X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FclitkImageStatistics.ggo;h=60d451a7648d2029f89b9ec8b93e381355183561;hb=f48c960aef6e0a5a4edea516b062197db009e25f;hp=863dfbd2319364036fa1e30fe9e337f441eab8bf;hpb=01efc03d2d7e88c82197f8f500239573c8b67c39;p=clitk.git

diff --git a/tools/clitkImageStatistics.ggo b/tools/clitkImageStatistics.ggo
index 863dfbd..60d451a 100644
--- a/tools/clitkImageStatistics.ggo
+++ b/tools/clitkImageStatistics.ggo
@@ -1,15 +1,21 @@
 #File clitkImageStatistics.ggo
 package "clitkImageStatistics"
-version "1.0"
-purpose "Compute statistics on an image, or on part of an image specified by a mask and label(s)"
+version "2.0"
+#This tool supports multiple images on the input, or even 4D, but all images must be of the same type and dimensions. 
+purpose "Compute statistics on an image, or on part of an image specified by a mask and label(s). The tool also supports multichannel images, which is useful, e.g., for vector fields. All channels are processed (separately) by default, but only one channel may be chosen."
 
-option "config"	  	-	"Config file"			  string  	no
-option "verbose"   	v   	"Verbose"			  flag		off
+option "config"       - "Config file"                                                         string  no
+option "verbose"      v "Verbose"                                                             flag    off
 
-option "input"		i	"Input image filename"		  string  	yes
-option "mask"		m	"Mask image filename (uchar)"		  string  	no
-option "label"		l	"Label(s) in the mask image to consider"	int  	no 	multiple 	default="1"
-option "histogram"	-	"Compute histogram, allows median calculation"	string  no
-option "bins"		-	"Number of histogram bins"	  		int  	no 	default="100"
-option "lower"		-	"Lower histogram bound"	double 	no default="-1000"	
-option "upper"		-	"Upper histogram bound"	double 	no default="1000"		
+option "input"        i "Input image filename"                                                string  no  multiple
+option "channel"      c "Image channel to be used in statistics (-1 to process all channels)" int     no  default="-1"
+option "mask"         m "Mask image filename (uchar)"                                         string  no
+option "label"        l "Label(s) in the mask image to consider"                              int     no  multiple 	default="1"
+option "localize"     - "With verbose, write the index coordinates of the max and min"        flag    off
+option "histogram"    - "Compute histogram, allows median calculation"                        string  no
+option "dvhistogram"  - "Compute dose volume histogram"                                       string  no
+option "bins"         - "Number of histogram bins"                                            int     no  default="100"
+option "lower"        - "Lower histogram bound"                                               double  no  default="-1000"
+option "upper"        - "Upper histogram bound"                                               double  no  default="1000"
+
+option "allow_resize" r "Resize mask if different from input"                                 flag    off