X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FclitkAffineTransform.ggo;h=1d4c43ad85a4370e7d1b9b3a24497f4f150129d5;hb=20147f097d36f54eae548368df24f577e5567677;hp=131ff8e25bd101b351ea6c49a284bbeb06ee842a;hpb=5c5fc58e0cbdcec1c9fdd19ec786912cb38d1722;p=clitk.git

diff --git a/tools/clitkAffineTransform.ggo b/tools/clitkAffineTransform.ggo
index 131ff8e..1d4c43a 100644
--- a/tools/clitkAffineTransform.ggo
+++ b/tools/clitkAffineTransform.ggo
@@ -3,32 +3,36 @@ package "clitkAffineTransform"
 version "1.0"
 purpose "Resample with or without affine transform of 2D, 3D, 4D images or vector fields"
 
-option "config"	  	-	"Config file"			  string  	no
-option "verbose"   	v   	"Verbose"			  flag		off
+option "config"	  	- "Config file"			  string  	no
+option "verbose"   	v "Verbose"			  flag		off
 
 section "I/O"
-option "input"		i	"Input image filename"		  string  	yes
-option "output"    	o   	"Output image filename"		  string 	yes
-option "like"    	l   	"Resample output this image (size, spacing,origin)"	string 	no
-option "transform_grid" -       "Apply affine transform to input grid for output's"     flag    off
+option "input"		i "Input image filename"                                          string yes
+option "output"    	o "Output image filename"                                         string yes
+option "like"    	l "Resample output this image (size, spacing, origin, direction)" string no
+option "transform_grid" - "Apply affine transform to input grid for output's"             flag   off
 
 section "Options"
-option "size"		-	"New output size if different from input"  	int 	no 	multiple
-option "spacing"	-	"New output spacing if different from input" 	double 	no 	multiple
-option "origin"		-	"New output origin if different from input" 	double 	no 	multiple
-option "matrix"		m	"Affine matrix (homogene) filename"		string  no
-option "rotate"		r	"Rotation to apply (radians)"	                double	no	multiple
-option "translate"	t	"Translation to apply (mm)"		        double  no	multiple
-option "pad"		-	"Edge padding value" 				double 	no 	default="0.0"
+option "size"		- "New output size if different from input"  	int 	no 	multiple
+option "spacing"	- "New output spacing if different from input" 	double 	no 	multiple
+option "spacinglike"	- "New output spacing like this image" 	        string  no
+option "origin"		- "New output origin if different from input" 	double 	no 	multiple
+option "direction"	- "New output direction if different from input" double no 	multiple
+option "matrix"		m "Affine matrix (homogene) filename"		string  no
+option "elastix"	e "Read EulerTransform from elastix output file (combine if multiple)"	string  no
+option "rotate"		r "Rotation to apply (radians)"	                double	no	multiple
+option "translate"	t "Translation to apply (mm)"		        double  no	multiple
+option "pad"		- "Edge padding value" 				double 	no 	default="0.0"
+option "adaptive"		- "Adapt the size, spacing or the origin when one of the previous tag is on (use previous clitkResampleImage)" flag off
 
 section "Interpolation"
-option "interp"		-	"Interpolation: 0=NN, 1=Linear, 2=BSpline, 3=BLUT"	int  	no  default="1"
-option "interpOrder"	-	"Order if BLUT or BSpline (0-5)"		        int  	no  default="3"
-option "interpSF"	-	"Sampling factor if BLUT"			        int  	no  default="20"
-option "interpVF"	-	"Interpolation: 0=NN, 1=Linear, 2=BSpline, 3=BLUT"	int  	no  default="1"
-option "interpVFOrder"	-	"Order if BLUT or BSpline (0-5)"		        int  	no  default="3"
-option "interpVFSF"	-	"Sampling factor if BLUT"			        int  	no  default="20"
-
-
-
-
+option "interp"		- "Interpolation: 0=NN, 1=Linear, 2=BSpline, 3=BLUT"	int  	no  default="1"
+option "interpOrder"	- "Order if BLUT or BSpline (0-5)"		        int  	no  default="3"
+option "interpSF"	- "Sampling factor if BLUT"			        int  	no  default="20"
+option "interpVF"	- "Interpolation: 0=NN, 1=Linear, 2=BSpline, 3=BLUT"	int  	no  default="1"
+option "interpVFOrder"	- "Order if BLUT or BSpline (0-5)"		        int  	no  default="3"
+option "interpVFSF"	- "Sampling factor if BLUT"			        int  	no  default="20"
+
+section "Gaussian filtering"
+option "gauss" g "Apply gaussian filter before (sigma in mm) (default=0.0)" double no multiple
+option "autogauss" - "Apply gaussian filter before with auto sigma when downsampling (default=off)" flag off
\ No newline at end of file