X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FCMakeLists.txt;h=71afed68452fc840ccbadd37e500e57b08728106;hb=fb9cb668f80d643ac14bf8aa1db8c4eb717547d8;hp=878688e389c54bad6a941c0964f243ab7e7e60b1;hpb=39cfdfd2ea6bd79158d4382420e19f5024a6cbce;p=clitk.git

diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt
index 878688e..71afed6 100644
--- a/tools/CMakeLists.txt
+++ b/tools/CMakeLists.txt
@@ -24,7 +24,9 @@ ADD_LIBRARY(clitkMIPLib clitkMIPGenericFilter.cxx ${clitkMIP_GGO_C})
 WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo)
 ADD_LIBRARY(clitkMedianImageFilterLib clitkMedianImageGenericFilter.cxx ${clitkMedianImageFilter_GGO_C})
 
+#=========================================================
 IF (CLITK_BUILD_TOOLS)
+
   WRAP_GGO(clitkDicomInfo_GGO_C clitkDicomInfo.ggo)
   ADD_EXECUTABLE(clitkDicomInfo clitkDicomInfo.cxx ${clitkDicomInfo_GGO_C})
   TARGET_LINK_LIBRARIES(clitkDicomInfo clitkCommon)
@@ -89,7 +91,7 @@ IF (CLITK_BUILD_TOOLS)
 
   WRAP_GGO(clitkMedianTemporalDimension_GGO_C clitkMedianTemporalDimension.ggo)
   ADD_EXECUTABLE(clitkMedianTemporalDimension clitkMedianTemporalDimension.cxx
-      ${clitkMedianTemporalDimension_GGO_C})
+    ${clitkMedianTemporalDimension_GGO_C})
   TARGET_LINK_LIBRARIES(clitkMedianTemporalDimension clitkCommon )
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianTemporalDimension)
 
@@ -128,7 +130,7 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkSetBackground clitkCommon)
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSetBackground)
 
- WRAP_GGO(clitkGammaIndex_GGO_C clitkGammaIndex.ggo)
+  WRAP_GGO(clitkGammaIndex_GGO_C clitkGammaIndex.ggo)
   ADD_EXECUTABLE(clitkGammaIndex clitkGammaIndex.cxx ${clitkGammaIndex_GGO_C})
   TARGET_LINK_LIBRARIES(clitkGammaIndex clitkCommon)
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkGammaIndex)
@@ -151,10 +153,10 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkFooImage clitkCommon )
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkFooImage)
 
-  #WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo)
-  #ADD_EXECUTABLE(clitkMedianImageFilter clitkMedianImageFilter.cxx ${clitkMedianImageFilter_GGO_C})
-  #TARGET_LINK_LIBRARIES(clitkMedianImageFilter clitkMedianImageFilterLib clitkCommon)
-  #SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianImageFilter)
+  WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo)
+  ADD_EXECUTABLE(clitkMedianImageFilter clitkMedianImageFilter.cxx ${clitkMedianImageFilter_GGO_C})
+  TARGET_LINK_LIBRARIES(clitkMedianImageFilter clitkMedianImageFilterLib clitkCommon)
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianImageFilter)
 
   ADD_EXECUTABLE(clitkResampleImage clitkResampleImage.cxx)
   TARGET_LINK_LIBRARIES(clitkResampleImage clitkResampleImageLib clitkCommon)
@@ -276,22 +278,49 @@ IF (CLITK_BUILD_TOOLS)
 
   WRAP_GGO(clitkAnisotropicDiffusion_GGO_C clitkAnisotropicDiffusion.ggo)
   ADD_EXECUTABLE(clitkAnisotropicDiffusion clitkAnisotropicDiffusion.cxx
-                                           clitkAnisotropicDiffusionGenericFilter.cxx
-                                           ${clitkAnisotropicDiffusion_GGO_C})
+    clitkAnisotropicDiffusionGenericFilter.cxx
+    ${clitkAnisotropicDiffusion_GGO_C})
   TARGET_LINK_LIBRARIES(clitkAnisotropicDiffusion clitkCommon)
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAnisotropicDiffusion)
 
   WRAP_GGO(clitkChangeImageInfo_GGO_C clitkChangeImageInfo.ggo)
   ADD_EXECUTABLE(clitkChangeImageInfo clitkChangeImageInfo.cxx
-                                      clitkChangeImageInfoGenericFilter.cxx
-                                      ${clitkChangeImageInfo_GGO_C})
+    clitkChangeImageInfoGenericFilter.cxx
+    ${clitkChangeImageInfo_GGO_C})
   TARGET_LINK_LIBRARIES(clitkChangeImageInfo clitkCommon)
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeImageInfo)
 
   WRAP_GGO(clitkMergeAsciiDoseActor_GGO_C clitkMergeAsciiDoseActor.ggo)
   ADD_EXECUTABLE(clitkMergeAsciiDoseActor clitkMergeAsciiDoseActor.cxx ${clitkMergeAsciiDoseActor_GGO_C})
   TARGET_LINK_LIBRARIES(clitkMergeAsciiDoseActor ITKCommon clitkCommon)
-
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeAsciiDoseActor)
+
+  WRAP_GGO(clitkImageUncertainty_GGO_C clitkImageUncertainty.ggo)
+  ADD_EXECUTABLE(clitkImageUncertainty clitkImageUncertainty.cxx clitkImageUncertainty_ggo.c)
+  TARGET_LINK_LIBRARIES(clitkImageUncertainty clitkCommon ${ITK_LIBRARIES})
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageUncertainty)
+
+  #=========================================================
+  option(CLITK_USE_ROOT "Build experimental tools using root" OFF)
+  if (CLITK_USE_ROOT)
+    FIND_PACKAGE(ROOT REQUIRED)
+    if(ROOT_FOUND)
+      MESSAGE(STATUS "ROOT found : ${ROOT_LIBRARY_DIR} ${ROOT_INCLUDE_DIR} ${ROOT_LIBRARIES}")
+    ELSE(ROOT_FOUND)
+      MESSAGE(FATAL_ERROR
+        "Cannot build without ROOT.  Please set ROOTSYS environement variable.")
+    endif(ROOT_FOUND)
+    INCLUDE_DIRECTORIES(${ROOT_INCLUDE_DIR})
+    LINK_DIRECTORIES(${ROOT_LIBRARY_DIR})
+    WRAP_GGO(clitkMergeRootFiles_GGO_C clitkMergeRootFiles.ggo)
+    ADD_EXECUTABLE(clitkMergeRootFiles clitkMergeRootFiles.cxx GateMergeManager.cc ${clitkMergeRootFiles_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkMergeRootFiles ${ROOT_LIBRARIES})
+    SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeRootFiles)
+  endif()
+  #=========================================================
+
+
+  #=========================================================
   IF(CLITK_EXPERIMENTAL)
     WRAP_GGO(clitkBinaryImageToMesh_GGO_C clitkBinaryImageToMesh.ggo)
     ADD_EXECUTABLE(clitkBinaryImageToMesh clitkBinaryImageToMesh.cxx ${clitkBinaryImageToMesh_GGO_C})
@@ -308,7 +337,10 @@ IF (CLITK_BUILD_TOOLS)
     TARGET_LINK_LIBRARIES(clitkMeshViewer clitkCommon)
     SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshViewer)
   ENDIF(CLITK_EXPERIMENTAL)
+  #=========================================================
 
+
+  #=========================================================
   IF(ITK_VERSION_MAJOR VERSION_LESS 4)
     MESSAGE("clitkDicomRTPlan2Gate is not compatible with GDCM<2 (ITK<4). It will not be built.")
   ELSE(ITK_VERSION_MAJOR VERSION_LESS 4)
@@ -317,6 +349,8 @@ IF (CLITK_BUILD_TOOLS)
     TARGET_LINK_LIBRARIES(clitkDicomRTPlan2Gate clitkCommon)
     SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTPlan2Gate)
   ENDIF(ITK_VERSION_MAJOR VERSION_LESS 4)
+  #=========================================================
+
 
   INSTALL (TARGETS ${TOOLS_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)