X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FCMakeLists.txt;h=34bb132d7bf6dcd6a695bc5fa688bb99c2206cf3;hb=b50c4ae3e2850ad593d2c991b56e04ed22748f99;hp=6bd72a3e62b55397fbaa4fb98de1aa2ce9e9a0a2;hpb=b133f36e1414bcf74518050a4a8e36d32d642981;p=clitk.git diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt index 6bd72a3..34bb132 100644 --- a/tools/CMakeLists.txt +++ b/tools/CMakeLists.txt @@ -9,15 +9,18 @@ add_library(clitkImageConvertLib clitkImageConvertGenericFilter.cxx ${clitkImage WRAP_GGO(clitkBinarizeImage_GGO_C clitkBinarizeImage.ggo) add_library(clitkBinarizeImageLib clitkBinarizeImageGenericFilter.cxx ${clitkBinarizeImage_GGO_C}) +WRAP_GGO(clitkProfileImage_GGO_C clitkProfileImage.ggo) +add_library(clitkProfileImageLib clitkProfileImageGenericFilter.cxx ${clitkProfileImage_GGO_C}) + +WRAP_GGO(clitkHistogramImage_GGO_C clitkHistogramImage.ggo) +add_library(clitkHistogramImageLib clitkHistogramImageGenericFilter.cxx ${clitkHistogramImage_GGO_C}) + WRAP_GGO(clitkImageArithm_GGO_C clitkImageArithm.ggo) add_library(clitkImageArithmImageLib clitkImageArithmGenericFilter.cxx ${clitkImageArithm_GGO_C}) WRAP_GGO(clitkVectorArithm_GGO_C clitkVectorArithm.ggo) add_library(clitkVectorArithmLib clitkVectorArithmGenericFilter.cxx ${clitkVectorArithm_GGO_C}) -WRAP_GGO(clitkResampleImage_GGO_C clitkResampleImage.ggo) -add_library(clitkResampleImageLib clitkResampleImageGenericFilter.cxx ${clitkResampleImage_GGO_C}) - WRAP_GGO(clitkMIP_GGO_C clitkMIP.ggo) add_library(clitkMIPLib clitkMIPGenericFilter.cxx ${clitkMIP_GGO_C}) @@ -51,6 +54,11 @@ if(CLITK_BUILD_TOOLS) target_link_libraries(clitkImageInfo clitkCommon) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageInfo) + WRAP_GGO(clitkScintivolStats_GGO_C clitkScintivolStats.ggo) + add_executable(clitkScintivolStats clitkScintivolStats.cxx ${clitkScintivolStats_GGO_C}) + target_link_libraries(clitkScintivolStats clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkScintivolStats) + add_executable(clitkImageConvert clitkImageConvert.cxx) target_link_libraries(clitkImageConvert clitkImageConvertLib clitkCommon) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageConvert) @@ -59,6 +67,14 @@ if(CLITK_BUILD_TOOLS) target_link_libraries(clitkBinarizeImage clitkBinarizeImageLib clitkCommon) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinarizeImage) + add_executable(clitkProfileImage clitkProfileImage.cxx) + target_link_libraries(clitkProfileImage clitkProfileImageLib clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkProfileImage) + + add_executable(clitkHistogramImage clitkHistogramImage.cxx) + target_link_libraries(clitkHistogramImage clitkHistogramImageLib clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkHistogramImage) + WRAP_GGO(clitkVFResample_GGO_C clitkVFResample.ggo) add_executable(clitkVFResample clitkVFResample.cxx clitkVFResampleGenericFilter.cxx ${clitkVFResample_GGO_C}) target_link_libraries(clitkVFResample clitkCommon) @@ -89,6 +105,41 @@ if(CLITK_BUILD_TOOLS) target_link_libraries(clitkWriteDicomSeries clitkCommon ) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkWriteDicomSeries) + WRAP_GGO(clitkImage2Dicom_GGO_C clitkImage2Dicom.ggo) + add_executable(clitkImage2Dicom clitkImage2Dicom.cxx ${clitkImage2Dicom_GGO_C}) + target_link_libraries(clitkImage2Dicom clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImage2Dicom) + + WRAP_GGO(clitkSpect2Dicom_GGO_C clitkSpect2Dicom.ggo) + add_executable(clitkSpect2Dicom clitkSpect2Dicom.cxx ${clitkSpect2Dicom_GGO_C}) + target_link_libraries(clitkSpect2Dicom clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSpect2Dicom) + + WRAP_GGO(clitkChangeDicomTag_GGO_C clitkChangeDicomTag.ggo) + add_executable(clitkChangeDicomTag clitkChangeDicomTag.cxx ${clitkChangeDicomTag_GGO_C}) + target_link_libraries(clitkChangeDicomTag clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeDicomTag) + + WRAP_GGO(clitkGateSimulation2Dicom_GGO_C clitkGateSimulation2Dicom.ggo) + add_executable(clitkGateSimulation2Dicom clitkGateSimulation2Dicom.cxx ${clitkGateSimulation2Dicom_GGO_C}) + target_link_libraries(clitkGateSimulation2Dicom clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkGateSimulation2Dicom) + + WRAP_GGO(clitkPartitionEnergyWindowDicom_GGO_C clitkPartitionEnergyWindowDicom.ggo) + add_executable(clitkPartitionEnergyWindowDicom clitkPartitionEnergyWindowDicom.cxx ${clitkPartitionEnergyWindowDicom_GGO_C}) + target_link_libraries(clitkPartitionEnergyWindowDicom clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPartitionEnergyWindowDicom) + + WRAP_GGO(clitkUpdateVRTagDicom_GGO_C clitkUpdateVRTagDicom.ggo) + add_executable(clitkUpdateVRTagDicom clitkUpdateVRTagDicom.cxx ${clitkUpdateVRTagDicom_GGO_C}) + target_link_libraries(clitkUpdateVRTagDicom clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkUpdateVRTagDicom) + + WRAP_GGO(clitkImage2DicomDose_GGO_C clitkImage2DicomDose.ggo) + add_executable(clitkImage2DicomDose clitkImage2DicomDose.cxx ${clitkImage2DicomDose_GGO_C}) + target_link_libraries(clitkImage2DicomDose clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImage2DicomDose) + WRAP_GGO(clitkMedianTemporalDimension_GGO_C clitkMedianTemporalDimension.ggo) add_executable(clitkMedianTemporalDimension clitkMedianTemporalDimension.cxx ${clitkMedianTemporalDimension_GGO_C}) @@ -106,13 +157,14 @@ if(CLITK_BUILD_TOOLS) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkInvertVF) WRAP_GGO(clitkAffineTransform_GGO_C clitkAffineTransform.ggo) + add_library(clitkAffineTransformLib clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C}) add_executable(clitkAffineTransform clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C}) target_link_libraries(clitkAffineTransform clitkCommon ) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAffineTransform) WRAP_GGO(clitkElastixTransformToMatrix_GGO_C clitkElastixTransformToMatrix.ggo) add_executable(clitkElastixTransformToMatrix clitkElastixTransformToMatrix.cxx ${clitkElastixTransformToMatrix_GGO_C}) - target_link_libraries(clitkElastixTransformToMatrix clitkCommon ) + target_link_libraries(clitkElastixTransformToMatrix clitkAffineTransformLib clitkCommon ) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkElastixTransformToMatrix) WRAP_GGO(clitkMatrixToElastixTransform_GGO_C clitkMatrixToElastixTransform.ggo) @@ -153,20 +205,11 @@ if(CLITK_BUILD_TOOLS) target_link_libraries(clitkUnsharpMask clitkCommon ) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkUnsharpMask) - WRAP_GGO(clitkFooImage_GGO_C clitkFooImage.ggo) - add_executable(clitkFooImage clitkFooImage.cxx ${clitkFooImage_GGO_C}) - target_link_libraries(clitkFooImage clitkCommon ) - set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkFooImage) - WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo) add_executable(clitkMedianImageFilter clitkMedianImageFilter.cxx ${clitkMedianImageFilter_GGO_C}) target_link_libraries(clitkMedianImageFilter clitkMedianImageFilterLib clitkCommon) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianImageFilter) - add_executable(clitkResampleImage clitkResampleImage.cxx) - target_link_libraries(clitkResampleImage clitkResampleImageLib clitkCommon) - set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkResampleImage) - WRAP_GGO(clitkMinMaxMask_GGO_C clitkMinMaxMask.ggo) add_executable(clitkMinMaxMask clitkMinMaxMask.cxx ${clitkMinMaxMask_GGO_C}) target_link_libraries(clitkMinMaxMask clitkCommon ) @@ -186,6 +229,11 @@ if(CLITK_BUILD_TOOLS) WRAP_GGO(clitkImage2DicomRTStruct_GGO_C clitkImage2DicomRTStruct.ggo) add_executable(clitkImage2DicomRTStruct clitkImage2DicomRTStruct.cxx ${clitkImage2DicomRTStruct_GGO_C}) target_link_libraries(clitkImage2DicomRTStruct clitkDicomRTStruct) + + #include pugiXML to parse XML + WRAP_GGO(clitkXml2DicomRTStruct_GGO_C clitkXml2DicomRTStruct.ggo) + add_executable(clitkXml2DicomRTStruct ../utilities/pugixml/pugixml.cpp clitkXml2DicomRTStruct.cxx ${clitkXml2DicomRTStruct_GGO_C}) + target_link_libraries(clitkXml2DicomRTStruct clitkDicomRTStruct) endif() WRAP_GGO(clitkComposeVF_GGO_C clitkComposeVF.ggo) @@ -232,6 +280,16 @@ if(CLITK_BUILD_TOOLS) target_link_libraries(clitkImageStatistics clitkCommon) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageStatistics) + WRAP_GGO(clitkSUVPeak_GGO_C clitkSUVPeak.ggo) + add_executable(clitkSUVPeak clitkSUVPeak.cxx clitkSUVPeakGenericFilter.cxx ${clitkSUVPeak_GGO_C}) + target_link_libraries(clitkSUVPeak clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSUVPeak) + + WRAP_GGO(clitkRTStructStatistics_GGO_C clitkRTStructStatistics.ggo) + add_executable(clitkRTStructStatistics clitkRTStructStatistics.cxx clitkRTStructStatisticsGenericFilter.cxx ${clitkRTStructStatistics_GGO_C}) + target_link_libraries(clitkRTStructStatistics clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkRTStructStatistics) + WRAP_GGO(clitkVFConvert_GGO_C clitkVFConvert.ggo) add_executable(clitkVFConvert clitkVFConvert.cxx clitkVFConvertGenericFilter.cxx ${clitkVFConvert_GGO_C}) target_link_libraries(clitkVFConvert clitkCommon ) @@ -246,11 +304,31 @@ if(CLITK_BUILD_TOOLS) add_executable(clitkVectorImageToImage clitkVectorImageToImage.cxx clitkVectorImageToImageGenericFilter.cxx ${clitkVectorImageToImage_GGO_C}) target_link_libraries(clitkVectorImageToImage clitkCommon) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorImageToImage) + + WRAP_GGO(clitkNVectorImageTo4DImage_GGO_C clitkNVectorImageTo4DImage.ggo) + add_executable(clitkNVectorImageTo4DImage clitkNVectorImageTo4DImage.cxx clitkNVectorImageTo4DImageGenericFilter.cxx ${clitkNVectorImageTo4DImage_GGO_C}) + target_link_libraries(clitkNVectorImageTo4DImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkNVectorImageTo4DImage) + + WRAP_GGO(clitk4DImageToNVectorImage_GGO_C clitk4DImageToNVectorImage.ggo) + add_executable(clitk4DImageToNVectorImage clitk4DImageToNVectorImage.cxx clitk4DImageToNVectorImageGenericFilter.cxx ${clitk4DImageToNVectorImage_GGO_C}) + target_link_libraries(clitk4DImageToNVectorImage clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitk4DImageToNVectorImage) add_executable(clitkMIP clitkMIP.cxx clitkMIPGenericFilter.cxx) target_link_libraries(clitkMIP clitkMIPLib clitkCommon) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMIP) + WRAP_GGO(clitkSum_GGO_C clitkSum.ggo) + add_executable(clitkSum clitkSum.cxx ${clitkSum_GGO_C}) + target_link_libraries(clitkSum clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSum) + + WRAP_GGO(clitkExtrude_GGO_C clitkExtrude.ggo) + add_executable(clitkExtrude clitkExtrude.cxx ${clitkExtrude_GGO_C}) + target_link_libraries(clitkExtrude clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkExtrude) + WRAP_GGO(clitkTransformLandmarks_GGO_C clitkTransformLandmarks.ggo) add_executable(clitkTransformLandmarks clitkTransformLandmarks.cxx ${clitkTransformLandmarks_GGO_C}) target_link_libraries(clitkTransformLandmarks clitkCommon) @@ -320,6 +398,12 @@ if(CLITK_BUILD_TOOLS) target_link_libraries(clitkImageIntensityWindowing clitkCommon ) set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageIntensityWindowing) + WRAP_GGO(clitkMaskOfIntegratedIntensity_GGO_C clitkMaskOfIntegratedIntensity.ggo) + add_executable(clitkMaskOfIntegratedIntensity clitkMaskOfIntegratedIntensity.cxx ${clitkMaskOfIntegratedIntensity_GGO_C}) + target_link_libraries(clitkMaskOfIntegratedIntensity clitkCommon ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskOfIntegratedIntensity) + + WRAP_GGO(clitkBlurImage_GGO_C clitkBlurImage.ggo) add_executable(clitkBlurImage clitkBlurImage.cxx ${clitkBlurImage_GGO_C}) target_link_libraries(clitkBlurImage clitkCommon ) @@ -366,20 +450,15 @@ if(CLITK_BUILD_TOOLS) #========================================================= - if(ITK_VERSION_MAJOR VERSION_LESS 4) - message("clitkDice is not compatible with ITK<4. It will not be built.") - message("clitkDicomRTPlan2Gate is not compatible with GDCM<2 (ITK<4). It will not be built.") - else(ITK_VERSION_MAJOR VERSION_LESS 4) - WRAP_GGO(clitkDice_GGO_C clitkDice.ggo) - add_executable(clitkDice clitkDice.cxx ${clitkDice_GGO_C}) - target_link_libraries(clitkDice clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES} ) - set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDice) - - WRAP_GGO(clitkDicomRTPlan2Gate_GGO_C clitkDicomRTPlan2Gate.ggo) - add_executable(clitkDicomRTPlan2Gate clitkDicomRTPlan2Gate.cxx clitkDicomRTPlan2Gate_ggo.c) - target_link_libraries(clitkDicomRTPlan2Gate clitkCommon) - set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTPlan2Gate) - endif(ITK_VERSION_MAJOR VERSION_LESS 4) + WRAP_GGO(clitkDice_GGO_C clitkDice.ggo) + add_executable(clitkDice clitkDice.cxx ${clitkDice_GGO_C}) + target_link_libraries(clitkDice clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES} ) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDice) + + WRAP_GGO(clitkDicomRTPlan2Gate_GGO_C clitkDicomRTPlan2Gate.ggo) + add_executable(clitkDicomRTPlan2Gate clitkDicomRTPlan2Gate.cxx clitkDicomRTPlan2Gate_ggo.c) + target_link_libraries(clitkDicomRTPlan2Gate clitkCommon) + set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTPlan2Gate) #=========================================================