X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FclitkDicomRTStruct2Image.ggo;h=980f8a92bcba6322586a158c0f4a8da3d5d695cc;hb=33c594d9f55d2b377223fc989727d42114170c77;hp=d403f069524b7b112ceb67d19bb7b3eaad718f0a;hpb=2300716104b55267692efc2c0e506b3c5c45df38;p=clitk.git

diff --git a/tools/clitkDicomRTStruct2Image.ggo b/tools/clitkDicomRTStruct2Image.ggo
index d403f06..980f8a9 100644
--- a/tools/clitkDicomRTStruct2Image.ggo
+++ b/tools/clitkDicomRTStruct2Image.ggo
@@ -7,11 +7,17 @@ option "verbose"         v "Verbose"			     flag	off
 option "verboseFile"     - "Verbose file content"            flag	off
 option "input"		 i "Input Dicom file"		     string	yes
 option "image"		 j "Used to read image info (spacing, origin)"    string	yes
-option "roi"		 r "ROI to binarize (if -1 = all roi)"	          int    no default="-1"
-option "output"		 o "Output image filename"	 string	yes
+option "output"		 o "Output image base filename (roi number and extension will be append)"	 string	yes
+
+defgroup "ROIoption" groupdesc="an option of this group is required" 
+groupoption "roi"     r "ROI to binarize (if -1 = all roi)"            int    no default="-1" group="ROIoption"
+groupoption "roiName"     n "ROI name to binarize (be wary of spaces in ROI names; if blank, use given 'roi' value)"            string    no default="" group="ROIoption"
+groupoption "roiNameSubstr"     s "Substring of ROI name to binarize (reuturns all matches; if blank, use given 'roiName' value)"            string    no default="" group="ROIoption"
 
 option "crop"		 c "Crop binary mask"	         flag off
 
+option "mha"  - "Write the RTStruct as a mha image to avoid special character problems"	         flag off
+
 #option "roi"		 r "ROI to print (ID)"		 int		no
 #option "contour"	 c "contour to print (ID)"	 int            no
 #option "offset"		 o "to display points as image offsets" flag	off