X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=tools%2FclitkWriteDicomSeriesGenericFilter.txx;h=a2bccc4aa0daa52fbef3b8a34cb115b3eb9cc20c;hb=1512c37902327dde2650268e1fbd7fbc085b7a89;hp=480e4969847db27b312e63f59f5b6214ed184fbb;hpb=300af893aa6a88e8576cf5f246ee74a207b156b9;p=clitk.git

diff --git a/tools/clitkWriteDicomSeriesGenericFilter.txx b/tools/clitkWriteDicomSeriesGenericFilter.txx
index 480e496..a2bccc4 100644
--- a/tools/clitkWriteDicomSeriesGenericFilter.txx
+++ b/tools/clitkWriteDicomSeriesGenericFilter.txx
@@ -139,7 +139,7 @@ WriteDicomSeriesGenericFilter<args_info_type>::UpdateWithDimAndPixelType()
   namesGenerator->SetInputDirectory( m_ArgsInfo.inputDir_arg );
   namesGenerator->SetOutputDirectory( m_ArgsInfo.outputDir_arg  );
   typename   ReaderType::FileNamesContainer filenames_in = namesGenerator->GetInputFileNames();
-  typename   ReaderType::FileNamesContainer filenames_out;
+  typename   ReaderType::FileNamesContainer filenames_out = namesGenerator->GetOutputFileNames();
 
   // Output the dicom files
   unsigned int numberOfFilenames =  filenames_in.size();
@@ -153,6 +153,12 @@ WriteDicomSeriesGenericFilter<args_info_type>::UpdateWithDimAndPixelType()
 
   // Read the series
   typename ReaderType::Pointer reader = ReaderType::New();
+  if (m_ArgsInfo.preserve_flag) {
+#if GDCM_MAJOR_VERSION >= 2
+    gdcmIO->LoadPrivateTagsOn();
+    gdcmIO->KeepOriginalUIDOn();
+#endif
+  }
   reader->SetImageIO( gdcmIO );
   reader->SetFileNames( filenames_in );
   try {
@@ -314,7 +320,6 @@ WriteDicomSeriesGenericFilter<args_info_type>::UpdateWithDimAndPixelType()
     gdcmIO->SetKeepOriginalUID(true);
 #endif
     namesGenerator->SetOutputDirectory( m_ArgsInfo.outputDir_arg  );
-    filenames_out = namesGenerator->GetOutputFileNames();
   }
   
   filenames_out.resize(numberOfFilenames);
@@ -378,6 +383,9 @@ WriteDicomSeriesGenericFilter<args_info_type>::UpdateWithDimAndPixelType()
     // file UIDs are recreated for new studies or series
     if (!useInputFileUID)
     {
+      if (m_ArgsInfo.verbose_flag)
+        std::cout << "Recreating file UIDs" << std::endl;
+
       std::string fileUID;
 #if GDCM_MAJOR_VERSION >= 2
       gdcm::UIDGenerator fid;
@@ -405,6 +413,8 @@ WriteDicomSeriesGenericFilter<args_info_type>::UpdateWithDimAndPixelType()
 
   // Write
   try {
+    if (m_ArgsInfo.verbose_flag)
+      std::cout << seriesWriter << std::endl;
     seriesWriter->Update();
   } catch( itk::ExceptionObject & excp ) {
     std::cerr << "Error: Exception thrown while writing the series!!" << std::endl;