string fileName); - bool WriteAcr (std::string fileName); - -protected: - bool WriteBase(std::string FileName, FileType type); + bool WriteRawData (std::string const& fileName); + bool WriteDcmImplVR(std::string const& fileName); + bool WriteDcmExplVR(std::string const& fileName); + bool WriteAcr (std::string const& fileName); - // Body in file gdcmParse.cxx - bool ParsePixelData(void); + // Don't look any longer for the code : + // It's in file gdcmParsePixels.cxx + bool ParsePixelData(); + + virtual bool SetEntryByNumber(std::string const& content, + uint16_t group, uint16_t element) + { + Header->SetEntryByNumber(content,group,element); + return true; + } + +protected: + bool WriteBase(std::string const& fileName, FileType type); private: void SwapZone(void* im, int swap, int lgr, int nb); - - bool ReadPixelData(void * destination); + + bool ReadPixelData(void* destination); // For JPEG 8 Bits, body in file gdcmJpeg.cxx - bool gdcm_read_JPEG_file (FILE *fp,void * image_buffer); - static int gdcm_read_RLE_fragment(char **areaToRead, long lengthToDecode, - long uncompressedSegmentSize,FILE *fp); + bool gdcm_read_JPEG_file (FILE* fp, void* image_buffer); + bool gdcm_write_JPEG_file (FILE* fp, void* image_buffer, + int image_width, int image_heigh, + int quality); + // For JPEG 12 Bits, body in file gdcmJpeg12.cxx - bool gdcm_read_JPEG_file12 (FILE *fp,void * image_buffer); + bool gdcm_read_JPEG_file12 (FILE* fp, void* image_buffer); + bool gdcm_write_JPEG_file12 (FILE* fp, void* image_buffer, + int image_width, int image_height, + int quality); + // For JPEG 2000, body in file gdcmJpeg2000.cxx - bool gdcm_read_JPEG2000_file (FILE *fp,void * image_buffer); + bool gdcm_read_JPEG2000_file (FILE* fp, void* image_buffer); + + // For Run Length Encoding + bool gdcm_read_RLE_file (FILE* fp, void* image_buffer); +// FIXME : *sure* it's NOT static (C++) +// (would be static in C, or embedded in ADA) +// It's NOT a method, but a not user intended fonction. +// How do we write that in C++ ?) + static int gdcm_read_RLE_fragment(char **areaToRead, long lengthToDecode, + long uncompressedSegmentSize, FILE* fp); + + void SaveInitialValues(); // will belong to the future gdcmPixelData class + void RestoreInitialValues(); // will belong to the future gdcmPixelData class + void DeleteInitialValues(); // will belong to the future gdcmPixelData class - // For Run Length Encoding (TOCHECK) - bool gdcm_read_RLE_file (FILE *fp,void * image_buffer); +// members variables: -// Variables - gdcmHeader *Header; // Header to use to load the file + /// \brief Header to use to load the file + gdcmHeader *Header; + + /// \brief Whether the underlying \ref gdcmHeader was loaded by + /// the constructor or passed to the constructor. When false + /// the destructor is in charge of deletion. bool SelfHeader; + + /// wether already parsed + bool Parsed; + + // + // --------------- Will be moved to a gdcmPixelData class + // + + /// \brief to hold the Pixels (when read) + uint8_t* Pixel_Data; // (was PixelData) + + /// \brief Area length to receive the Gray Level pixels + size_t ImageDataSizeRaw; + + /// \brief Area length to receive the pixels making RGB + /// from Plane R, Plane G, Plane B + /// or from Grey Plane + Palette Color + /// or from YBR Pixels (or from RGB Pixels, as well) + size_t ImageDataSize; + + /// \brief ==1 if GetImageDataRaw was used + /// ==0 if GetImageData was used + /// ==-1 if ImageData never read + int PixelRead; + + /// \brief length of the last allocated area devoided to receive Pixels + /// ( to allow us not to (free + new) if un necessary ) + size_t LastAllocatedPixelDataLength; - void* PixelData; - size_t lgrTotaleRaw; // Area length to receive the pixels - size_t lgrTotale; // Area length to receive the RGB pixels - // from Grey Plane + Palette Color + // Initial values of some fields that can be modified during reading process + // (in a future stage, they will be modified just before the writting process + // and restored just after) + // if user asked to transform gray level + LUT image into RGB image + + /// \brief Samples Per Pixel (0x0028,0x0002), as found on disk + std::string InitialSpp; + /// \brief Photometric Interpretation (0x0028,0x0004), as found on disk + std::string InitialPhotInt; + /// \brief Planar Configuration (0x0028,0x0006), as found on disk + std::string InitialPlanConfig; + + // Initial values of some fields that can be modified during reading process + // (in a future stage, they will be modified just before the writting process + // and restored just after) + // if the image was a 'strange' ACR-NEMA + // (Bits Allocated=12, High Bit not equal to Bits stored +1) + /// \brief Bits Allocated (0x0028,0x0100), as found on disk + std::string InitialBitsAllocated; + /// \brief High Bit (0x0028,0x0102), as found on disk + std::string InitialHighBit; + + // some DocEntry that can be moved out of the H table during reading process + // (in a future stage, they will be modified just before the writting process + // and restored just after) + // if user asked to transform gray level + LUT image into RGB image + // We keep a pointer on them for a future use. + + /// \brief Red Palette Color Lookup Table Descriptor 0028 1101 as read + gdcmDocEntry* InitialRedLUTDescr; + /// \brief Green Palette Color Lookup Table Descriptor 0028 1102 as read + gdcmDocEntry* InitialGreenLUTDescr; + /// \brief Blue Palette Color Lookup Table Descriptor 0028 1103 as read + gdcmDocEntry* InitialBlueLUTDescr; + + /// \brief Red Palette Color Lookup Table Data 0028 1201 as read + gdcmDocEntry* InitialRedLUTData; + /// \brief Green Palette Color Lookup Table Data 0028 1202 as read + gdcmDocEntry* InitialGreenLUTData; + /// \brief Blue Palette Color Lookup Table Data 0028 1203 as read + gdcmDocEntry* InitialBlueLUTData; + + // + // --------------- end of future gdcmPixelData class + // - int Parsed; // weather already parsed - std::string OrigFileName; // To avoid file overwrite }; //-----------------------------------------------------------------------------