X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FclitkImageStatisticsGenericFilter.cxx;h=ddfe5e0293661220055a8aabd95259273d759403;hb=744196f3cdd679570572bc69c67c258b973eca58;hp=3779698ea7c7f82ef29223f03e82be0a2737ab77;hpb=a26cd8a19e1b9ad8344ab501436045f171a73713;p=clitk.git

diff --git a/tools/clitkImageStatisticsGenericFilter.cxx b/tools/clitkImageStatisticsGenericFilter.cxx
old mode 100755
new mode 100644
index 3779698..ddfe5e0
--- a/tools/clitkImageStatisticsGenericFilter.cxx
+++ b/tools/clitkImageStatisticsGenericFilter.cxx
@@ -3,7 +3,7 @@
 
   Authors belong to: 
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,7 +14,7 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
 #ifndef clitkImageStatisticsGenericFilter_cxx
 #define clitkImageStatisticsGenericFilter_cxx
 
@@ -50,20 +50,79 @@ namespace clitk
   void ImageStatisticsGenericFilter::Update()
   {
     // Read the Dimension and PixelType
-    int Dimension;
+    int Dimension, Components;
     std::string PixelType;
-    ReadImageDimensionAndPixelType(m_InputFileName, Dimension, PixelType);
+    ReadImageDimensionAndPixelType(m_InputFileName, Dimension, PixelType, Components);
+    
+    if (m_ArgsInfo.channel_arg < -1 || m_ArgsInfo.channel_arg >= Components) {
+      std::cout << "Invalid image channel" << std::endl;
+      return;
+    }
+    
+    if (m_ArgsInfo.mask_given) {
+      int maskDimension, maskComponents;
+      std::string maskPixelType;
+      ReadImageDimensionAndPixelType(m_ArgsInfo.mask_arg, maskDimension, maskPixelType, maskComponents);
+      if (!(maskDimension == Dimension || maskDimension == (Dimension - 1))) {
+        std::cout << "Dimension of label mask must be equal to the (d)imension of the input image or d-1." << std::endl;
+        return;
+      }
+    }
 
     
     // Call UpdateWithDim
-    if(Dimension==2) UpdateWithDim<2>(PixelType);
-    else if(Dimension==3) UpdateWithDim<3>(PixelType);
-    // else if (Dimension==4)UpdateWithDim<4>(PixelType); 
-    else 
-      {
-	std::cout<<"Error, Only for 2 or 3  Dimensions!!!"<<std::endl ;
-	return;
+    if (Dimension==2) {
+      switch (Components) {
+        case 1: 
+          UpdateWithDim<2,1>(PixelType);
+          break;
+        case 2: 
+          UpdateWithDim<2,2>(PixelType);
+          break;
+        case 3: 
+          UpdateWithDim<2,3>(PixelType);
+          break;
+        default:
+          std::cout << "Unsupported number of channels" << std::endl;
+          break;
+      }
+    }
+    else if (Dimension==3) {
+      switch (Components) {
+        case 1: 
+          UpdateWithDim<3,1>(PixelType);
+          break;
+        case 2: 
+          UpdateWithDim<3,2>(PixelType);
+          break;
+        case 3: 
+          UpdateWithDim<3,3>(PixelType);
+          break;
+        default:
+          std::cout << "Unsupported number of channels" << std::endl;
+          break;
+      }
+    }
+    else if (Dimension==4) {
+      switch (Components) {
+        case 1: 
+          UpdateWithDim<4,1>(PixelType);
+          break;
+        case 2: 
+          UpdateWithDim<4,2>(PixelType);
+          break;
+        case 3: 
+          UpdateWithDim<4,3>(PixelType);
+          break;
+        default:
+          std::cout << "Unsupported number of channels" << std::endl;
+          break;
       }
+    }
+    else {
+      std::cout<<"Error, Only for 2 or 3  Dimensions!!!"<<std::endl ;
+      return;
+    }
   }