X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FclitkAffineTransformGenericFilter.txx;h=93d43571b11d170825ad6f31e09b5646e653f086;hb=182d324aaea3d92e8b676d8a6e609ba8fab44726;hp=150c8c172187c9455af05d8a7861e05d34c46855;hpb=97a3a9ed3f33ab0316bd4613c8aae404de40dad1;p=clitk.git

diff --git a/tools/clitkAffineTransformGenericFilter.txx b/tools/clitkAffineTransformGenericFilter.txx
index 150c8c1..93d4357 100644
--- a/tools/clitkAffineTransformGenericFilter.txx
+++ b/tools/clitkAffineTransformGenericFilter.txx
@@ -139,7 +139,7 @@ namespace clitk
       {
         if (m_ArgsInfo.matrix_given)
           {
-            std::cerr << "You must use either rotate/translate or matrix options" << std::cout;
+            std::cerr << "You must use either rotate/translate or matrix options" << std::endl;
             return;
           }
         itk::Array<double> transformParameters(2 * Dimension);
@@ -182,9 +182,8 @@ namespace clitk
           }
         else {
           if (m_ArgsInfo.elastix_given) {
-            std::vector<std::string> s;
-            for(uint i=0; i<m_ArgsInfo.elastix_given; i++) s.push_back(m_ArgsInfo.elastix_arg[i]);
-            matrix = createMatrixFromElastixFile<Dimension>(s, m_Verbose);
+            std::string filename(m_ArgsInfo.elastix_arg);
+            matrix = createMatrixFromElastixFile<Dimension>(filename, m_Verbose);
           }
           else 
             matrix.SetIdentity();
@@ -213,6 +212,7 @@ namespace clitk
       likeReader->SetFileName(m_ArgsInfo.like_arg);
       likeReader->Update();
       resampler->SetOutputParametersFromImage(likeReader->GetOutput());
+      resampler->SetOutputDirection(likeReader->GetOutput()->GetDirection());
     } else if(m_ArgsInfo.transform_grid_flag) {
       typename itk::Matrix<double, Dimension+1, Dimension+1> invMatrix( matrix.GetInverse() );
       typename itk::Matrix<double, Dimension, Dimension> invRotMatrix( clitk::GetRotationalPartMatrix(invMatrix) );
@@ -369,7 +369,7 @@ namespace clitk
       {
         if (m_ArgsInfo.matrix_given)
           {
-            std::cerr << "You must use either rotate/translate or matrix options" << std::cout;
+            std::cerr << "You must use either rotate/translate or matrix options" << std::endl;
             return;
           }
         itk::Array<double> transformParameters(2 * Dimension);