X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=vv%2FvvBinaryImageOverlayActor.cxx;h=1c18def90c2216c5b2d24c7ef3a0834e2f917513;hb=05306a598620f8eecd320abc606d1cff4b96f333;hp=0405cdb2fda4c4b49968ee2cbd71b6972c242f3d;hpb=1e034c70105f0926939acaaa27ddb46e904ae8bf;p=clitk.git diff --git a/vv/vvBinaryImageOverlayActor.cxx b/vv/vvBinaryImageOverlayActor.cxx index 0405cdb..1c18def 100644 --- a/vv/vvBinaryImageOverlayActor.cxx +++ b/vv/vvBinaryImageOverlayActor.cxx @@ -3,7 +3,7 @@ Authors belong to: - University of LYON http://www.universite-lyon.fr/ - - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr + - Léon Bérard cancer center http://www.centreleonberard.fr - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr This software is distributed WITHOUT ANY WARRANTY; without even @@ -14,10 +14,13 @@ - BSD See included LICENSE.txt file - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html - ======================================================================-====*/ + ===========================================================================**/ #include "vvBinaryImageOverlayActor.h" #include "vvImage.h" +#include +#include +#include #include #include #include @@ -28,36 +31,55 @@ #include #include #include +#include //------------------------------------------------------------------------------ vvBinaryImageOverlayActor::vvBinaryImageOverlayActor() -{ +{ mTSlice = -1; mSlice = 0; mColor.resize(3); mAlpha = 0.6; mImage = 0; mSlicer = 0; - mColorLUT = vtkLookupTable::New(); + mColorLUT = vtkSmartPointer::New(); + mForegroundValue = 1; + mBackgroundValue = 0; + m_modeBG = true; + mDepth = 1.0; } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ vvBinaryImageOverlayActor::~vvBinaryImageOverlayActor() -{ - for (unsigned int i = 0; i < mSlicer->GetImage()->GetVTKImages().size(); i++) { - mSlicer->GetRenderer()->RemoveActor(mImageActorList[i]); - } +{ mImageActorList.clear(); - mMapperList.clear(); +} +//------------------------------------------------------------------------------ + + +//------------------------------------------------------------------------------ +void vvBinaryImageOverlayActor::RemoveActors() +{ + for (unsigned int i = 0; i < mImageActorList.size(); i++) { + if (mSlicer != 0) { + if (mSlicer != NULL) { + if (mSlicer->GetRenderer() != 0) { + if (mImageActorList[i] != 0) { + mSlicer->GetRenderer()->RemoveActor(mImageActorList[i]); + } + } + } + } + } } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ void vvBinaryImageOverlayActor::SetColor(double r, double g, double b) -{ +{ mColor[0] = r; mColor[1] = g; mColor[2] = b; @@ -67,15 +89,15 @@ void vvBinaryImageOverlayActor::SetColor(double r, double g, double b) //------------------------------------------------------------------------------ void vvBinaryImageOverlayActor::SetSlicer(vvSlicer * slicer) -{ +{ mSlicer = slicer; } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvBinaryImageOverlayActor::Initialize() -{ +void vvBinaryImageOverlayActor::Initialize(bool IsVisible) +{ if (!mSlicer) { std::cerr << "ERROR. Please use setSlicer before setSlicer in vvBinaryImageOverlayActor." << std::endl; exit(0); @@ -88,23 +110,95 @@ void vvBinaryImageOverlayActor::Initialize() // Create an actor for each time slice for (unsigned int numImage = 0; numImage < mSlicer->GetImage()->GetVTKImages().size(); numImage++) { // how many intensity ? - vtkImageMapToRGBA * mOverlayMapper = vtkImageMapToRGBA::New(); - mOverlayMapper->SetInput(mImage->GetVTKImages()[0]); // DS TODO : to change if it is 4D !!! - mColorLUT->SetRange(0,1); - mColorLUT->SetNumberOfTableValues(2); - mColorLUT->SetTableValue(mBackgroundValue, 0, 0, 0, 0.0); // BG - mColorLUT->SetTableValue(1, mColor[0], mColor[1], mColor[2], mAlpha); // FG + + + + if (!mFusionReslice) { + mFusionReslice = vtkSmartPointer::New(); + mFusionReslice->SetInterpolationModeToLinear(); + mFusionReslice->AutoCropOutputOn(); + mFusionReslice->SetBackgroundColor(-1000,-1000,-1000,1); + } + + mConcatenatedFusionTransform = vtkSmartPointer::New(); + mConcatenatedFusionTransform->Identity(); + if (!mImage->GetTransform().empty()){ + mConcatenatedFusionTransform->Concatenate(mImage->GetTransform()[0]); + } + mConcatenatedFusionTransform->Concatenate(mSlicer->GetSlicingTransform()); + mFusionReslice->SetResliceAxes(mConcatenatedFusionTransform->GetMatrix()); + if (mImage->IsTimeSequence()) { +#if VTK_MAJOR_VERSION <= 5 + mFusionReslice->SetInput(0, mImage->GetVTKImages()[numImage]); + mFusionReslice->UpdateInformation(); +#else + mFusionReslice->SetInputData(0, mImage->GetVTKImages()[numImage]); +#endif + } else { +#if VTK_MAJOR_VERSION <= 5 + mFusionReslice->SetInput(0, mImage->GetVTKImages()[0]); + mFusionReslice->UpdateInformation(); +#else + mFusionReslice->SetInputData(0, mImage->GetVTKImages()[0]); +#endif + } + mFusionReslice->Update(); + + + + vtkSmartPointer mOverlayMapper = vtkSmartPointer::New(); +#if VTK_MAJOR_VERSION <= 5 + mOverlayMapper->SetInput(mFusionReslice->GetOutput()); +#else + mOverlayMapper->SetInputConnection(mFusionReslice->GetOutputPort(0)); +#endif + + double range[2]; + if (mImage->IsTimeSequence()) + { + mImage->GetVTKImages()[numImage]->GetScalarRange(range); + } + else { + mImage->GetVTKImages()[0]->GetScalarRange(range); + } + int n = range[1]-range[0]+1; + mColorLUT->SetRange(range[0],range[1]); + mColorLUT->SetNumberOfTableValues(n); + + // Mode BG -> all is color except BG + if (m_modeBG) { + for(int i=0; iSetTableValue(i, mColor[0], mColor[1], mColor[2], mAlpha); + } + mColorLUT->SetTableValue(mBackgroundValue, 0, 0, 0, 0.0); + } + else { + // Mode FG -> all is BG, except FG which is color + for(int i=0; iSetTableValue(i, 0, 0, 0, 0.0); + } + mColorLUT->SetTableValue(mForegroundValue, mColor[0], mColor[1], mColor[2], mAlpha); + } + mOverlayMapper->SetLookupTable(mColorLUT); - vtkImageActor * mOverlayActor = vtkImageActor::New(); + vtkSmartPointer mOverlayActor = vtkSmartPointer::New(); +#if VTK_MAJOR_VERSION <= 5 mOverlayActor->SetInput(mOverlayMapper->GetOutput()); +#else + mOverlayActor->GetMapper()->SetInputConnection(mOverlayMapper->GetOutputPort()); +#endif mOverlayActor->SetPickable(0); - mOverlayActor->SetVisibility(true); - //mOverlayActor->SetOpacity(1.0); + mOverlayActor->SetVisibility(IsVisible); + //mOverlayActor->SetOpacity(1.0); + + // FIXME : by default overlay is not interpolated. + // mOverlayActor->SetInterpolate(mSlicer->GetImageActor()->GetInterpolate()); + mOverlayActor->InterpolateOff(); mMapperList.push_back(mOverlayMapper); mImageActorList.push_back(mOverlayActor); - mSlicer->GetRenderer()->AddActor(mOverlayActor); + mSlicer->GetRenderer()->AddActor(mImageActorList[numImage]); } } //------------------------------------------------------------------------------ @@ -112,7 +206,7 @@ void vvBinaryImageOverlayActor::Initialize() //------------------------------------------------------------------------------ void vvBinaryImageOverlayActor::SetOpacity(double d) -{ +{ mAlpha = d; } //------------------------------------------------------------------------------ @@ -153,45 +247,52 @@ void vvBinaryImageOverlayActor::SetOpacity(double d) //------------------------------------------------------------------------------ -void vvBinaryImageOverlayActor::SetImage(vvImage::Pointer image, double bg) -{ +void vvBinaryImageOverlayActor::SetImage(vvImage::Pointer image, double bg, bool modeBG) +{ mImage = image; - mBackgroundValue = bg; + if (modeBG) { + mBackgroundValue = bg; + m_modeBG = true; + } + else { + mForegroundValue = bg; + m_modeBG = false; + } } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ void vvBinaryImageOverlayActor::HideActors() -{ +{ if (!mSlicer) return; mSlice = mSlicer->GetSlice(); for(unsigned int i=0; iVisibilityOff(); } - mSlicer->Render(); + // Caller MUST call Render + // mSlicer->Render(); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ void vvBinaryImageOverlayActor::ShowActors() -{ +{ if (!mSlicer) return; mSlice = mSlicer->GetSlice(); mTSlice = mSlicer->GetTSlice(); - // for(unsigned int i=0; iVisibilityOn(); UpdateSlice(0, mSlice); - //} - mSlicer->Render(); + // Caller MUST call Render + //mSlicer->Render(); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ void vvBinaryImageOverlayActor::UpdateColor() -{ +{ mColorLUT->SetTableValue(1, mColor[0], mColor[1], mColor[2], mAlpha); // FG for (unsigned int numImage = 0; numImage < mSlicer->GetImage()->GetVTKImages().size(); numImage++) { // how many intensity ? @@ -199,20 +300,25 @@ void vvBinaryImageOverlayActor::UpdateColor() mOverlayMapper->SetLookupTable(mColorLUT); vtkImageActor * mOverlayActor = mImageActorList[numImage]; +#if VTK_MAJOR_VERSION <= 5 mOverlayActor->SetInput(mOverlayMapper->GetOutput()); +#else + mOverlayActor->SetInputData(mOverlayMapper->GetOutput()); +#endif } } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvBinaryImageOverlayActor::UpdateSlice(int slicer, int slice) -{ +void vvBinaryImageOverlayActor::UpdateSlice(int slicer, int slice, bool force) +{ if (!mSlicer) return; - if (mPreviousSlice == mSlicer->GetSlice()) { - if (mPreviousTSlice == mSlicer->GetTSlice()) { - //DD("=========== NOTHING"); - return; // Nothing to do + if (!force) { + if (mPreviousSlice == mSlicer->GetSlice()) { + if (mPreviousTSlice == mSlicer->GetTSlice()) { + return; // Nothing to do + } } } @@ -225,14 +331,15 @@ void vvBinaryImageOverlayActor::UpdateSlice(int slicer, int slice) int orientation = mSlicer->GetOrientation(); int maskExtent[6]; ComputeExtent(orientation, mSlice, imageExtent, maskExtent); - //ComputeExtent(imageExtent, maskExtent, mSlicer->GetImage()->GetFirstVTKImageData(), mImage->GetFirstVTKImageData()); - ComputeExtent(maskExtent, maskExtent, mSlicer->GetImage()->GetFirstVTKImageData(), mImage->GetFirstVTKImageData()); - // std::cout << "maskExtent = " << maskExtent[0] << " " << maskExtent[1] << " " << maskExtent[2] << " " - // << maskExtent[3] << " " << maskExtent[4] << " " << maskExtent[5] << std::endl; + ComputeExtent(maskExtent, maskExtent, mSlicer->GetImage()->GetVTKImages()[mTSlice], mImage->GetVTKImages()[mTSlice]); +#if VTK_MAJOR_VERSION <= 5 mSlicer->ClipDisplayedExtent(maskExtent, mMapperList[mTSlice]->GetInput()->GetWholeExtent()); - // std::cout << "maskExtent = " << maskExtent[0] << " " << maskExtent[1] << " " << maskExtent[2] << " " - // << maskExtent[3] << " " << maskExtent[4] << " " << maskExtent[5] << std::endl; - SetDisplayExtentAndCameraPosition(orientation, mSlice, maskExtent, mImageActorList[mTSlice], 0.0); +#else + mSlicer->ClipDisplayedExtent(maskExtent, mMapperList[mTSlice]->GetInput()->GetInformation()->Get(vtkDataObject::DATA_EXTENT())); +#endif + HideActors(); + mImageActorList[mTSlice]->VisibilityOn(); + SetDisplayExtentAndCameraPosition(orientation, mSlice, maskExtent, mImageActorList[mTSlice], mDepth); // set previous slice mPreviousTSlice = mSlicer->GetTSlice(); @@ -243,13 +350,10 @@ void vvBinaryImageOverlayActor::UpdateSlice(int slicer, int slice) //------------------------------------------------------------------------------ void vvBinaryImageOverlayActor::ComputeExtent(int orientation, - int slice, - int * inExtent, - int * outExtent) -{ - // std::cout << "InExtent = " << inExtent[0] << " " << inExtent[1] << " " << inExtent[2] << " " - // << inExtent[3] << " " << inExtent[4] << " " << inExtent[5] << std::endl; - // DD(orientation); + int slice, + int * inExtent, + int * outExtent) +{ switch (orientation) { case vtkImageViewer2::SLICE_ORIENTATION_XY: for(int i=0; i<4; i++) outExtent[i] = inExtent[i]; @@ -265,63 +369,65 @@ void vvBinaryImageOverlayActor::ComputeExtent(int orientation, outExtent[0] = outExtent[1] = slice; break; } - // std::cout << "OutExtent = " << outExtent[0] << " " << outExtent[1] << " " << outExtent[2] << " " - // << outExtent[3] << " " << outExtent[4] << " " << outExtent[5] << std::endl; } //------------------------------------------------------------------------------ //---------------------------------------------------------------------------- void vvBinaryImageOverlayActor::ComputeExtent(int * inExtent, int * outExtent, vtkImageData * image, vtkImageData * overlay) -{ - outExtent[0] = (( image->GetOrigin()[0] + inExtent[0]*image->GetSpacing()[0] ) - overlay->GetOrigin()[0]) / - overlay->GetSpacing()[0]; - outExtent[1] = (( image->GetOrigin()[0] + inExtent[1]*image->GetSpacing()[0] ) - overlay->GetOrigin()[0]) / - overlay->GetSpacing()[0]; - outExtent[2] = (( image->GetOrigin()[1] + inExtent[2]*image->GetSpacing()[1] ) - overlay->GetOrigin()[1]) / - overlay->GetSpacing()[1]; - outExtent[3] = (( image->GetOrigin()[1] + inExtent[3]*image->GetSpacing()[1] ) - overlay->GetOrigin()[1]) / - overlay->GetSpacing()[1]; - outExtent[4] = (( image->GetOrigin()[2] + inExtent[4]*image->GetSpacing()[2] ) - overlay->GetOrigin()[2]) / - overlay->GetSpacing()[2]; - outExtent[5] = (( image->GetOrigin()[2] + inExtent[5]*image->GetSpacing()[2] ) - overlay->GetOrigin()[2]) / - overlay->GetSpacing()[2]; +{ + for(int i=0; i<3; i++) { + double a = (image->GetOrigin()[i] + inExtent[i*2]*image->GetSpacing()[i] - + overlay->GetOrigin()[i]) / overlay->GetSpacing()[i]; + double b = (image->GetOrigin()[i] + inExtent[i*2+1]*image->GetSpacing()[i] - + overlay->GetOrigin()[i]) / overlay->GetSpacing()[i]; + outExtent[i*2] = lrint(a); + outExtent[i*2+1] = lrint(b); + } + + /* // FIXME (original) + outExtent[0] = (int)lrint(((image->GetOrigin()[0] + inExtent[0]*image->GetSpacing()[0]) - overlay->GetOrigin()[0]) / overlay->GetSpacing()[0]); + outExtent[1] = (int)lrint(((image->GetOrigin()[0] + inExtent[1]*image->GetSpacing()[0]) - overlay->GetOrigin()[0]) / overlay->GetSpacing()[0]); + outExtent[2] = (int)lrint(((image->GetOrigin()[1] + inExtent[2]*image->GetSpacing()[1]) - overlay->GetOrigin()[1]) / overlay->GetSpacing()[1]); + outExtent[3] = (int)lrint(((image->GetOrigin()[1] + inExtent[3]*image->GetSpacing()[1]) - overlay->GetOrigin()[1]) / overlay->GetSpacing()[1]); + outExtent[4] = (int)lrint(((image->GetOrigin()[2] + inExtent[4]*image->GetSpacing()[2]) - overlay->GetOrigin()[2]) / overlay->GetSpacing()[2]); + outExtent[5] = (int)lrint(((image->GetOrigin()[2] + inExtent[5]*image->GetSpacing()[2]) - overlay->GetOrigin()[2]) / overlay->GetSpacing()[2]); + */ } //---------------------------------------------------------------------------- //------------------------------------------------------------------------------ void vvBinaryImageOverlayActor::SetDisplayExtentAndCameraPosition(int orientation, - int slice, - int * extent, - vtkImageActor * actor, - double position) -{ - actor->SetDisplayExtent(extent); + int slice, + int * extent, + vtkImageActor * actor, + double position) +{ + /* FIXME + Error according to camera orientation + */ // Set position if (orientation == vtkImageViewer2::SLICE_ORIENTATION_XY) { - if (mSlicer->GetRenderer()->GetActiveCamera()->GetPosition()[2] > slice) - actor->SetPosition(0,0, position); - else + //if (mSlicer->GetRenderer()->GetActiveCamera()->GetPosition()[2] > slice) actor->SetPosition(0,0, -position); + //else + //actor->SetPosition(0,0, position); } if (orientation == vtkImageViewer2::SLICE_ORIENTATION_XZ) { - if (mSlicer->GetRenderer()->GetActiveCamera()->GetPosition()[1] > slice) - actor->SetPosition(0,position,0); - else + //if (mSlicer->GetRenderer()->GetActiveCamera()->GetPosition()[1] > slice) + // actor->SetPosition(0,position,0); + //else actor->SetPosition(0,-position,0); } if (orientation == vtkImageViewer2::SLICE_ORIENTATION_YZ) { - if (mSlicer->GetRenderer()->GetActiveCamera()->GetPosition()[0] > slice) - actor->SetPosition(position,0, 0); - else + //if (mSlicer->GetRenderer()->GetActiveCamera()->GetPosition()[0] > slice) + // actor->SetPosition(position,0, 0); + //else actor->SetPosition(-position,0, 0); } - + actor->SetDisplayExtent(extent); } //------------------------------------------------------------------------------ - - -