X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FclitkSetBackgroundGenericFilter.txx;h=63ccfb026a9d75ade4c9b978990a54b13c445d3b;hb=3988b16bc288e330d6ac2cf2206ef8bbc2921ca5;hp=16cdfa52d0a734dafb00ee78f9e522e545e256e3;hpb=931a42358442f4ee4f314613c991c838d4b4e3b7;p=clitk.git

diff --git a/tools/clitkSetBackgroundGenericFilter.txx b/tools/clitkSetBackgroundGenericFilter.txx
index 16cdfa5..63ccfb0 100644
--- a/tools/clitkSetBackgroundGenericFilter.txx
+++ b/tools/clitkSetBackgroundGenericFilter.txx
@@ -1,98 +1,104 @@
-#ifndef clitkSetBackgroundGenericFilter_txx
-#define clitkSetBackgroundGenericFilter_txx
+/*=========================================================================
+  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
+
+  Authors belong to:
+  - University of LYON              http://www.universite-lyon.fr/
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
+  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
-/* =================================================
- * @file   clitkSetBackgroundGenericFilter.txx
- * @author 
- * @date   
- * 
- * @brief 
- * 
- ===================================================*/
+  This software is distributed WITHOUT ANY WARRANTY; without even
+  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+  PURPOSE.  See the copyright notices for more information.
 
+  It is distributed under dual licence
+
+  - BSD        See included LICENSE.txt file
+  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+===========================================================================**/
+#ifndef clitkSetBackgroundGenericFilter_txx
+#define clitkSetBackgroundGenericFilter_txx
 
 namespace clitk
 {
 
-  //-------------------------------------------------------------------
-  // Update with the number of dimensions
-  //-------------------------------------------------------------------
-  template<unsigned int Dimension>
-  void 
-  SetBackgroundGenericFilter::UpdateWithDim(std::string PixelType)
-  {
-    if (m_Verbose) std::cout << "Image was detected to be "<<Dimension<<"D and "<< PixelType<<"..."<<std::endl;
-
-    if(PixelType == "short"){  
-      if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed short..." << std::endl;
-      UpdateWithDimAndPixelType<Dimension, signed short>(); 
-    }
-    //    else if(PixelType == "unsigned_short"){  
-    //       if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and unsigned_short..." << std::endl;
-    //       UpdateWithDimAndPixelType<Dimension, unsigned short>(); 
-    //     }
-    
-    else if (PixelType == "unsigned_char"){ 
-      if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and unsigned_char..." << std::endl;
-      UpdateWithDimAndPixelType<Dimension, unsigned char>();
-    }
-    
-    //     else if (PixelType == "char"){ 
-    //       if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and signed_char..." << std::endl;
-    //       UpdateWithDimAndPixelType<Dimension, signed char>();
-    //     }
-    else {
-      if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and float..." << std::endl;
-      UpdateWithDimAndPixelType<Dimension, float>();
-    }
+//-------------------------------------------------------------------
+// Update with the number of dimensions
+//-------------------------------------------------------------------
+template<unsigned int Dimension>
+void
+SetBackgroundGenericFilter::UpdateWithDim(std::string PixelType)
+{
+  if (m_Verbose) std::cout << "Image was detected to be "<<Dimension<<"D and "<< PixelType<<"..."<<std::endl;
+
+  if(PixelType == "short") {
+    if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed short..." << std::endl;
+    UpdateWithDimAndPixelType<Dimension, signed short>();
+  }
+  //    else if(PixelType == "unsigned_short"){
+  //       if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and unsigned_short..." << std::endl;
+  //       UpdateWithDimAndPixelType<Dimension, unsigned short>();
+  //     }
+
+  else if (PixelType == "unsigned_char") {
+    if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and unsigned_char..." << std::endl;
+    UpdateWithDimAndPixelType<Dimension, unsigned char>();
   }
 
+  //     else if (PixelType == "char"){
+  //       if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and signed_char..." << std::endl;
+  //       UpdateWithDimAndPixelType<Dimension, signed char>();
+  //     }
+  else {
+    if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and float..." << std::endl;
+    UpdateWithDimAndPixelType<Dimension, float>();
+  }
+}
 
-  //-------------------------------------------------------------------
-  // Update with the number of dimensions and the pixeltype
-  //-------------------------------------------------------------------
-  template <unsigned int Dimension, class  PixelType> 
-  void 
-  SetBackgroundGenericFilter::UpdateWithDimAndPixelType()
-  {
+//-------------------------------------------------------------------
+// Update with the number of dimensions and the pixeltype
+//-------------------------------------------------------------------
+template <unsigned int Dimension, class  PixelType>
+void
+SetBackgroundGenericFilter::UpdateWithDimAndPixelType()
+{
 
   // ImageTypes
-    typedef itk::Image<PixelType, Dimension> InputImageType;
-    typedef itk::Image<float, Dimension> MaskImageType;
-    
-    // Read the input
-    typedef itk::ImageFileReader<InputImageType> InputReaderType;
-    typename InputReaderType::Pointer reader = InputReaderType::New();
-    reader->SetFileName( m_InputFileName);
-    typename InputImageType::Pointer input= reader->GetOutput();
-
-    // Read the mask
-    typedef itk::ImageFileReader<MaskImageType> MaskReaderType;
-    typename MaskReaderType::Pointer maskReader = MaskReaderType::New();
-    maskReader->SetFileName( m_ArgsInfo.mask_arg);
-    typename MaskImageType::Pointer mask= maskReader->GetOutput();
-
-    // Filter setting background
-    typedef clitk::SetBackgroundImageFilter<InputImageType,MaskImageType, InputImageType> SetBackgroundFilterType; 
-    typename SetBackgroundFilterType::Pointer setBackgroundFilter = SetBackgroundFilterType::New(); 
-    setBackgroundFilter->SetInput(input);
-    setBackgroundFilter->SetInput2(mask);
-    if(m_ArgsInfo.fg_flag)  setBackgroundFilter->SetForeground(m_ArgsInfo.fg_flag);
-    if(m_ArgsInfo.maskValue_given)  setBackgroundFilter->SetMaskValue(m_ArgsInfo.maskValue_arg);
-    if(m_ArgsInfo.outsideValue_given)  setBackgroundFilter->SetOutsideValue(m_ArgsInfo.outsideValue_arg);
-    setBackgroundFilter->Update();
-    typename InputImageType::Pointer output =setBackgroundFilter->GetOutput();
-          
-    // Output
-    typedef itk::ImageFileWriter<InputImageType> WriterType;
-    typename WriterType::Pointer writer = WriterType::New();
-    writer->SetFileName(m_ArgsInfo.output_arg);
-    writer->SetInput(output);
-    writer->Update();
+  typedef itk::Image<PixelType, Dimension> InputImageType;
+  typedef itk::Image<unsigned char, Dimension> MaskImageType;
 
-  }
+  // Read the input
+  typedef itk::ImageFileReader<InputImageType> InputReaderType;
+  typename InputReaderType::Pointer reader = InputReaderType::New();
+  reader->SetFileName( m_InputFileName);
+  typename InputImageType::Pointer input= reader->GetOutput();
+
+  // Read the mask
+  typedef itk::ImageFileReader<MaskImageType> MaskReaderType;
+  typename MaskReaderType::Pointer maskReader = MaskReaderType::New();
+  maskReader->SetFileName( m_ArgsInfo.mask_arg);
+  typename MaskImageType::Pointer mask= maskReader->GetOutput();
+
+  // Filter setting background
+  typedef clitk::SetBackgroundImageFilter<InputImageType,MaskImageType, InputImageType> SetBackgroundFilterType;
+  typename SetBackgroundFilterType::Pointer setBackgroundFilter = SetBackgroundFilterType::New();
+  setBackgroundFilter->SetInput(input);
+  setBackgroundFilter->SetInput2(mask);
+  if(m_ArgsInfo.fg_flag)  setBackgroundFilter->SetForeground(m_ArgsInfo.fg_flag);
+  if(m_ArgsInfo.maskValue_given)  setBackgroundFilter->SetMaskValue(m_ArgsInfo.maskValue_arg);
+  if(m_ArgsInfo.outsideValue_given)  setBackgroundFilter->SetOutsideValue(m_ArgsInfo.outsideValue_arg);
+  setBackgroundFilter->Update();
+  typename InputImageType::Pointer output =setBackgroundFilter->GetOutput();
+
+  // Output
+  typedef itk::ImageFileWriter<InputImageType> WriterType;
+  typename WriterType::Pointer writer = WriterType::New();
+  writer->SetFileName(m_ArgsInfo.output_arg);
+  writer->SetInput(output);
+  writer->Update();
+
+}
 
 
 }//end clitk
- 
+
 #endif //#define clitkSetBackgroundGenericFilter_txx