X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=src2%2FcreaImageIOGimmickView.cpp;h=6df7fc0132413e211c5a4c9d9b326a009654dba2;hb=da2cb2feea7bdf425151ea3fd71abf9b8b72c366;hp=e209d82e6232d5d0407373449cf3478622751d57;hpb=84809cf9be33368b919f46650048516db850aac0;p=creaImageIO.git

diff --git a/src2/creaImageIOGimmickView.cpp b/src2/creaImageIOGimmickView.cpp
index e209d82..6df7fc0 100644
--- a/src2/creaImageIOGimmickView.cpp
+++ b/src2/creaImageIOGimmickView.cpp
@@ -1,9 +1,10 @@
 #include <creaImageIOGimmickView.h>
 #include <creaImageIOSystem.h>
 #include "boost/filesystem.hpp"
-
+#include <gdcmGlobal.h>
+#include <gdcmSerieHelper.h>
+#include <vtkGdcmReader.h>
 namespace fs = boost::filesystem;
-
 namespace creaImageIO
 {
 
@@ -283,7 +284,7 @@ namespace creaImageIO
   ///Reads Images (Non Threaded)
 void GimmickView::ReadImagesNotThreaded(std::vector<vtkImageData*>& s, std::vector<std::string> im, int dimension)
 {
-
+	mReader.Stop();
 /* remember!
 
 #define GIMMICK_NO_IMAGE_SELECTION 0
@@ -299,15 +300,11 @@ void GimmickView::ReadImagesNotThreaded(std::vector<vtkImageData*>& s, std::vect
 	// Create the output data
 	if (im.size()==1) 
 	{
-		// Only one image : give it
-		vtkImageData* out = vtkImageData::New();
-		GimmickDebugMessage(3, "State Check: Full Filename: "
-					<<im.front()
-					<<std::endl);
+		vtkImageData * out=vtkImageData::New();
 		out->ShallowCopy(mReader.GetImage(im.front()));
-		s.push_back( out );
+		s.push_back(out);
 	}
-    	else if (im.size()>1) // Test inutile ? JPR
+    else if (im.size()>1) // Test inutile ? JPR
 	{
 		vtkImageData* first = mReader.GetImage( im.front());
 		if (dimension == 2)
@@ -325,17 +322,13 @@ void GimmickView::ReadImagesNotThreaded(std::vector<vtkImageData*>& s, std::vect
 		{
 			// n*2D to 3D
 			vtkImageData* out = vtkImageData::New();
-			out->CopyStructure(first);	
+//			out->CopyStructure(first);	
 			out->SetScalarType(first->GetScalarType());
+			out->SetNumberOfScalarComponents(first->GetNumberOfScalarComponents());
 			int ext[6];
 			//first->GetExtent(ext);  // JPR
 			first->GetWholeExtent(ext);  // renvoie egalement 0,0 en Z // JPR
 
-std::cout <<"in GimmickView::ReadImagesNotThreaded GetWholeExtent ext =";
-for (int jjj=0;jjj<6;jjj++)
-	std:cout << "   [" << jjj << "]=" << ext[jjj];
-std::cout << endl;
-
 			if(ext[5] == 0)
 			{
 				ext[5] = im.size()-1;
@@ -348,35 +341,96 @@ std::cout << endl;
 
 			// LG : TODO : Z Spacing  ?
 
-			out->AllocateScalars();
-
-			//first->Print(std::cout);
-			//	    out->Print(std::cout);
-
 			int dim[3];
 			first->GetDimensions(dim);
+
+			out->SetDimensions(dim[0], dim[1], im.size() );
+			out->AllocateScalars();
+			out->Update();
+
 			unsigned long imsize = dim[0] * dim[1];
 			imsize = imsize * dim[2] ;  // deal with multiframes // JPR
+
+
 //EED 03-11-2009
-			imsize = imsize * first->GetScalarSize();
+			// differents formats char , short, etc...
+			// differents components 1..3  ex. jpg ->RGB 3
+			imsize = imsize * first->GetScalarSize() * first->GetNumberOfScalarComponents();
 
+
+			// Order the file name vector
+
+			double spc[3];
+			first->GetSpacing(spc);
+			spc[2]=OrderTheFileNameVector(im);	
+			out->SetSpacing(spc);
 			int slice = 0;
 			std::vector<std::string>::iterator it;
+
 			for (it=im.begin(); it!=im.end(); ++it) 
 			{
-		
-			vtkImageData* cur = mReader.GetImage( (*it));
-		//	void* src = cur->GetScalarPointer(0,0,0);
-		//	void* dst = out->GetScalarPointer(0,0,slice);
-			memcpy(out->GetScalarPointer(0,0,slice), cur->GetScalarPointer(0,0,0), imsize);
-
-			slice++;
+				vtkImageData* cur = mReader.GetImage( (*it) );
+				memcpy(out->GetScalarPointer(0,0,slice), cur->GetScalarPointer(0,0,0), imsize);
+				slice++;
 			}	
 			s.push_back(out);
+
+		}  // dimension == 3
+
+	}  // size >1
+
+}
+  //======================================================================
+
+
+double GimmickView::OrderTheFileNameVector(std::vector<std::string> &im)
+{
+	double spacing=1;
+	typedef std::vector<GDCM_NAME_SPACE::File* > FileList;
+	FileList fileVector;
+	//GDCM_NAME_SPACE::File *f = GDCM_NAME_SPACE::File::New();
+	GDCM_NAME_SPACE::SerieHelper *sh = GDCM_NAME_SPACE::SerieHelper::New();
+	std::vector<std::string> lstAux;
+	std::vector<std::string>::iterator it;
+	for (it=im.begin(); it!=im.end(); ++it)
+	{
+		///\TODO liberer les GDCM_NAME_SPACE::File a la fin!  // JPR
+		GDCM_NAME_SPACE::File *f = GDCM_NAME_SPACE::File::New();
+		f->SetFileName(*it);
+		f->Load();
+		if (f->IsReadable())
+		{
+			fileVector.push_back(f);
+		} else {
+			lstAux.push_back(*it);
 		}
+	} // for
+			
+	
+	if ((fileVector.size()>1) && (sh->IsCoherent( &fileVector )))
+	{
+			sh->OrderFileList(&fileVector);
+			spacing= sh->GetZSpacing();
+			im.clear();
+			int i;
+			for (i=0; i<fileVector.size(); i++)
+			{
+				im.push_back( (fileVector[i])->GetFileName() );
+			}
+			for (i=0; i<lstAux.size(); i++)
+			{
+				im.push_back( lstAux[i] );
+			}
+	}else {
+		std::sort( im.begin(), im.end() );
 	}
+			
+   return spacing;
 }
-  //======================================================================
+
+
+//======================================================================
+
 
 void GimmickView::ReadImagesNotThreadedInVector(std::vector<vtkImageData*>& s, std::vector<std::string> im, int dimension)
 {