X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FCMakeLists.txt;h=0a044fed096838487b6043b9e4083bcb771068f7;hb=5578995d9a82792833333eeb3dd5c8ecac967293;hp=ede2a00b65e7fab2c484909d60b010e125a0cc35;hpb=d728f5bf2f84610b984236ce1a589abd74f15fd4;p=clitk.git diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt index ede2a00..0a044fe 100644 --- a/tools/CMakeLists.txt +++ b/tools/CMakeLists.txt @@ -1,87 +1,462 @@ - #========================================================= -INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake) +# Add Libraries used in vv and clitk to avoid recompilation +WRAP_GGO(clitkCropImage_GGO_C clitkCropImage.ggo) +add_library(clitkCropImageLib clitkCropImageGenericFilter.cxx ${clitkCropImage_GGO_C}) + +WRAP_GGO(clitkImageConvert_GGO_C clitkImageConvert.ggo) +add_library(clitkImageConvertLib clitkImageConvertGenericFilter.cxx ${clitkImageConvert_GGO_C}) + +WRAP_GGO(clitkBinarizeImage_GGO_C clitkBinarizeImage.ggo) +add_library(clitkBinarizeImageLib clitkBinarizeImageGenericFilter.cxx ${clitkBinarizeImage_GGO_C}) + +WRAP_GGO(clitkProfileImage_GGO_C clitkProfileImage.ggo) +add_library(clitkProfileImageLib clitkProfileImageGenericFilter.cxx ${clitkProfileImage_GGO_C}) + +WRAP_GGO(clitkHistogramImage_GGO_C clitkHistogramImage.ggo) +add_library(clitkHistogramImageLib clitkHistogramImageGenericFilter.cxx ${clitkHistogramImage_GGO_C}) + +WRAP_GGO(clitkImageArithm_GGO_C clitkImageArithm.ggo) +add_library(clitkImageArithmImageLib clitkImageArithmGenericFilter.cxx ${clitkImageArithm_GGO_C}) + +WRAP_GGO(clitkVectorArithm_GGO_C clitkVectorArithm.ggo) +add_library(clitkVectorArithmLib clitkVectorArithmGenericFilter.cxx ${clitkVectorArithm_GGO_C}) + +WRAP_GGO(clitkMIP_GGO_C clitkMIP.ggo) +add_library(clitkMIPLib clitkMIPGenericFilter.cxx ${clitkMIP_GGO_C}) + +WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo) +add_library(clitkMedianImageFilterLib clitkMedianImageGenericFilter.cxx ${clitkMedianImageFilter_GGO_C}) + #========================================================= +if(CLITK_BUILD_TOOLS) + + WRAP_GGO(clitkDicomInfo_GGO_C clitkDicomInfo.ggo) + add_executable(clitkDicomInfo clitkDicomInfo.cxx ${clitkDicomInfo_GGO_C}) + target_link_libraries(clitkDicomInfo clitkCommon) + # set_target_properties(clitkDicomInfo + # PROPERTIES + # LINK_INTERFACE_LIBRARIES "" + # ) + set(TOOLS_INSTALL clitkDicomInfo) + + WRAP_GGO(clitkDicom2Image_GGO_C clitkDicom2Image.ggo) + add_executable(clitkDicom2Image clitkDicom2Image.cxx ${clitkDicom2Image_GGO_C}) + target_link_libraries(clitkDicom2Image clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicom2Image) + + WRAP_GGO(clitkDicomWave2Text_GGO_C clitkDicomWave2Text.ggo) + add_executable(clitkDicomWave2Text clitkDicomWave2Text.cxx ${clitkDicomWave2Text_GGO_C}) + target_link_libraries(clitkDicomWave2Text clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomWave2Text) + + WRAP_GGO(clitkImageInfo_GGO_C clitkImageInfo.ggo) + add_executable(clitkImageInfo clitkImageInfo.cxx ${clitkImageInfo_GGO_C}) + target_link_libraries(clitkImageInfo clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageInfo) + + WRAP_GGO(clitkScintivolStats_GGO_C clitkScintivolStats.ggo) + add_executable(clitkScintivolStats clitkScintivolStats.cxx ${clitkScintivolStats_GGO_C}) + target_link_libraries(clitkScintivolStats clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkScintivolStats) + + add_executable(clitkImageConvert clitkImageConvert.cxx) + target_link_libraries(clitkImageConvert clitkImageConvertLib clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageConvert) + + add_executable(clitkBinarizeImage clitkBinarizeImage.cxx) + target_link_libraries(clitkBinarizeImage clitkBinarizeImageLib clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinarizeImage) + + add_executable(clitkProfileImage clitkProfileImage.cxx) + target_link_libraries(clitkProfileImage clitkProfileImageLib clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkProfileImage) + + add_executable(clitkHistogramImage clitkHistogramImage.cxx) + target_link_libraries(clitkHistogramImage clitkHistogramImageLib clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkHistogramImage) + + WRAP_GGO(clitkVFResample_GGO_C clitkVFResample.ggo) + add_executable(clitkVFResample clitkVFResample.cxx clitkVFResampleGenericFilter.cxx ${clitkVFResample_GGO_C}) + target_link_libraries(clitkVFResample clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFResample) + + WRAP_GGO(clitkVFInterpolate_GGO_C clitkVFInterpolate.ggo) + add_executable(clitkVFInterpolate clitkVFInterpolate.cxx clitkVFInterpolateGenericFilter.cxx ${clitkVFInterpolate_GGO_C}) + target_link_libraries(clitkVFInterpolate clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFInterpolate) + + WRAP_GGO(clitkImageCreate_GGO_C clitkImageCreate.ggo) + add_executable(clitkImageCreate clitkImageCreate.cxx ${clitkImageCreate_GGO_C}) + target_link_libraries(clitkImageCreate clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageCreate) + + WRAP_GGO(clitkZeroVF_GGO_C clitkZeroVF.ggo) + add_executable(clitkZeroVF clitkZeroVF.cxx ${clitkZeroVF_GGO_C} clitkZeroVFGenericFilter.cxx) + target_link_libraries(clitkZeroVF clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkZeroVF) + + WRAP_GGO(clitkSplitImage_GGO_C clitkSplitImage.ggo) + add_executable(clitkSplitImage clitkSplitImage.cxx clitkSplitImageGenericFilter.cxx ${clitkSplitImage_GGO_C}) + target_link_libraries(clitkSplitImage clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSplitImage) + + WRAP_GGO(clitkWriteDicomSeries_GGO_C clitkWriteDicomSeries.ggo) + add_executable(clitkWriteDicomSeries clitkWriteDicomSeries.cxx ${clitkWriteDicomSeries_GGO_C}) + target_link_libraries(clitkWriteDicomSeries clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkWriteDicomSeries) + + WRAP_GGO(clitkSpect2Dicom_GGO_C clitkSpect2Dicom.ggo) + add_executable(clitkSpect2Dicom clitkSpect2Dicom.cxx ${clitkSpect2Dicom_GGO_C}) + target_link_libraries(clitkSpect2Dicom clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSpect2Dicom) + + WRAP_GGO(clitkChangeDicomTag_GGO_C clitkChangeDicomTag.ggo) + add_executable(clitkChangeDicomTag clitkChangeDicomTag.cxx ${clitkChangeDicomTag_GGO_C}) + target_link_libraries(clitkChangeDicomTag clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeDicomTag) + + WRAP_GGO(clitkGateSimulation2Dicom_GGO_C clitkGateSimulation2Dicom.ggo) + add_executable(clitkGateSimulation2Dicom clitkGateSimulation2Dicom.cxx ${clitkGateSimulation2Dicom_GGO_C}) + target_link_libraries(clitkGateSimulation2Dicom clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkGateSimulation2Dicom) + + WRAP_GGO(clitkPartitionEnergyWindowDicom_GGO_C clitkPartitionEnergyWindowDicom.ggo) + add_executable(clitkPartitionEnergyWindowDicom clitkPartitionEnergyWindowDicom.cxx ${clitkPartitionEnergyWindowDicom_GGO_C}) + target_link_libraries(clitkPartitionEnergyWindowDicom clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPartitionEnergyWindowDicom) + + WRAP_GGO(clitkUpdateVRTagDicom_GGO_C clitkUpdateVRTagDicom.ggo) + add_executable(clitkUpdateVRTagDicom clitkUpdateVRTagDicom.cxx ${clitkUpdateVRTagDicom_GGO_C}) + target_link_libraries(clitkUpdateVRTagDicom clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkUpdateVRTagDicom) + + WRAP_GGO(clitkImage2DicomDose_GGO_C clitkImage2DicomDose.ggo) + add_executable(clitkImage2DicomDose clitkImage2DicomDose.cxx ${clitkImage2DicomDose_GGO_C}) + target_link_libraries(clitkImage2DicomDose clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImage2DicomDose) + + WRAP_GGO(clitkMedianTemporalDimension_GGO_C clitkMedianTemporalDimension.ggo) + add_executable(clitkMedianTemporalDimension clitkMedianTemporalDimension.cxx + ${clitkMedianTemporalDimension_GGO_C}) + target_link_libraries(clitkMedianTemporalDimension clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianTemporalDimension) + + WRAP_GGO(clitkWarpImage_GGO_C clitkWarpImage.ggo) + add_executable(clitkWarpImage clitkWarpImage.cxx ${clitkWarpImage_GGO_C} clitkWarpImageGenericFilter.cxx) + target_link_libraries(clitkWarpImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkWarpImage) + + WRAP_GGO(clitkInvertVF_GGO_C clitkInvertVF.ggo) + add_executable(clitkInvertVF clitkInvertVF.cxx ${clitkInvertVF_GGO_C}) + target_link_libraries(clitkInvertVF clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkInvertVF) + + WRAP_GGO(clitkAffineTransform_GGO_C clitkAffineTransform.ggo) + add_library(clitkAffineTransformLib clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C}) + add_executable(clitkAffineTransform clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C}) + target_link_libraries(clitkAffineTransform clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAffineTransform) + + WRAP_GGO(clitkElastixTransformToMatrix_GGO_C clitkElastixTransformToMatrix.ggo) + add_executable(clitkElastixTransformToMatrix clitkElastixTransformToMatrix.cxx ${clitkElastixTransformToMatrix_GGO_C}) + target_link_libraries(clitkElastixTransformToMatrix clitkAffineTransformLib clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkElastixTransformToMatrix) + + WRAP_GGO(clitkMatrixToElastixTransform_GGO_C clitkMatrixToElastixTransform.ggo) + add_executable(clitkMatrixToElastixTransform clitkMatrixToElastixTransform.cxx ${clitkMatrixToElastixTransform_GGO_C}) + target_link_libraries(clitkMatrixToElastixTransform clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixToElastixTransform) + + WRAP_GGO(clitkMatrixMultiply_GGO_C clitkMatrixMultiply.ggo) + add_executable(clitkMatrixMultiply clitkMatrixMultiply.cxx ${clitkMatrixMultiply_GGO_C}) + target_link_libraries(clitkMatrixMultiply clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixMultiply) + + WRAP_GGO(clitkMatrixInverse_GGO_C clitkMatrixInverse.ggo) + add_executable(clitkMatrixInverse clitkMatrixInverse.cxx ${clitkMatrixInverse_GGO_C}) + target_link_libraries(clitkMatrixInverse clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixInverse) + + WRAP_GGO(clitkSetBackground_GGO_C clitkSetBackground.ggo) + add_executable(clitkSetBackground clitkSetBackground.cxx clitkSetBackgroundGenericFilter.cxx ${clitkSetBackground_GGO_C}) + target_link_libraries(clitkSetBackground clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSetBackground) + + WRAP_GGO(clitkGammaIndex_GGO_C clitkGammaIndex.ggo) + add_executable(clitkGammaIndex clitkGammaIndex.cxx ${clitkGammaIndex_GGO_C}) + target_link_libraries(clitkGammaIndex clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkGammaIndex) + + add_executable(clitkImageArithm clitkImageArithm.cxx) + target_link_libraries(clitkImageArithm clitkImageArithmImageLib clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageArithm) + + add_executable(clitkVectorArithm clitkVectorArithm.cxx) + target_link_libraries(clitkVectorArithm clitkVectorArithmLib clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorArithm) + + WRAP_GGO(clitkUnsharpMask_GGO_C clitkUnsharpMask.ggo) + add_executable(clitkUnsharpMask clitkUnsharpMask.cxx ${clitkUnsharpMask_GGO_C}) + target_link_libraries(clitkUnsharpMask clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkUnsharpMask) + + WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo) + add_executable(clitkMedianImageFilter clitkMedianImageFilter.cxx ${clitkMedianImageFilter_GGO_C}) + target_link_libraries(clitkMedianImageFilter clitkMedianImageFilterLib clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianImageFilter) + + WRAP_GGO(clitkMinMaxMask_GGO_C clitkMinMaxMask.ggo) + add_executable(clitkMinMaxMask clitkMinMaxMask.cxx ${clitkMinMaxMask_GGO_C}) + target_link_libraries(clitkMinMaxMask clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMinMaxMask) + + WRAP_GGO(clitkAutoCrop_GGO_C clitkAutoCrop.ggo) + add_executable(clitkAutoCrop clitkAutoCrop.cxx ${clitkAutoCrop_GGO_C}) + target_link_libraries(clitkAutoCrop clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAutoCrop) + + WRAP_GGO(clitkDicomRTStruct2Image_GGO_C clitkDicomRTStruct2Image.ggo) + add_executable(clitkDicomRTStruct2Image clitkDicomRTStruct2Image.cxx ${clitkDicomRTStruct2Image_GGO_C}) + target_link_libraries(clitkDicomRTStruct2Image clitkDicomRTStruct) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTStruct2Image) + + if(CLITK_USE_SYSTEM_GDCM) + WRAP_GGO(clitkImage2DicomRTStruct_GGO_C clitkImage2DicomRTStruct.ggo) + add_executable(clitkImage2DicomRTStruct clitkImage2DicomRTStruct.cxx ${clitkImage2DicomRTStruct_GGO_C}) + target_link_libraries(clitkImage2DicomRTStruct clitkDicomRTStruct) + + #include pugiXML to parse XML + WRAP_GGO(clitkXml2DicomRTStruct_GGO_C clitkXml2DicomRTStruct.ggo) + add_executable(clitkXml2DicomRTStruct ../utilities/pugixml/pugixml.cpp clitkXml2DicomRTStruct.cxx ${clitkXml2DicomRTStruct_GGO_C}) + target_link_libraries(clitkXml2DicomRTStruct clitkDicomRTStruct) + endif() + + WRAP_GGO(clitkComposeVF_GGO_C clitkComposeVF.ggo) + add_executable(clitkComposeVF clitkComposeVFGenericFilter.cxx clitkComposeVF.cxx ${clitkComposeVF_GGO_C}) + target_link_libraries(clitkComposeVF clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkComposeVF) + + WRAP_GGO(clitkMergeSequence_GGO_C clitkMergeSequence.ggo) + add_executable(clitkMergeSequence clitkMergeSequence.cxx clitkMergeSequenceGenericFilter.cxx ${clitkMergeSequence_GGO_C}) + target_link_libraries(clitkMergeSequence clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeSequence) + + WRAP_GGO(clitkBackProjectImage_GGO_C clitkBackProjectImage.ggo) + add_executable(clitkBackProjectImage clitkBackProjectImage.cxx clitkBackProjectImageGenericFilter.cxx ${clitkBackProjectImage_GGO_C}) + target_link_libraries(clitkBackProjectImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBackProjectImage) + + add_executable(clitkCropImage clitkCropImage.cxx ${clitkCropImage_GGO_C}) + target_link_libraries(clitkCropImage clitkCropImageLib clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkCropImage) + + # WRAP_GGO(clitkExtractSlice_GGO_C clitkExtractSlice.ggo) + # add_executable(clitkExtractSlice clitkExtractSlice.cxx clitkExtractSliceGenericFilter.cxx ${clitkExtractSlice_GGO_C}) + # target_link_libraries(clitkExtractSlice clitkCommon) + #set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkExtractSlice) + + WRAP_GGO(clitkFlipImage_GGO_C clitkFlipImage.ggo) + add_executable(clitkFlipImage clitkFlipImage.cxx clitkFlipImageGenericFilter.cxx ${clitkFlipImage_GGO_C}) + target_link_libraries(clitkFlipImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkFlipImage) + + WRAP_GGO(clitkMirrorPadImage_GGO_C clitkMirrorPadImage.ggo) + add_executable(clitkMirrorPadImage clitkMirrorPadImage.cxx clitkMirrorPadImageGenericFilter.cxx ${clitkMirrorPadImage_GGO_C}) + target_link_libraries(clitkMirrorPadImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMirrorPadImage) + + WRAP_GGO(clitkImageMoment_GGO_C clitkImageMoment.ggo) + add_executable(clitkImageMoment clitkImageMoment.cxx clitkImageMomentGenericFilter.cxx ${clitkImageMoment_GGO_C}) + target_link_libraries(clitkImageMoment clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageMoment) + + WRAP_GGO(clitkImageStatistics_GGO_C clitkImageStatistics.ggo) + add_executable(clitkImageStatistics clitkImageStatistics.cxx clitkImageStatisticsGenericFilter.cxx ${clitkImageStatistics_GGO_C}) + target_link_libraries(clitkImageStatistics clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageStatistics) + + WRAP_GGO(clitkSUVPeak_GGO_C clitkSUVPeak.ggo) + add_executable(clitkSUVPeak clitkSUVPeak.cxx clitkSUVPeakGenericFilter.cxx ${clitkSUVPeak_GGO_C}) + target_link_libraries(clitkSUVPeak clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSUVPeak) + + WRAP_GGO(clitkRTStructStatistics_GGO_C clitkRTStructStatistics.ggo) + add_executable(clitkRTStructStatistics clitkRTStructStatistics.cxx clitkRTStructStatisticsGenericFilter.cxx ${clitkRTStructStatistics_GGO_C}) + target_link_libraries(clitkRTStructStatistics clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkRTStructStatistics) + + WRAP_GGO(clitkVFConvert_GGO_C clitkVFConvert.ggo) + add_executable(clitkVFConvert clitkVFConvert.cxx clitkVFConvertGenericFilter.cxx ${clitkVFConvert_GGO_C}) + target_link_libraries(clitkVFConvert clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFConvert) + + WRAP_GGO(clitkImageToVectorImage_GGO_C clitkImageToVectorImage.ggo) + add_executable(clitkImageToVectorImage clitkImageToVectorImage.cxx clitkImageToVectorImageGenericFilter.cxx ${clitkImageToVectorImage_GGO_C}) + target_link_libraries(clitkImageToVectorImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageToVectorImage) + + WRAP_GGO(clitkVectorImageToImage_GGO_C clitkVectorImageToImage.ggo) + add_executable(clitkVectorImageToImage clitkVectorImageToImage.cxx clitkVectorImageToImageGenericFilter.cxx ${clitkVectorImageToImage_GGO_C}) + target_link_libraries(clitkVectorImageToImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorImageToImage) + + WRAP_GGO(clitkNVectorImageTo4DImage_GGO_C clitkNVectorImageTo4DImage.ggo) + add_executable(clitkNVectorImageTo4DImage clitkNVectorImageTo4DImage.cxx clitkNVectorImageTo4DImageGenericFilter.cxx ${clitkNVectorImageTo4DImage_GGO_C}) + target_link_libraries(clitkNVectorImageTo4DImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkNVectorImageTo4DImage) + + WRAP_GGO(clitk4DImageToNVectorImage_GGO_C clitk4DImageToNVectorImage.ggo) + add_executable(clitk4DImageToNVectorImage clitk4DImageToNVectorImage.cxx clitk4DImageToNVectorImageGenericFilter.cxx ${clitk4DImageToNVectorImage_GGO_C}) + target_link_libraries(clitk4DImageToNVectorImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitk4DImageToNVectorImage) + + add_executable(clitkMIP clitkMIP.cxx clitkMIPGenericFilter.cxx) + target_link_libraries(clitkMIP clitkMIPLib clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMIP) + + WRAP_GGO(clitkSum_GGO_C clitkSum.ggo) + add_executable(clitkSum clitkSum.cxx ${clitkSum_GGO_C}) + target_link_libraries(clitkSum clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSum) + + WRAP_GGO(clitkExtrude_GGO_C clitkExtrude.ggo) + add_executable(clitkExtrude clitkExtrude.cxx ${clitkExtrude_GGO_C}) + target_link_libraries(clitkExtrude clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkExtrude) + + WRAP_GGO(clitkTransformLandmarks_GGO_C clitkTransformLandmarks.ggo) + add_executable(clitkTransformLandmarks clitkTransformLandmarks.cxx ${clitkTransformLandmarks_GGO_C}) + target_link_libraries(clitkTransformLandmarks clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkTransformLandmarks) + + WRAP_GGO(clitkMaskLandmarks_GGO_C clitkMaskLandmarks.ggo) + add_executable(clitkMaskLandmarks clitkMaskLandmarks.cxx ${clitkMaskLandmarks_GGO_C}) + target_link_libraries(clitkMaskLandmarks clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskLandmarks) + + WRAP_GGO(clitkJacobianImage_GGO_C clitkJacobianImage.ggo) + add_executable(clitkJacobianImage clitkJacobianImage.cxx clitkJacobianImageGenericFilter.cxx ${clitkJacobianImage_GGO_C}) + target_link_libraries(clitkJacobianImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkJacobianImage) -SET(clitkGGO_SRC - clitkImageResample_ggo.c - ) + WRAP_GGO(clitkPadImage_GGO_C clitkPadImage.ggo) + add_executable(clitkPadImage clitkPadImage.cxx clitkPadImageGenericFilter.cxx ${clitkPadImage_GGO_C}) + target_link_libraries(clitkPadImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPadImage) -ADD_LIBRARY(clitkGGO STATIC ${clitkGGO_SRC}) + WRAP_GGO(clitkCatImage_GGO_C clitkCatImage.ggo) + add_executable(clitkCatImage clitkCatImage.cxx ${clitkCatImage_GGO_C}) + target_link_libraries(clitkCatImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkCatImage) -ADD_EXECUTABLE(clitkDicomInfo clitkDicomInfo.cxx clitkDicomInfo_ggo.c) -TARGET_LINK_LIBRARIES(clitkDicomInfo clitkCommon ITKIO) + WRAP_GGO(clitkAnisotropicDiffusion_GGO_C clitkAnisotropicDiffusion.ggo) + add_executable(clitkAnisotropicDiffusion clitkAnisotropicDiffusion.cxx + clitkAnisotropicDiffusionGenericFilter.cxx + ${clitkAnisotropicDiffusion_GGO_C}) + target_link_libraries(clitkAnisotropicDiffusion clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAnisotropicDiffusion) -ADD_EXECUTABLE(clitkImageInfo clitkImageInfo.cxx clitkImageInfo_ggo.c) -TARGET_LINK_LIBRARIES(clitkImageInfo clitkCommon ITKIO) + WRAP_GGO(clitkChangeImageInfo_GGO_C clitkChangeImageInfo.ggo) + add_executable(clitkChangeImageInfo clitkChangeImageInfo.cxx + clitkChangeImageInfoGenericFilter.cxx + ${clitkChangeImageInfo_GGO_C}) + target_link_libraries(clitkChangeImageInfo clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeImageInfo) -ADD_EXECUTABLE(clitkImageConvert clitkImageConvert.cxx clitkImageConvert_ggo.c ) -TARGET_LINK_LIBRARIES(clitkImageConvert clitkCommon ITKIO clitkFilters) + WRAP_GGO(clitkMergeAsciiDoseActor_GGO_C clitkMergeAsciiDoseActor.ggo) + add_executable(clitkMergeAsciiDoseActor clitkMergeAsciiDoseActor.cxx ${clitkMergeAsciiDoseActor_GGO_C}) + target_link_libraries(clitkMergeAsciiDoseActor ITKCommon clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeAsciiDoseActor) -ADD_EXECUTABLE(clitkImageResample clitkImageResample.cxx clitkImageResample_ggo.c) -TARGET_LINK_LIBRARIES(clitkImageResample clitkCommon ITKIO clitkFilters) + WRAP_GGO(clitkImageUncertainty_GGO_C clitkImageUncertainty.ggo) + add_executable(clitkImageUncertainty clitkImageUncertainty.cxx clitkImageUncertainty_ggo.c) + target_link_libraries(clitkImageUncertainty clitkCommon ${ITK_LIBRARIES}) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageUncertainty) -ADD_EXECUTABLE(clitkVFResample clitkVFResample.cxx clitkImageResample_ggo.c) -TARGET_LINK_LIBRARIES(clitkVFResample clitkCommon ITKIO clitkFilters) + WRAP_GGO(clitkNormalizeImageFilter_GGO_C clitkNormalizeImageFilter.ggo) + add_executable(clitkNormalizeImageFilter clitkNormalizeImageFilter.cxx ${clitkNormalizeImageFilter_GGO_C}) + target_link_libraries(clitkNormalizeImageFilter clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkNormalizeImageFilter) -ADD_EXECUTABLE(clitkImageArithm clitkImageArithm.cxx clitkImageArithm_ggo.c) -TARGET_LINK_LIBRARIES(clitkImageArithm clitkCommon ITKIO ITKStatistics clitkFilters) + WRAP_GGO(clitkImageGradientMagnitude_GGO_C clitkImageGradientMagnitude.ggo) + add_executable(clitkImageGradientMagnitude clitkImageGradientMagnitude.cxx ${clitkImageGradientMagnitude_GGO_C}) + target_link_libraries(clitkImageGradientMagnitude clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageGradientMagnitude) -ADD_EXECUTABLE(clitkImageCreate clitkImageCreate.cxx clitkImageCreate_ggo.c) -TARGET_LINK_LIBRARIES(clitkImageCreate clitkCommon ITKStatistics ITKIO) + WRAP_GGO(clitkImageLaplacian_GGO_C clitkImageLaplacian.ggo) + add_executable(clitkImageLaplacian clitkImageLaplacian.cxx ${clitkImageLaplacian_GGO_C}) + target_link_libraries(clitkImageLaplacian clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageLaplacian) -ADD_EXECUTABLE(clitkImageFillRegion clitkImageFillRegion.cxx clitkImageFillRegion_ggo.c) -TARGET_LINK_LIBRARIES(clitkImageFillRegion clitkCommon -ITKIO ITKStatistics clitkFilters) + WRAP_GGO(clitkImageIntensityWindowing_GGO_C clitkImageIntensityWindowing.ggo) + add_executable(clitkImageIntensityWindowing clitkImageIntensityWindowing.cxx ${clitkImageIntensityWindowing_GGO_C}) + target_link_libraries(clitkImageIntensityWindowing clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageIntensityWindowing) -ADD_EXECUTABLE(clitkZeroVF clitkZeroVF.cxx clitkZeroVF_ggo.c -clitkZeroVFGenericFilter.cxx) -TARGET_LINK_LIBRARIES(clitkZeroVF clitkCommon ITKStatistics ITKIO ) + WRAP_GGO(clitkMaskOfIntegratedIntensity_GGO_C clitkMaskOfIntegratedIntensity.ggo) + add_executable(clitkMaskOfIntegratedIntensity clitkMaskOfIntegratedIntensity.cxx ${clitkMaskOfIntegratedIntensity_GGO_C}) + target_link_libraries(clitkMaskOfIntegratedIntensity clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskOfIntegratedIntensity) -ADD_EXECUTABLE(clitkImageExtractLine clitkImageExtractLine.cxx clitkImageExtractLine_ggo.c) -TARGET_LINK_LIBRARIES(clitkImageExtractLine clitkCommon ITKStatistics ITKIO) -ADD_EXECUTABLE(clitkSplitImage clitkSplitImage.cxx clitkSplitImage_ggo.c - ) -TARGET_LINK_LIBRARIES(clitkSplitImage ITKBasicFilters clitkCommon ITKIO -clitkFilters) + WRAP_GGO(clitkBlurImage_GGO_C clitkBlurImage.ggo) + add_executable(clitkBlurImage clitkBlurImage.cxx ${clitkBlurImage_GGO_C}) + target_link_libraries(clitkBlurImage clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBlurImage) -ADD_EXECUTABLE(clitkVFMerge clitkVFMerge.cxx clitkVFMerge_ggo.c) -TARGET_LINK_LIBRARIES(clitkVFMerge ITKBasicFilters clitkCommon ITKIO ) + #========================================================= + option(CLITK_USE_ROOT "Build experimental tools using root" OFF) + if (CLITK_USE_ROOT) + find_package(ROOT REQUIRED) + if(ROOT_FOUND) + message(STATUS "ROOT found : ${ROOT_LIBRARY_DIR} ${ROOT_INCLUDE_DIR} ${ROOT_LIBRARIES}") + else(ROOT_FOUND) + message(FATAL_ERROR + "Cannot build without ROOT. Please set ROOTSYS environement variable.") + endif(ROOT_FOUND) + include_directories(${ROOT_INCLUDE_DIR}) + link_directories(${ROOT_LIBRARY_DIR}) + WRAP_GGO(clitkMergeRootFiles_GGO_C clitkMergeRootFiles.ggo) + add_executable(clitkMergeRootFiles clitkMergeRootFiles.cxx GateMergeManager.cc ${clitkMergeRootFiles_GGO_C}) + target_link_libraries(clitkMergeRootFiles ${ROOT_LIBRARIES}) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeRootFiles) + endif() + #========================================================= -ADD_EXECUTABLE(clitkWriteDicomSeries clitkWriteDicomSeries.cxx clitkWriteDicomSeries_ggo.c) -TARGET_LINK_LIBRARIES(clitkWriteDicomSeries clitkCommon ITKIO clitkFilters) -ADD_EXECUTABLE(clitkAverageTemporalDimension clitkAverageTemporalDimension.cxx clitkAverageTemporalDimension_ggo.c) -TARGET_LINK_LIBRARIES(clitkAverageTemporalDimension clitkCommon ITKIO -clitkFilters) + #========================================================= + if(CLITK_EXPERIMENTAL) + WRAP_GGO(clitkBinaryImageToMesh_GGO_C clitkBinaryImageToMesh.ggo) + add_executable(clitkBinaryImageToMesh clitkBinaryImageToMesh.cxx ${clitkBinaryImageToMesh_GGO_C}) + target_link_libraries(clitkBinaryImageToMesh clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinaryImageToMesh) -ADD_EXECUTABLE(clitkWarpImage clitkWarpImage.cxx clitkWarpImage_ggo.c -clitkWarpImageGenericFilter.cxx) -TARGET_LINK_LIBRARIES(clitkWarpImage ITKBasicFilters clitkCommon ITKIO -) + WRAP_GGO(clitkMeshToBinaryImage_GGO_C clitkMeshToBinaryImage.ggo) + add_executable(clitkMeshToBinaryImage clitkMeshToBinaryImage.cxx ${clitkMeshToBinaryImage_GGO_C}) + target_link_libraries(clitkMeshToBinaryImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshToBinaryImage) -ADD_EXECUTABLE(clitkInvertVF clitkInvertVF.cxx clitkInvertVF_ggo.c) -TARGET_LINK_LIBRARIES(clitkInvertVF clitkCommon ITKIO clitkFilters) + WRAP_GGO(clitkMeshViewer_GGO_C clitkMeshViewer.ggo) + add_executable(clitkMeshViewer clitkMeshViewer.cxx ${clitkMeshViewer_GGO_C}) + target_link_libraries(clitkMeshViewer clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshViewer) + endif(CLITK_EXPERIMENTAL) + #========================================================= -ADD_EXECUTABLE(clitkAffineTransform clitkAffineTransform.cxx clitkAffineTransform_ggo.c) -TARGET_LINK_LIBRARIES(clitkAffineTransform clitkCommon ITKIO clitkFilters) -#ADD_EXECUTABLE(clitkSignalMeanPositionTracking clitkSignalMeanPositionTracking.cxx clitkSignalMeanPositionFilter.cxx clitkEllipse.cxx clitkSignalMeanPositionTracking_ggo.c) -#TARGET_LINK_LIBRARIES(clitkSignalMeanPositionTracking clitkCommon ITKIO ) + #========================================================= + WRAP_GGO(clitkDice_GGO_C clitkDice.ggo) + add_executable(clitkDice clitkDice.cxx ${clitkDice_GGO_C}) + target_link_libraries(clitkDice clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES} ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDice) -#ADD_EXECUTABLE(clitkSignalFilter clitkSignalFilter.cxx clitkSignalFilter_ggo.c) -#TARGET_LINK_LIBRARIES(clitkSignalFilter clitkCommon ITKIO ) + WRAP_GGO(clitkDicomRTPlan2Gate_GGO_C clitkDicomRTPlan2Gate.ggo) + add_executable(clitkDicomRTPlan2Gate clitkDicomRTPlan2Gate.cxx clitkDicomRTPlan2Gate_ggo.c) + target_link_libraries(clitkDicomRTPlan2Gate clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTPlan2Gate) + #========================================================= -ADD_EXECUTABLE(clitkSetBackground clitkSetBackground.cxx -clitkSetBackgroundGenericFilter.cxx clitkSetBackground_ggo.c) -TARGET_LINK_LIBRARIES(clitkSetBackground clitkCommon ITKIO ) -ADD_EXECUTABLE(clitkGuerreroVentilation clitkGuerreroVentilation.cxx - clitkGuerreroVentilation_ggo.c -) -TARGET_LINK_LIBRARIES(clitkGuerreroVentilation clitkCommon ITKIO ITKBasicFilters -clitkFilters) + install(TARGETS ${TOOLS_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE) -ADD_EXECUTABLE(clitkBinarizeImage clitkBinarizeImage.cxx) -TARGET_LINK_LIBRARIES(clitkBinarizeImage clitkCommon ITKIO clitkFilters) +endif(CLITK_BUILD_TOOLS)