X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FclitkValuesToBSplineCoefficientsGenericFilter.txx;fp=tools%2FclitkValuesToBSplineCoefficientsGenericFilter.txx;h=782aad88e702058bc95025da3a0feea54ad92bd1;hb=a26cd8a19e1b9ad8344ab501436045f171a73713;hp=0000000000000000000000000000000000000000;hpb=f1016340d797dbe6e0672e6e06a583baaafc738b;p=clitk.git

diff --git a/tools/clitkValuesToBSplineCoefficientsGenericFilter.txx b/tools/clitkValuesToBSplineCoefficientsGenericFilter.txx
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+++ b/tools/clitkValuesToBSplineCoefficientsGenericFilter.txx
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+/*=========================================================================
+  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
+
+  Authors belong to: 
+  - University of LYON              http://www.universite-lyon.fr/
+  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
+
+  This software is distributed WITHOUT ANY WARRANTY; without even
+  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+  PURPOSE.  See the copyright notices for more information.
+
+  It is distributed under dual licence
+
+  - BSD        See included LICENSE.txt file
+  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+======================================================================-====*/
+#ifndef clitkValuesToBSplineCoefficientsGenericFilter_txx
+#define clitkValuesToBSplineCoefficientsGenericFilter_txx
+
+/* =================================================
+ * @file   clitkValuesToBSplineCoefficientsGenericFilter.txx
+ * @author 
+ * @date   
+ * 
+ * @brief 
+ * 
+ ===================================================*/
+
+
+namespace clitk
+{
+
+  //-------------------------------------------------------------------
+  // Update with the number of dimensions
+  //-------------------------------------------------------------------
+  template<unsigned int Dimension>
+  void 
+  ValuesToBSplineCoefficientsGenericFilter::UpdateWithDim(std::string PixelType, unsigned int Components)
+  {
+    if (m_Verbose) std::cout << "Image was detected to be "<<Dimension<<"D and "<<Components<<" component(s) of "<<  PixelType<<"..."<<std::endl;
+
+    if (Components==1)
+      {
+	if(PixelType == "short"){  
+	  if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed short..." << std::endl;
+	  UpdateWithDimAndPixelType<Dimension, signed short>(); 
+	}
+	//    else if(PixelType == "unsigned_short"){  
+	//       if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and unsigned_short..." << std::endl;
+	//       UpdateWithDimAndPixelType<Dimension, unsigned short>(); 
+	//     }
+	
+	else if (PixelType == "unsigned_char"){ 
+	  if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and unsigned_char..." << std::endl;
+	  UpdateWithDimAndPixelType<Dimension, unsigned char>();
+	}
+	
+	//     else if (PixelType == "char"){ 
+	//       if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and signed_char..." << std::endl;
+	//       UpdateWithDimAndPixelType<Dimension, signed char>();
+	//     }
+	else {
+	  if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and float..." << std::endl;
+	  UpdateWithDimAndPixelType<Dimension, float>();
+	}
+      }
+    
+    else if (Components==3)
+      {
+	if (m_Verbose) std::cout  << "Launching filter in "<< Dimension <<"D and 3D float (DVF)" << std::endl;
+	UpdateWithDimAndVectorType<Dimension, itk::Vector<float, 3> >();
+      }
+
+    else std::cerr<<"Number of components is "<<Components<<", not supported!"<<std::endl;
+  }
+
+
+  //-------------------------------------------------------------------
+  // Update with the number of dimensions and the pixeltype
+  //-------------------------------------------------------------------
+  template <unsigned int Dimension, class  PixelType> 
+  void 
+  ValuesToBSplineCoefficientsGenericFilter::UpdateWithDimAndPixelType()
+  {
+
+    // ImageTypes
+    typedef itk::Image<PixelType, Dimension> InputImageType;
+    typedef itk::Image<PixelType, Dimension> OutputImageType;
+    
+    // Read the input
+    typedef itk::ImageFileReader<InputImageType> InputReaderType;
+    typename InputReaderType::Pointer reader = InputReaderType::New();
+    reader->SetFileName( m_InputFileName);
+    reader->Update();
+    typename InputImageType::Pointer input= reader->GetOutput();
+
+    // Filter
+    typedef itk::BSplineDecompositionImageFilter<InputImageType, OutputImageType> FilterType;
+    typename FilterType::Pointer filter=FilterType::New();
+    filter->SetInput(input);
+    filter->SetSplineOrder(m_ArgsInfo.order_arg);
+    filter->Update();
+    typename OutputImageType::Pointer output=filter->GetOutput();
+        
+    // Output
+    typedef itk::ImageFileWriter<OutputImageType> WriterType;
+    typename WriterType::Pointer writer = WriterType::New();
+    writer->SetFileName(m_ArgsInfo.output_arg);
+    writer->SetInput(output);
+    writer->Update();
+
+  }
+
+
+  //-------------------------------------------------------------------
+  // Update with the number of dimensions and the Vectortype
+  //-------------------------------------------------------------------
+  template <unsigned int Dimension, class  PixelType> 
+  void 
+  ValuesToBSplineCoefficientsGenericFilter::UpdateWithDimAndVectorType()
+  {
+
+    // ImageTypes
+    typedef itk::Image<PixelType, Dimension> InputImageType;
+    typedef itk::Image<PixelType, Dimension> OutputImageType;
+    
+    // Read the input
+    typedef itk::ImageFileReader<InputImageType> InputReaderType;
+    typename InputReaderType::Pointer reader = InputReaderType::New();
+    reader->SetFileName( m_InputFileName);
+    reader->Update();
+    typename InputImageType::Pointer input= reader->GetOutput();
+
+    // Filter
+    typedef clitk::VectorBSplineDecompositionImageFilter<InputImageType, OutputImageType> FilterType;
+    typename FilterType::Pointer filter=FilterType::New();
+    filter->SetInput(input);
+    filter->SetSplineOrder(m_ArgsInfo.order_arg);
+    filter->Update();
+    typename OutputImageType::Pointer output=filter->GetOutput();
+        
+    // Output
+    typedef itk::ImageFileWriter<OutputImageType> WriterType;
+    typename WriterType::Pointer writer = WriterType::New();
+    writer->SetFileName(m_ArgsInfo.output_arg);
+    writer->SetInput(output);
+    writer->Update();
+
+  }
+
+
+}//end clitk
+ 
+#endif //#define clitkValuesToBSplineCoefficientsGenericFilter_txx