X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FclitkAffineTransformGenericFilter.txx;h=65d66dc741c6256637eefbeb5c222a25860caf87;hb=2873923458309014563d46763e0155c08e3985c1;hp=150c8c172187c9455af05d8a7861e05d34c46855;hpb=a93208c4ebf1cb3c89a8c8d0c022d17cc66a6f8e;p=clitk.git

diff --git a/tools/clitkAffineTransformGenericFilter.txx b/tools/clitkAffineTransformGenericFilter.txx
index 150c8c1..65d66dc 100644
--- a/tools/clitkAffineTransformGenericFilter.txx
+++ b/tools/clitkAffineTransformGenericFilter.txx
@@ -182,9 +182,8 @@ namespace clitk
           }
         else {
           if (m_ArgsInfo.elastix_given) {
-            std::vector<std::string> s;
-            for(uint i=0; i<m_ArgsInfo.elastix_given; i++) s.push_back(m_ArgsInfo.elastix_arg[i]);
-            matrix = createMatrixFromElastixFile<Dimension>(s, m_Verbose);
+            std::string filename(m_ArgsInfo.elastix_arg);
+            matrix = createMatrixFromElastixFile<Dimension>(filename, m_Verbose);
           }
           else 
             matrix.SetIdentity();
@@ -213,6 +212,7 @@ namespace clitk
       likeReader->SetFileName(m_ArgsInfo.like_arg);
       likeReader->Update();
       resampler->SetOutputParametersFromImage(likeReader->GetOutput());
+      resampler->SetOutputDirection(likeReader->GetOutput()->GetDirection());
     } else if(m_ArgsInfo.transform_grid_flag) {
       typename itk::Matrix<double, Dimension+1, Dimension+1> invMatrix( matrix.GetInverse() );
       typename itk::Matrix<double, Dimension, Dimension> invRotMatrix( clitk::GetRotationalPartMatrix(invMatrix) );