X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=src%2FgdcmFileHelper.h;h=e0ae6b34ba37aec8b143de570d70f7db990c115e;hb=b9b3962fbd7277e71fee5bcf49cf798583e98e69;hp=1c1d0d8d07b4e60aa5b83d840e1668163ee77a2b;hpb=bc69950a406d06c50f0fb75a96572784965cb534;p=gdcm.git diff --git a/src/gdcmFileHelper.h b/src/gdcmFileHelper.h index 1c1d0d8d..e0ae6b34 100644 --- a/src/gdcmFileHelper.h +++ b/src/gdcmFileHelper.h @@ -3,8 +3,8 @@ Program: gdcm Module: $RCSfile: gdcmFileHelper.h,v $ Language: C++ - Date: $Date: 2005/10/18 08:35:50 $ - Version: $Revision: 1.23 $ + Date: $Date: 2007/05/23 14:18:10 $ + Version: $Revision: 1.47 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or @@ -20,14 +20,13 @@ #define GDCMFILEHELPER_H #include "gdcmDebug.h" -#include "gdcmBase.h" -//#include +#include "gdcmRefCounter.h" +#include "gdcmVRKey.h" +#include "gdcmFile.h" - - -namespace gdcm +namespace GDCM_NAME_SPACE { -class File; +//class File; class DataEntry; class SeqEntry; class PixelReadConvert; @@ -42,22 +41,22 @@ typedef void (*VOID_FUNCTION_PUINT8_PFILE_POINTER)(uint8_t *, File *); * for accessing the image/volume content. One can also use it to * write Dicom/ACR-NEMA/RAW files. */ -class GDCM_EXPORT FileHelper : public Base +class GDCM_EXPORT FileHelper : public RefCounter { + gdcmTypeMacro(FileHelper); + public: enum FileMode { WMODE_RAW, WMODE_RGB }; - -public: - FileHelper( ); - FileHelper( File *header ); - GDCM_LEGACY(FileHelper( std::string const &filename )); - - virtual ~FileHelper(); +/// \brief Constructs a FileHelper with a RefCounter + static FileHelper *New() {return new FileHelper();} +/// \brief Constructs a FileHelper with a RefCounter from a fileHelper + static FileHelper *New(File *header) {return new FileHelper(header);} + void Print(std::ostream &os = std::cout, std::string const &indent = ""); /// Accessor to \ref File @@ -67,7 +66,7 @@ public: void SetLoadMode(int loadMode); void SetFileName(std::string const &fileName); bool Load(); - /// to allow user to modify pixel order (e.g. Mirror, TopDown,...) + /// to allow user to modify pixel order (e.g. Mirror, UpsideDown,...) void SetUserFunction( VOID_FUNCTION_PUINT8_PFILE_POINTER userFunc ) { UserFunction = userFunc; } // File methods @@ -77,9 +76,9 @@ public: uint16_t group, uint16_t elem); DataEntry *InsertEntryString(std::string const &content, - uint16_t group, uint16_t elem); + uint16_t group, uint16_t elem, const VRKey &vr); DataEntry *InsertEntryBinArea(uint8_t *binArea, int lgth, - uint16_t group, uint16_t elem); + uint16_t group, uint16_t elem, const VRKey &vr); SeqEntry *InsertSeqEntry(uint16_t group, uint16_t elem); // File helpers @@ -89,7 +88,7 @@ public: uint8_t *GetImageData(); uint8_t *GetImageDataRaw(); - GDCM_LEGACY(size_t GetImageDataIntoVector(void *destination,size_t maxSize)); +// GDCM_LEGACY(size_t GetImageDataIntoVector(void *destination,size_t maxSize)) void SetImageData(uint8_t *data, size_t expectedSize); @@ -118,7 +117,11 @@ public: /// (as opposed to 'Grey pixels + Palettes color') void SetWriteModeToRGB() { SetWriteMode(WMODE_RGB); } /// \brief Sets the Write Mode ( ) - void SetWriteMode(FileMode mode) { WriteMode = mode; } + void SetWriteMode(FileMode mode) { + WriteMode = mode; + // Deal with Samples per Pixel + //if (mode == WMODE_RGB) FileInternal->InsertEntryString("3",0x0028,0x0002); + } /// \brief Gets the Write Mode ( ) FileMode GetWriteMode() { return WriteMode; } @@ -132,11 +135,15 @@ public: void SetWriteTypeToAcr() { SetWriteType(ACR); } /// \brief Tells the writer we want to write as LibIDO void SetWriteTypeToAcrLibido() { SetWriteType(ACR_LIBIDO); } + /// \brief Tells the writer we want to write as JPEG + void SetWriteTypeToJPEG() { SetWriteType(JPEG); } + /// \brief Tells the writer we want to write as JPEG2000 + void SetWriteTypeToJPEG2000() { SetWriteType(JPEG2000); } /// \brief Tells the writer which format we want to write /// (ImplicitVR, ExplicitVR, ACR, ACR_LIBIDO) void SetWriteType(FileType format) { WriteType = format; } /// \brief Gets the format we talled the write we wanted to write - /// (ImplicitVR, ExplicitVR, ACR, ACR_LIBIDO) + /// (ImplicitVR, ExplicitVR, ACR, ACR_LIBIDO) FileType GetWriteType() { return WriteType; } // Write pixels of ONE image on hard drive @@ -147,8 +154,29 @@ public: bool WriteDcmExplVR(std::string const &fileName); bool WriteAcr (std::string const &fileName); bool Write (std::string const &fileName); - + +/// \brief We have to deal with 4 *very* different cases : +/// -1) user created ex nihilo his own image and wants to write it as a Dicom image. +/// USER_OWN_IMAGE +/// -2) user modified the pixels of an existing image. +/// FILTERED_IMAGE +/// -3) user created a new image, using existing images (eg MIP, MPR, cartography image) +/// CREATED_IMAGE +/// -4) user modified/added some tags *without processing* the pixels (anonymization... +/// UNMODIFIED_PIXELS_IMAGE + + void SetContentType (ImageContentType c) { ContentType = c; } + // no GetContentType() method, on purpose! + + void CallStartMethod(); + void CallProgressMethod(); + void CallEndMethod(); + protected: + FileHelper( ); + FileHelper( File *header ); + ~FileHelper(); + bool CheckWriteIntegrity(); void SetWriteToRaw(); @@ -156,6 +184,8 @@ protected: void RestoreWrite(); void SetWriteFileTypeToACR(); + void SetWriteFileTypeToJPEG(); + void SetWriteFileTypeToJPEG2000(); void SetWriteFileTypeToExplicitVR(); void SetWriteFileTypeToImplicitVR(); void RestoreWriteFileType(); @@ -165,11 +195,14 @@ protected: void RestoreWriteOfLibido(); DataEntry *CopyDataEntry(uint16_t group, uint16_t elem, - const TagName &vr = GDCM_UNKNOWN); + const VRKey &vr = GDCM_VRUNKNOWN); void CheckMandatoryElements(); - void CheckMandatoryEntry(uint16_t group,uint16_t elem,std::string value); - void SetMandatoryEntry(uint16_t group,uint16_t elem,std::string value); - void CopyMandatoryEntry(uint16_t group,uint16_t elem,std::string value); + void CheckMandatoryEntry(uint16_t group, uint16_t elem, std::string value, + const VRKey &vr = GDCM_VRUNKNOWN); + void SetMandatoryEntry(uint16_t group, uint16_t elem, std::string value, + const VRKey &vr = GDCM_VRUNKNOWN); + void CopyMandatoryEntry(uint16_t group, uint16_t elem, std::string value, + const VRKey &vr = GDCM_VRUNKNOWN); void RestoreWriteMandatory(); private: @@ -178,14 +211,16 @@ private: uint8_t *GetRaw(); // members variables: +protected: + /// value of the ??? for any progress bar + float Progress; + mutable bool Abort; + +private: + /// gdcm::File to use to load the file File *FileInternal; - /// \brief Whether the underlying \ref gdcm::File was loaded by - /// the constructor or passed to the constructor. - /// When false the destructor is in charge of deletion. - bool SelfHeader; - /// Whether already parsed or not bool Parsed; @@ -202,15 +237,25 @@ private: // Write variables /// \brief (WMODE_RAW, WMODE_RGB) FileMode WriteMode; + /// \brief (ImplicitVR, ExplicitVR, ACR, ACR_LIBIDO) FileType WriteType; - /// Pointer to a user supplied function to allow modification of pixel order - /// (i.e. : Mirror, TopDown, 90°Rotation, ...) + + /// \brief Pointer to a user supplied function to allow modification + /// of pixel order (e.g. : Mirror, UpsideDown, 90°Rotation, ...) /// use as : void userSuppliedFunction(uint8_t *im, gdcm::File *f) /// NB : the "uint8_t *" type of first param is just for prototyping. /// User will Cast it according what he founds with f->GetPixelType() /// See vtkgdcmSerieViewer for an example VOID_FUNCTION_PUINT8_PFILE_POINTER UserFunction; + + /// \brief only user knows what he did before asking the image to be written + /// - he created ex nihilo his own image + /// - he just applied a mathematical process on the pixels + /// - he created a new image, using existing images (eg MIP, MPR,cartography) + /// - he anonymized and image (*no* modif on the pixels) + ImageContentType ContentType; + }; } // end namespace gdcm