X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FCMakeLists.txt;h=bd565421b4a05493b26ef8bcf3df9b1466c75b4b;hb=54e318c028d7dc8441a263ee71b6757e03d57ecf;hp=c2ee433f42f98ad36c9946412b54d738afb0e024;hpb=894303629c17b343135c71a151bc911e96aedfb8;p=clitk.git diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt index c2ee433..de89527 100644 --- a/tools/CMakeLists.txt +++ b/tools/CMakeLists.txt @@ -1,88 +1,379 @@ - #========================================================= -INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake) +# Add Libraries used in vv and clitk to avoid recompilation +WRAP_GGO(clitkCropImage_GGO_C clitkCropImage.ggo) +ADD_LIBRARY(clitkCropImageLib clitkCropImageGenericFilter.cxx ${clitkCropImage_GGO_C}) + +WRAP_GGO(clitkImageConvert_GGO_C clitkImageConvert.ggo) +ADD_LIBRARY(clitkImageConvertLib clitkImageConvertGenericFilter.cxx ${clitkImageConvert_GGO_C}) + +WRAP_GGO(clitkBinarizeImage_GGO_C clitkBinarizeImage.ggo) +ADD_LIBRARY(clitkBinarizeImageLib clitkBinarizeImageGenericFilter.cxx ${clitkBinarizeImage_GGO_C}) + +WRAP_GGO(clitkImageArithm_GGO_C clitkImageArithm.ggo) +ADD_LIBRARY(clitkImageArithmImageLib clitkImageArithmGenericFilter.cxx ${clitkImageArithm_GGO_C}) + +WRAP_GGO(clitkVectorArithm_GGO_C clitkVectorArithm.ggo) +ADD_LIBRARY(clitkVectorArithmLib clitkVectorArithmGenericFilter.cxx ${clitkVectorArithm_GGO_C}) + +WRAP_GGO(clitkResampleImage_GGO_C clitkResampleImage.ggo) +ADD_LIBRARY(clitkResampleImageLib clitkResampleImageGenericFilter.cxx ${clitkResampleImage_GGO_C}) + +WRAP_GGO(clitkMIP_GGO_C clitkMIP.ggo) +ADD_LIBRARY(clitkMIPLib clitkMIPGenericFilter.cxx ${clitkMIP_GGO_C}) + +WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo) +ADD_LIBRARY(clitkMedianImageFilterLib clitkMedianImageGenericFilter.cxx ${clitkMedianImageFilter_GGO_C}) + #========================================================= +IF (CLITK_BUILD_TOOLS) + + WRAP_GGO(clitkDicomInfo_GGO_C clitkDicomInfo.ggo) + ADD_EXECUTABLE(clitkDicomInfo clitkDicomInfo.cxx ${clitkDicomInfo_GGO_C}) + TARGET_LINK_LIBRARIES(clitkDicomInfo clitkCommon) + # set_target_properties(clitkDicomInfo + # PROPERTIES + # LINK_INTERFACE_LIBRARIES "" + # ) + SET(TOOLS_INSTALL clitkDicomInfo) + + WRAP_GGO(clitkPointRigidRegistration_GGO_C clitkPointRigidRegistration.ggo) + ADD_EXECUTABLE(clitkPointRigidRegistration clitkPointRigidRegistration.cxx ${clitkPointRigidRegistration_GGO_C}) + TARGET_LINK_LIBRARIES(clitkPointRigidRegistration clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPointRigidRegistration) + + WRAP_GGO(clitkDicom2Image_GGO_C clitkDicom2Image.ggo) + ADD_EXECUTABLE(clitkDicom2Image clitkDicom2Image.cxx ${clitkDicom2Image_GGO_C}) + TARGET_LINK_LIBRARIES(clitkDicom2Image clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicom2Image) + + WRAP_GGO(clitkDicomWave2Text_GGO_C clitkDicomWave2Text.ggo) + ADD_EXECUTABLE(clitkDicomWave2Text clitkDicomWave2Text.cxx ${clitkDicomWave2Text_GGO_C}) + TARGET_LINK_LIBRARIES(clitkDicomWave2Text clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomWave2Text) + + WRAP_GGO(clitkImageInfo_GGO_C clitkImageInfo.ggo) + ADD_EXECUTABLE(clitkImageInfo clitkImageInfo.cxx ${clitkImageInfo_GGO_C}) + TARGET_LINK_LIBRARIES(clitkImageInfo clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageInfo) + + ADD_EXECUTABLE(clitkImageConvert clitkImageConvert.cxx) + TARGET_LINK_LIBRARIES(clitkImageConvert clitkImageConvertLib clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageConvert) + + ADD_EXECUTABLE(clitkBinarizeImage clitkBinarizeImage.cxx) + TARGET_LINK_LIBRARIES(clitkBinarizeImage clitkBinarizeImageLib clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinarizeImage) + + WRAP_GGO(clitkVFResample_GGO_C clitkVFResample.ggo) + ADD_EXECUTABLE(clitkVFResample clitkVFResample.cxx clitkVFResampleGenericFilter.cxx ${clitkVFResample_GGO_C}) + TARGET_LINK_LIBRARIES(clitkVFResample clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFResample) + + WRAP_GGO(clitkVFInterpolate_GGO_C clitkVFInterpolate.ggo) + ADD_EXECUTABLE(clitkVFInterpolate clitkVFInterpolate.cxx clitkVFInterpolateGenericFilter.cxx ${clitkVFInterpolate_GGO_C}) + TARGET_LINK_LIBRARIES(clitkVFInterpolate clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFInterpolate) + + WRAP_GGO(clitkImageCreate_GGO_C clitkImageCreate.ggo) + ADD_EXECUTABLE(clitkImageCreate clitkImageCreate.cxx ${clitkImageCreate_GGO_C}) + TARGET_LINK_LIBRARIES(clitkImageCreate clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageCreate) + + WRAP_GGO(clitkZeroVF_GGO_C clitkZeroVF.ggo) + ADD_EXECUTABLE(clitkZeroVF clitkZeroVF.cxx ${clitkZeroVF_GGO_C} clitkZeroVFGenericFilter.cxx) + TARGET_LINK_LIBRARIES(clitkZeroVF clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkZeroVF) + + WRAP_GGO(clitkSplitImage_GGO_C clitkSplitImage.ggo) + ADD_EXECUTABLE(clitkSplitImage clitkSplitImage.cxx clitkSplitImageGenericFilter.cxx ${clitkSplitImage_GGO_C}) + TARGET_LINK_LIBRARIES(clitkSplitImage clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSplitImage) + + WRAP_GGO(clitkWriteDicomSeries_GGO_C clitkWriteDicomSeries.ggo) + ADD_EXECUTABLE(clitkWriteDicomSeries clitkWriteDicomSeries.cxx ${clitkWriteDicomSeries_GGO_C}) + TARGET_LINK_LIBRARIES(clitkWriteDicomSeries clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkWriteDicomSeries) + + WRAP_GGO(clitkMedianTemporalDimension_GGO_C clitkMedianTemporalDimension.ggo) + ADD_EXECUTABLE(clitkMedianTemporalDimension clitkMedianTemporalDimension.cxx + ${clitkMedianTemporalDimension_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMedianTemporalDimension clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianTemporalDimension) + + WRAP_GGO(clitkWarpImage_GGO_C clitkWarpImage.ggo) + ADD_EXECUTABLE(clitkWarpImage clitkWarpImage.cxx ${clitkWarpImage_GGO_C} clitkWarpImageGenericFilter.cxx) + TARGET_LINK_LIBRARIES(clitkWarpImage clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkWarpImage) + + WRAP_GGO(clitkInvertVF_GGO_C clitkInvertVF.ggo) + ADD_EXECUTABLE(clitkInvertVF clitkInvertVF.cxx ${clitkInvertVF_GGO_C}) + TARGET_LINK_LIBRARIES(clitkInvertVF clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkInvertVF) + + WRAP_GGO(clitkAffineTransform_GGO_C clitkAffineTransform.ggo) + ADD_EXECUTABLE(clitkAffineTransform clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C}) + TARGET_LINK_LIBRARIES(clitkAffineTransform clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAffineTransform) + + WRAP_GGO(clitkElastixTransformToMatrix_GGO_C clitkElastixTransformToMatrix.ggo) + ADD_EXECUTABLE(clitkElastixTransformToMatrix clitkElastixTransformToMatrix.cxx ${clitkElastixTransformToMatrix_GGO_C}) + TARGET_LINK_LIBRARIES(clitkElastixTransformToMatrix clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkElastixTransformToMatrix) + + WRAP_GGO(clitkMatrixToElastixTransform_GGO_C clitkMatrixToElastixTransform.ggo) + ADD_EXECUTABLE(clitkMatrixToElastixTransform clitkMatrixToElastixTransform.cxx ${clitkMatrixToElastixTransform_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMatrixToElastixTransform clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixToElastixTransform) + + WRAP_GGO(clitkMatrixMultiply_GGO_C clitkMatrixMultiply.ggo) + ADD_EXECUTABLE(clitkMatrixMultiply clitkMatrixMultiply.cxx ${clitkMatrixMultiply_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMatrixMultiply clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixMultiply) + + WRAP_GGO(clitkMatrixInverse_GGO_C clitkMatrixInverse.ggo) + ADD_EXECUTABLE(clitkMatrixInverse clitkMatrixInverse.cxx ${clitkMatrixInverse_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMatrixInverse clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixInverse) + + WRAP_GGO(clitkSetBackground_GGO_C clitkSetBackground.ggo) + ADD_EXECUTABLE(clitkSetBackground clitkSetBackground.cxx clitkSetBackgroundGenericFilter.cxx ${clitkSetBackground_GGO_C}) + TARGET_LINK_LIBRARIES(clitkSetBackground clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSetBackground) + + WRAP_GGO(clitkGammaIndex_GGO_C clitkGammaIndex.ggo) + ADD_EXECUTABLE(clitkGammaIndex clitkGammaIndex.cxx ${clitkGammaIndex_GGO_C}) + TARGET_LINK_LIBRARIES(clitkGammaIndex clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkGammaIndex) + + ADD_EXECUTABLE(clitkImageArithm clitkImageArithm.cxx) + TARGET_LINK_LIBRARIES(clitkImageArithm clitkImageArithmImageLib clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageArithm) + + ADD_EXECUTABLE(clitkVectorArithm clitkVectorArithm.cxx) + TARGET_LINK_LIBRARIES(clitkVectorArithm clitkVectorArithmLib clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorArithm) + + WRAP_GGO(clitkUnsharpMask_GGO_C clitkUnsharpMask.ggo) + ADD_EXECUTABLE(clitkUnsharpMask clitkUnsharpMask.cxx ${clitkUnsharpMask_GGO_C}) + TARGET_LINK_LIBRARIES(clitkUnsharpMask clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkUnsharpMask) + + WRAP_GGO(clitkFooImage_GGO_C clitkFooImage.ggo) + ADD_EXECUTABLE(clitkFooImage clitkFooImage.cxx ${clitkFooImage_GGO_C}) + TARGET_LINK_LIBRARIES(clitkFooImage clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkFooImage) + + WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo) + ADD_EXECUTABLE(clitkMedianImageFilter clitkMedianImageFilter.cxx ${clitkMedianImageFilter_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMedianImageFilter clitkMedianImageFilterLib clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianImageFilter) + + ADD_EXECUTABLE(clitkResampleImage clitkResampleImage.cxx) + TARGET_LINK_LIBRARIES(clitkResampleImage clitkResampleImageLib clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkResampleImage) + + WRAP_GGO(clitkMinMaxMask_GGO_C clitkMinMaxMask.ggo) + ADD_EXECUTABLE(clitkMinMaxMask clitkMinMaxMask.cxx ${clitkMinMaxMask_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMinMaxMask clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMinMaxMask) + + WRAP_GGO(clitkAutoCrop_GGO_C clitkAutoCrop.ggo) + ADD_EXECUTABLE(clitkAutoCrop clitkAutoCrop.cxx ${clitkAutoCrop_GGO_C}) + TARGET_LINK_LIBRARIES(clitkAutoCrop clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAutoCrop) + + WRAP_GGO(clitkDicomRTStruct2Image_GGO_C clitkDicomRTStruct2Image.ggo) + ADD_EXECUTABLE(clitkDicomRTStruct2Image clitkDicomRTStruct2Image.cxx ${clitkDicomRTStruct2Image_GGO_C}) + TARGET_LINK_LIBRARIES(clitkDicomRTStruct2Image clitkDicomRTStruct) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTStruct2Image) + + IF(CLITK_USE_SYSTEM_GDCM) + WRAP_GGO(clitkImage2DicomRTStruct_GGO_C clitkImage2DicomRTStruct.ggo) + ADD_EXECUTABLE(clitkImage2DicomRTStruct clitkImage2DicomRTStruct.cxx ${clitkImage2DicomRTStruct_GGO_C}) + TARGET_LINK_LIBRARIES(clitkImage2DicomRTStruct clitkDicomRTStruct) + ENDIF() + + WRAP_GGO(clitkComposeVF_GGO_C clitkComposeVF.ggo) + ADD_EXECUTABLE(clitkComposeVF clitkComposeVFGenericFilter.cxx clitkComposeVF.cxx ${clitkComposeVF_GGO_C}) + TARGET_LINK_LIBRARIES(clitkComposeVF clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkComposeVF) + + WRAP_GGO(clitkMergeSequence_GGO_C clitkMergeSequence.ggo) + ADD_EXECUTABLE(clitkMergeSequence clitkMergeSequence.cxx clitkMergeSequenceGenericFilter.cxx ${clitkMergeSequence_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMergeSequence clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeSequence) + + WRAP_GGO(clitkBackProjectImage_GGO_C clitkBackProjectImage.ggo) + ADD_EXECUTABLE(clitkBackProjectImage clitkBackProjectImage.cxx clitkBackProjectImageGenericFilter.cxx ${clitkBackProjectImage_GGO_C}) + TARGET_LINK_LIBRARIES(clitkBackProjectImage clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBackProjectImage) + + ADD_EXECUTABLE(clitkCropImage clitkCropImage.cxx ${clitkCropImage_GGO_C}) + TARGET_LINK_LIBRARIES(clitkCropImage clitkCropImageLib clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkCropImage) + + # WRAP_GGO(clitkExtractSlice_GGO_C clitkExtractSlice.ggo) + # ADD_EXECUTABLE(clitkExtractSlice clitkExtractSlice.cxx clitkExtractSliceGenericFilter.cxx ${clitkExtractSlice_GGO_C}) + # TARGET_LINK_LIBRARIES(clitkExtractSlice clitkCommon) + #SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkExtractSlice) + + WRAP_GGO(clitkFlipImage_GGO_C clitkFlipImage.ggo) + ADD_EXECUTABLE(clitkFlipImage clitkFlipImage.cxx clitkFlipImageGenericFilter.cxx ${clitkFlipImage_GGO_C}) + TARGET_LINK_LIBRARIES(clitkFlipImage clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkFlipImage) + + WRAP_GGO(clitkMirrorPadImage_GGO_C clitkMirrorPadImage.ggo) + ADD_EXECUTABLE(clitkMirrorPadImage clitkMirrorPadImage.cxx clitkMirrorPadImageGenericFilter.cxx ${clitkMirrorPadImage_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMirrorPadImage clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMirrorPadImage) + + WRAP_GGO(clitkImageMoment_GGO_C clitkImageMoment.ggo) + ADD_EXECUTABLE(clitkImageMoment clitkImageMoment.cxx clitkImageMomentGenericFilter.cxx ${clitkImageMoment_GGO_C}) + TARGET_LINK_LIBRARIES(clitkImageMoment clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageMoment) + + WRAP_GGO(clitkImageStatistics_GGO_C clitkImageStatistics.ggo) + ADD_EXECUTABLE(clitkImageStatistics clitkImageStatistics.cxx clitkImageStatisticsGenericFilter.cxx ${clitkImageStatistics_GGO_C}) + TARGET_LINK_LIBRARIES(clitkImageStatistics clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageStatistics) + + WRAP_GGO(clitkVFConvert_GGO_C clitkVFConvert.ggo) + ADD_EXECUTABLE(clitkVFConvert clitkVFConvert.cxx clitkVFConvertGenericFilter.cxx ${clitkVFConvert_GGO_C}) + TARGET_LINK_LIBRARIES(clitkVFConvert clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFConvert) + + WRAP_GGO(clitkImageToVectorImage_GGO_C clitkImageToVectorImage.ggo) + ADD_EXECUTABLE(clitkImageToVectorImage clitkImageToVectorImage.cxx clitkImageToVectorImageGenericFilter.cxx ${clitkImageToVectorImage_GGO_C}) + TARGET_LINK_LIBRARIES(clitkImageToVectorImage clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageToVectorImage) + + WRAP_GGO(clitkVectorImageToImage_GGO_C clitkVectorImageToImage.ggo) + ADD_EXECUTABLE(clitkVectorImageToImage clitkVectorImageToImage.cxx clitkVectorImageToImageGenericFilter.cxx ${clitkVectorImageToImage_GGO_C}) + TARGET_LINK_LIBRARIES(clitkVectorImageToImage clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorImageToImage) -SET(clitkGGO_SRC - clitkImageResample_ggo.c - # ../filters/clitkBinarizeImage_ggo.c - ) + ADD_EXECUTABLE(clitkMIP clitkMIP.cxx clitkMIPGenericFilter.cxx) + TARGET_LINK_LIBRARIES(clitkMIP clitkMIPLib clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMIP) -ADD_LIBRARY(clitkGGO STATIC ${clitkGGO_SRC}) + WRAP_GGO(clitkTransformLandmarks_GGO_C clitkTransformLandmarks.ggo) + ADD_EXECUTABLE(clitkTransformLandmarks clitkTransformLandmarks.cxx ${clitkTransformLandmarks_GGO_C}) + TARGET_LINK_LIBRARIES(clitkTransformLandmarks clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkTransformLandmarks) -ADD_EXECUTABLE(clitkDicomInfo clitkDicomInfo.cxx clitkDicomInfo_ggo.c) -TARGET_LINK_LIBRARIES(clitkDicomInfo ITKIO clitkCommon) + WRAP_GGO(clitkMaskLandmarks_GGO_C clitkMaskLandmarks.ggo) + ADD_EXECUTABLE(clitkMaskLandmarks clitkMaskLandmarks.cxx ${clitkMaskLandmarks_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMaskLandmarks clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskLandmarks) -ADD_EXECUTABLE(clitkImageInfo clitkImageInfo.cxx clitkImageInfo_ggo.c) -TARGET_LINK_LIBRARIES(clitkImageInfo ITKIO clitkCommon) + WRAP_GGO(clitkJacobianImage_GGO_C clitkJacobianImage.ggo) + ADD_EXECUTABLE(clitkJacobianImage clitkJacobianImage.cxx clitkJacobianImageGenericFilter.cxx ${clitkJacobianImage_GGO_C}) + TARGET_LINK_LIBRARIES(clitkJacobianImage clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkJacobianImage) -ADD_EXECUTABLE(clitkImageConvert clitkImageConvert.cxx clitkImageConvert_ggo.c ) -TARGET_LINK_LIBRARIES(clitkImageConvert ITKIO clitkCommon clitkFilters) + WRAP_GGO(clitkPadImage_GGO_C clitkPadImage.ggo) + ADD_EXECUTABLE(clitkPadImage clitkPadImage.cxx clitkPadImageGenericFilter.cxx ${clitkPadImage_GGO_C}) + TARGET_LINK_LIBRARIES(clitkPadImage clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPadImage) -ADD_EXECUTABLE(clitkImageResample clitkImageResample.cxx clitkImageResample_ggo.c) -TARGET_LINK_LIBRARIES(clitkImageResample ITKIO clitkCommon clitkFilters) + WRAP_GGO(clitkCatImage_GGO_C clitkCatImage.ggo) + ADD_EXECUTABLE(clitkCatImage clitkCatImage.cxx ${clitkCatImage_GGO_C}) + TARGET_LINK_LIBRARIES(clitkCatImage clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkCatImage) -ADD_EXECUTABLE(clitkVFResample clitkVFResample.cxx clitkImageResample_ggo.c) -TARGET_LINK_LIBRARIES(clitkVFResample ITKIO clitkCommon clitkFilters) + WRAP_GGO(clitkAnisotropicDiffusion_GGO_C clitkAnisotropicDiffusion.ggo) + ADD_EXECUTABLE(clitkAnisotropicDiffusion clitkAnisotropicDiffusion.cxx + clitkAnisotropicDiffusionGenericFilter.cxx + ${clitkAnisotropicDiffusion_GGO_C}) + TARGET_LINK_LIBRARIES(clitkAnisotropicDiffusion clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAnisotropicDiffusion) -ADD_EXECUTABLE(clitkImageArithm clitkImageArithm.cxx clitkImageArithm_ggo.c) -TARGET_LINK_LIBRARIES(clitkImageArithm ITKIO ITKStatistics clitkCommon clitkFilters) + WRAP_GGO(clitkChangeImageInfo_GGO_C clitkChangeImageInfo.ggo) + ADD_EXECUTABLE(clitkChangeImageInfo clitkChangeImageInfo.cxx + clitkChangeImageInfoGenericFilter.cxx + ${clitkChangeImageInfo_GGO_C}) + TARGET_LINK_LIBRARIES(clitkChangeImageInfo clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeImageInfo) -ADD_EXECUTABLE(clitkImageCreate clitkImageCreate.cxx clitkImageCreate_ggo.c) -TARGET_LINK_LIBRARIES(clitkImageCreate ITKIO ITKStatistics clitkCommon) + WRAP_GGO(clitkMergeAsciiDoseActor_GGO_C clitkMergeAsciiDoseActor.ggo) + ADD_EXECUTABLE(clitkMergeAsciiDoseActor clitkMergeAsciiDoseActor.cxx ${clitkMergeAsciiDoseActor_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMergeAsciiDoseActor ITKCommon clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeAsciiDoseActor) -ADD_EXECUTABLE(clitkImageFillRegion clitkImageFillRegion.cxx clitkImageFillRegion_ggo.c) -TARGET_LINK_LIBRARIES(clitkImageFillRegion ITKIO ITKStatistics clitkCommon -clitkFilters) + WRAP_GGO(clitkImageUncertainty_GGO_C clitkImageUncertainty.ggo) + ADD_EXECUTABLE(clitkImageUncertainty clitkImageUncertainty.cxx clitkImageUncertainty_ggo.c) + TARGET_LINK_LIBRARIES(clitkImageUncertainty clitkCommon ${ITK_LIBRARIES}) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageUncertainty) -ADD_EXECUTABLE(clitkZeroVF clitkZeroVF.cxx clitkZeroVF_ggo.c -clitkZeroVFGenericFilter.cxx) -TARGET_LINK_LIBRARIES(clitkZeroVF ITKIO ITKStatistics clitkCommon ) + WRAP_GGO(clitkImageGradientMagnitude_GGO_C clitkImageGradientMagnitude.ggo) + ADD_EXECUTABLE(clitkImageGradientMagnitude clitkImageGradientMagnitude.cxx ${clitkImageGradientMagnitude_GGO_C}) + TARGET_LINK_LIBRARIES(clitkImageGradientMagnitude clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageGradientMagnitude) -ADD_EXECUTABLE(clitkImageExtractLine clitkImageExtractLine.cxx clitkImageExtractLine_ggo.c) -TARGET_LINK_LIBRARIES(clitkImageExtractLine ITKIO ITKStatistics clitkCommon) + WRAP_GGO(clitkImageLaplacian_GGO_C clitkImageLaplacian.ggo) + ADD_EXECUTABLE(clitkImageLaplacian clitkImageLaplacian.cxx ${clitkImageLaplacian_GGO_C}) + TARGET_LINK_LIBRARIES(clitkImageLaplacian clitkCommon ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageLaplacian) -ADD_EXECUTABLE(clitkSplitImage clitkSplitImage.cxx clitkSplitImage_ggo.c - ) -TARGET_LINK_LIBRARIES(clitkSplitImage ITKBasicFilters ITKIO clitkCommon -clitkFilters) -ADD_EXECUTABLE(clitkVFMerge clitkVFMerge.cxx clitkVFMerge_ggo.c) -TARGET_LINK_LIBRARIES(clitkVFMerge ITKBasicFilters ITKIO clitkCommon ) + #========================================================= + option(CLITK_USE_ROOT "Build experimental tools using root" OFF) + if (CLITK_USE_ROOT) + FIND_PACKAGE(ROOT REQUIRED) + if(ROOT_FOUND) + MESSAGE(STATUS "ROOT found : ${ROOT_LIBRARY_DIR} ${ROOT_INCLUDE_DIR} ${ROOT_LIBRARIES}") + ELSE(ROOT_FOUND) + MESSAGE(FATAL_ERROR + "Cannot build without ROOT. Please set ROOTSYS environement variable.") + endif(ROOT_FOUND) + INCLUDE_DIRECTORIES(${ROOT_INCLUDE_DIR}) + LINK_DIRECTORIES(${ROOT_LIBRARY_DIR}) + WRAP_GGO(clitkMergeRootFiles_GGO_C clitkMergeRootFiles.ggo) + ADD_EXECUTABLE(clitkMergeRootFiles clitkMergeRootFiles.cxx GateMergeManager.cc ${clitkMergeRootFiles_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMergeRootFiles ${ROOT_LIBRARIES}) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeRootFiles) + endif() + #========================================================= -ADD_EXECUTABLE(clitkWriteDicomSeries clitkWriteDicomSeries.cxx clitkWriteDicomSeries_ggo.c) -TARGET_LINK_LIBRARIES(clitkWriteDicomSeries ITKIO clitkCommon clitkFilters) -ADD_EXECUTABLE(clitkAverageTemporalDimension clitkAverageTemporalDimension.cxx clitkAverageTemporalDimension_ggo.c) -TARGET_LINK_LIBRARIES(clitkAverageTemporalDimension ITKIO clitkCommon -clitkFilters) + #========================================================= + IF(CLITK_EXPERIMENTAL) + WRAP_GGO(clitkBinaryImageToMesh_GGO_C clitkBinaryImageToMesh.ggo) + ADD_EXECUTABLE(clitkBinaryImageToMesh clitkBinaryImageToMesh.cxx ${clitkBinaryImageToMesh_GGO_C}) + TARGET_LINK_LIBRARIES(clitkBinaryImageToMesh clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinaryImageToMesh) -ADD_EXECUTABLE(clitkWarpImage clitkWarpImage.cxx clitkWarpImage_ggo.c -clitkWarpImageGenericFilter.cxx) -TARGET_LINK_LIBRARIES(clitkWarpImage ITKBasicFilters ITKIO clitkCommon -) + WRAP_GGO(clitkMeshToBinaryImage_GGO_C clitkMeshToBinaryImage.ggo) + ADD_EXECUTABLE(clitkMeshToBinaryImage clitkMeshToBinaryImage.cxx ${clitkMeshToBinaryImage_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMeshToBinaryImage clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshToBinaryImage) -ADD_EXECUTABLE(clitkInvertVF clitkInvertVF.cxx clitkInvertVF_ggo.c) -TARGET_LINK_LIBRARIES(clitkInvertVF ITKIO clitkCommon clitkFilters) + WRAP_GGO(clitkMeshViewer_GGO_C clitkMeshViewer.ggo) + ADD_EXECUTABLE(clitkMeshViewer clitkMeshViewer.cxx ${clitkMeshViewer_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMeshViewer clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshViewer) + ENDIF(CLITK_EXPERIMENTAL) + #========================================================= -ADD_EXECUTABLE(clitkAffineTransform clitkAffineTransform.cxx clitkAffineTransform_ggo.c) -TARGET_LINK_LIBRARIES(clitkAffineTransform clitkCommon ITKIO clitkFilters) -ADD_EXECUTABLE(clitkSignalMeanPositionTracking clitkSignalMeanPositionTracking.cxx clitkSignalMeanPositionFilter.cxx clitkEllipse.cxx clitkSignalMeanPositionTracking_ggo.c) -TARGET_LINK_LIBRARIES(clitkSignalMeanPositionTracking clitkCommon ITKIO fftw3) + #========================================================= + IF(ITK_VERSION_MAJOR VERSION_LESS 4) + MESSAGE("clitkDice is not compatible with ITK<4. It will not be built.") + MESSAGE("clitkDicomRTPlan2Gate is not compatible with GDCM<2 (ITK<4). It will not be built.") + ELSE(ITK_VERSION_MAJOR VERSION_LESS 4) + WRAP_GGO(clitkDice_GGO_C clitkDice.ggo) + ADD_EXECUTABLE(clitkDice clitkDice.cxx ${clitkDice_GGO_C}) + TARGET_LINK_LIBRARIES(clitkDice clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES} ) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDice) -ADD_EXECUTABLE(clitkSignalFilter clitkSignalFilter.cxx clitkSignalFilter_ggo.c) -TARGET_LINK_LIBRARIES(clitkSignalFilter ITKIO clitkCommon fftw3) + WRAP_GGO(clitkDicomRTPlan2Gate_GGO_C clitkDicomRTPlan2Gate.ggo) + ADD_EXECUTABLE(clitkDicomRTPlan2Gate clitkDicomRTPlan2Gate.cxx clitkDicomRTPlan2Gate_ggo.c) + TARGET_LINK_LIBRARIES(clitkDicomRTPlan2Gate clitkCommon) + SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTPlan2Gate) + ENDIF(ITK_VERSION_MAJOR VERSION_LESS 4) + #========================================================= -ADD_EXECUTABLE(clitkSetBackground clitkSetBackground.cxx -clitkSetBackgroundGenericFilter.cxx clitkSetBackground_ggo.c) -TARGET_LINK_LIBRARIES(clitkSetBackground clitkCommon ITKIO ) -ADD_EXECUTABLE(clitkGuerreroVentilation clitkGuerreroVentilation.cxx - clitkGuerreroVentilation_ggo.c -) -TARGET_LINK_LIBRARIES(clitkGuerreroVentilation clitkCommon ITKIO ITKBasicFilters -clitkFilters) + INSTALL (TARGETS ${TOOLS_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE) -ADD_EXECUTABLE(clitkBinarizeImage clitkBinarizeImage.cxx) -TARGET_LINK_LIBRARIES(clitkBinarizeImage ITKIO clitkCommon) +ENDIF(CLITK_BUILD_TOOLS)