X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=vv%2FvvMainWindow.cxx;h=456e9bda79a93f4687ad29f0958d5e7a61466c4e;hb=77ed5552a569a557a4ebbda7477a8f452f7b1dcf;hp=1948e791eed57439f08e4d428ea467281e01dcf1;hpb=44afe6c93f185da1ac0debc227105bf56404482e;p=clitk.git diff --git a/vv/vvMainWindow.cxx b/vv/vvMainWindow.cxx index 1948e79..456e9bd 100644 --- a/vv/vvMainWindow.cxx +++ b/vv/vvMainWindow.cxx @@ -44,6 +44,7 @@ #include "vvStructSelector.h" #include "vvMeshReader.h" #include "vvConstants.h" +#include "clitkConfiguration.h" // ITK include #include "itkImage.h" @@ -79,7 +80,7 @@ #define COLUMN_RELOAD_IMAGE 6 #define COLUMN_IMAGE_NAME 7 -#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr)" +#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr *.SCAN )" /*Data Tree values 0,Qt::UserRole full filename @@ -98,6 +99,7 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() mInputPathName = ""; mMenuTools = menuTools; + // mMenuSegmentation = menuSegmentation; mContextMenu = &contextMenu; mMenuExperimentalTools = menuExperimental; mMainWidget = this; @@ -131,18 +133,6 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() contextMenu.addSeparator(); - // QAction* actionCrop_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/crop.png")), - // tr("Crop Current Image")); - // connect(actionCrop_image,SIGNAL(triggered()),this,SLOT(CropImage())); - // contextActions.push_back(actionCrop_image); - - QAction* actionSplit_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/cut.png")), - tr("Split Current Image")); - connect(actionSplit_image,SIGNAL(triggered()),this,SLOT(SplitImage())); - contextActions.push_back(actionSplit_image); - - contextMenu.addSeparator(); - contextMenu.addAction(actionAdd_VF_to_current_Image); contextActions.push_back(actionAdd_VF_to_current_Image); @@ -154,7 +144,7 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage())); contextMenu.addAction(actionAdd_fusion_image); - connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(AddFusionImage())); + connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage())); contextActions.push_back(actionAdd_fusion_image); // TRIAL DS @@ -244,6 +234,7 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour())); connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour())); connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages())); + connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages())); connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime())); connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime())); connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs())); @@ -277,6 +268,7 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap())); connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel())); connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel())); + connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages())); connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint))); @@ -311,6 +303,7 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() QMenu * rmenu = new QMenu("Recently opened files..."); rmenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png"))); menuFile->insertMenu(actionOpen_Image_With_Time,rmenu); + menuFile->insertSeparator(actionOpen_Image_With_Time); for (std::list::iterator i = recent_files.begin(); i!=recent_files.end(); i++) { QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), (*i).c_str(),this); @@ -440,7 +433,7 @@ void vvMainWindow::OpenVTKContour() void vvMainWindow::OpenDCStructContour() { if (mSlicerManagers.size() > 0) { - QString Extensions = "Dicom Files ( *.dcm; RS*)"; + QString Extensions = "Dicom Files ( *.dcm RS*)"; Extensions += ";;All Files (*)"; QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions); if (file.isNull()) @@ -604,6 +597,22 @@ void vvMainWindow::MergeImages() } //------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ +void vvMainWindow::SliceImages() +{ + QString Extensions = EXTENSIONS; + Extensions += ";;All Files (*)"; + + QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions); + if (files.isEmpty()) + return; + mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str(); + std::vector vector; + for (int i = 0; i < files.size(); i++) + vector.push_back(files[i].toStdString()); + LoadImages(vector, SLICED); +} +//------------------------------------------------------------------------------ //------------------------------------------------------------------------------ void vvMainWindow::MergeImagesWithTime() @@ -739,6 +748,32 @@ void vvMainWindow::LoadImages(std::vector files, LoadedImageType fi else fileSize = 1; + // For SLICED, we need the number of slices (ndim and #slices) + std::vector nSlices; + nSlices.resize(files.size()); + std::fill(nSlices.begin(), nSlices.end(), 1); + if (filetype == SLICED) { + for (int i = 0; i < fileSize; i++) { + itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]); + QApplication::setOverrideCursor(QCursor(Qt::WaitCursor)); + if (!header) { + nSlices[i] = 0; + QString error = "Cannot open file \n"; + error += files[i].c_str(); + QMessageBox::information(this,tr("Reading problem"),error); + return; + } + if (header->GetNumberOfDimensions() < 3) { + nSlices[i] = 0; + QString error = "Dimension problem. Cannot slice \n"; + error += files[i].c_str(); + QMessageBox::information(this,tr("Reading problem"),error); + return; + } + nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 ); + } + } + //Only add to the list of recently opened files when a single file is opened, //to avoid polluting the list of recently opened files if (files.size() == 1) { @@ -754,108 +789,100 @@ void vvMainWindow::LoadImages(std::vector files, LoadedImageType fi //open images as 1 or multiples for (int i = 0; i < fileSize; i++) { - progress.Update("Opening " + files[i]); + progress.SetText("Opening " + files[i]); progress.SetProgress(i,fileSize); qApp->processEvents(); - //read the image and put it in mSlicerManagers - vvSlicerManager* imageManager = new vvSlicerManager(4); - qApp->processEvents(); + for (unsigned int j = 0; j < nSlices[i]; j++) { + //read the image and put it in mSlicerManagers + vvSlicerManager* imageManager = new vvSlicerManager(4); + qApp->processEvents(); - bool SetImageSucceed=false; - - // Change filename if an image with the same already exist - // DD(files[i]); - int number=0; - for(unsigned int l=0; lGetBaseFileName()); - // DD(v->GetFileName()); - if (v->GetBaseFileName() == - vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(files[i]))) { - number = std::max(number, v->GetBaseFileNameNumber()+1); + bool SetImageSucceed=false; + + // Change filename if an image with the same already exist + int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice")); + + if (filetype == IMAGE || filetype == IMAGEWITHTIME || filetype == SLICED) + SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j); + else { + SetImageSucceed = imageManager->SetImages(files,filetype, number); } - } + if (SetImageSucceed == false) { + QApplication::restoreOverrideCursor(); + QString error = "Cannot open file \n"; + error += imageManager->GetLastError().c_str(); + QMessageBox::information(this,tr("Reading problem"),error); + delete imageManager; + } else { + mSlicerManagers.push_back(imageManager); + //create an item in the tree with good settings + QTreeWidgetItem *item = new QTreeWidgetItem(); + item->setData(0,Qt::UserRole,files[i].c_str()); + QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path + item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName()); + item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath()); + qApp->processEvents(); - if (filetype == IMAGE || filetype == IMAGEWITHTIME) - SetImageSucceed = imageManager->SetImage(files[i],filetype, number); - else { - SetImageSucceed = imageManager->SetImages(files,filetype, number); - } - if (SetImageSucceed == false) { - QApplication::restoreOverrideCursor(); - QString error = "Cannot open file \n"; - error += imageManager->GetLastError().c_str(); - QMessageBox::information(this,tr("Reading problem"),error); - delete imageManager; - } else { - mSlicerManagers.push_back(imageManager); + //Create the buttons for reload and close + qApp->processEvents(); + QTreePushButton* cButton = new QTreePushButton; + cButton->setItem(item); + cButton->setColumn(COLUMN_CLOSE_IMAGE); + cButton->setToolTip(tr("close image")); + cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png"))); + connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), + this,SLOT(CloseImage(QTreeWidgetItem*, int))); - //create an item in the tree with good settings - QTreeWidgetItem *item = new QTreeWidgetItem(); - item->setData(0,Qt::UserRole,files[i].c_str()); - QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path - item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName()); - qApp->processEvents(); + QTreePushButton* rButton = new QTreePushButton; + rButton->setItem(item); + rButton->setColumn(COLUMN_RELOAD_IMAGE); + rButton->setToolTip(tr("reload image")); + rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png"))); + connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), + this,SLOT(ReloadImage(QTreeWidgetItem*, int))); - //Create the buttons for reload and close - qApp->processEvents(); - QTreePushButton* cButton = new QTreePushButton; - cButton->setItem(item); - cButton->setColumn(COLUMN_CLOSE_IMAGE); - cButton->setToolTip(tr("close image")); - cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png"))); - connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), - this,SLOT(CloseImage(QTreeWidgetItem*, int))); + DataTree->addTopLevelItem(item); + DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton); + DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton); - QTreePushButton* rButton = new QTreePushButton; - rButton->setItem(item); - rButton->setColumn(COLUMN_RELOAD_IMAGE); - rButton->setToolTip(tr("reload image")); - rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png"))); - connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), - this,SLOT(ReloadImage(QTreeWidgetItem*, int))); + //set the id of the image + QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1); + item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str()); + mSlicerManagers.back()->SetId(id.toStdString()); - DataTree->addTopLevelItem(item); - DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton); - DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton); + linkPanel->addImage(imageManager->GetFileName(), id.toStdString()); - //set the id of the image - QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1); - item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str()); - mSlicerManagers.back()->SetId(id.toStdString()); - - linkPanel->addImage(imageManager->GetFileName(), id.toStdString()); - - connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)), - this,SLOT(CurrentImageChanged(std::string))); - connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)), - this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double))); - connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)), - this, SLOT(VectorChanged(int,double,double,double, double))); - connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)), - this, SLOT(OverlayChanged(int,double,double))); - connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)), - this, SLOT(FusionChanged(int,double))); - connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)), - this,SLOT(WindowsChanged(int, int, int))); - connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)), - this,SLOT(WindowLevelChanged(double, double, int, int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)), - this,SLOT(UpdateSlice(int,int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)), - this,SLOT(UpdateTSlice(int, int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)), - this,SLOT(UpdateSliceRange(int,int,int,int,int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)), - this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)), - this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*))); - connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)), - this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int))); - connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint())); - InitSlicers(); + connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)), + this,SLOT(CurrentImageChanged(std::string))); + connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)), + this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double))); + connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)), + this, SLOT(VectorChanged(int,double,double,double, double))); + connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)), + this, SLOT(OverlayChanged(int,double,double))); + connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)), + this, SLOT(FusionChanged(int,double))); + connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)), + this,SLOT(WindowsChanged(int, int, int))); + connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)), + this,SLOT(WindowLevelChanged(double, double, int, int))); + connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)), + this,SLOT(UpdateSlice(int,int))); + connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)), + this,SLOT(UpdateTSlice(int, int))); + connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)), + this,SLOT(UpdateSliceRange(int,int,int,int,int))); + connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)), + this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int))); + connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)), + this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*))); + connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)), + this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int))); + connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint())); + InitSlicers(); + } numberofsuccesulreads++; } } @@ -925,8 +952,8 @@ void vvMainWindow::CurrentImageChanged(std::string id) //------------------------------------------------------------------------------ void vvMainWindow::ImageInfoChanged() { - contextActions[7]->setEnabled(1); contextActions[6]->setEnabled(1); + contextActions[5]->setEnabled(1); actionSave_As->setEnabled(1); actionAdd_VF_to_current_Image->setEnabled(1); actionAdd_fusion_image->setEnabled(1); @@ -1502,136 +1529,6 @@ void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column) } //------------------------------------------------------------------------------ -// void vvMainWindow::CropImage() -// { -// int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]); -// vvCropDialog crop(mSlicerManagers,index); -// if(crop.exec()) -// AddImage(crop.GetOutput(),"cropped.mhd"); -// } - -//------------------------------------------------------------------------------ -void vvMainWindow::SplitImage() -{ - int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]); - int dim = mSlicerManagers[index]->GetDimension(); - QString warning = "Do you really want to split the "; - warning += QString::number(dim) + "D image "; - warning += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString() + " into "; - warning += QString::number(mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1]) + " "; - warning += QString::number(dim-1) + "D images."; - QMessageBox msgBox(QMessageBox::Warning, tr("Split Image"), - warning, 0, this); - msgBox.addButton(tr("Split"), QMessageBox::AcceptRole); - msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole); - if (msgBox.exec() == QMessageBox::AcceptRole) { - QApplication::setOverrideCursor(QCursor(Qt::WaitCursor)); - if (dim > 2) { - std::string filename = DataTree->selectedItems()[0]->data(0,Qt::UserRole).toString().toStdString(); - int numberOfSlice = mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1]; - std::string path = itksys::SystemTools::GetFilenamePath( - filename); - path += "/"; - path += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString().toStdString(); - path += "%03d"; - path += itksys::SystemTools::GetFilenameLastExtension( - filename).c_str(); - - typedef itk::NumericSeriesFileNames NameGeneratorType; - NameGeneratorType::Pointer nameGenerator = NameGeneratorType::New(); - nameGenerator->SetSeriesFormat(path.c_str()); - nameGenerator->SetStartIndex(0); - nameGenerator->SetEndIndex(numberOfSlice-1); - nameGenerator->SetIncrementIndex(1); - - for (int i = 0; i < numberOfSlice; i++) { - vvSlicerManager* imageManager = new vvSlicerManager(4); - imageManager->SetExtractedImage(nameGenerator->GetFileNames()[i], - mSlicerManagers[index]->GetSlicer(0)->GetImage(), i); - mSlicerManagers.push_back(imageManager); - - //create an item in the tree with good settings - QTreeWidgetItem *item = new QTreeWidgetItem(); - item->setData(0,Qt::UserRole,nameGenerator->GetFileNames()[i].c_str()); - std::string fileI = itksys::SystemTools::GetFilenameWithoutLastExtension( - nameGenerator->GetFileNames()[i]).c_str(); - item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileI.c_str()); - for (int j = 1; j <= 4; j++) { - for (int i = 0; i < DataTree->topLevelItemCount(); i++) { - DataTree->topLevelItem(i)->setData(j,Qt::CheckStateRole,0); - } - item->setData(j,Qt::CheckStateRole,2); - } - - //Create the buttons for reload and close - QTreePushButton* cButton = new QTreePushButton; - cButton->setItem(item); - cButton->setColumn(COLUMN_CLOSE_IMAGE); - cButton->setToolTip(tr("close image")); - cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png"))); - connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), - this,SLOT(CloseImage(QTreeWidgetItem*, int))); - - QTreePushButton* rButton = new QTreePushButton; - rButton->setItem(item); - rButton->setColumn(COLUMN_RELOAD_IMAGE); - rButton->setToolTip(tr("reload image")); - rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png"))); - rButton->setEnabled(false); - connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), - this,SLOT(ReloadImage(QTreeWidgetItem*, int))); - - DataTree->addTopLevelItem(item); - DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton); - DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton); - - //set the id of the image - QString id = nameGenerator->GetFileNames()[i].c_str() + QString::number(mSlicerManagers.size()-1); - item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str()); - mSlicerManagers.back()->SetId(id.toStdString()); - linkPanel->addImage(fileI, id.toStdString()); - connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)), - this,SLOT(CurrentImageChanged(std::string))); - connect(mSlicerManagers.back(),SIGNAL( - UpdatePosition(int, double, double, double, double, double, double, double)),this, - SLOT(MousePositionChanged(int,double, double, double, double, double, double, double))); - connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)), - this, SLOT(VectorChanged(int,double,double,double, double))); - connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)), - this, SLOT(OverlayChanged(int,double,double))); - connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)), - this, SLOT(FusionChanged(int,double))); - connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)), - this,SLOT(WindowsChanged(int, int, int))); - connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)), - this,SLOT(WindowLevelChanged(double, double, int, int))); - connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)), - this,SLOT(UpdateSlice(int,int))); - connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)), - this,SLOT(UpdateTSlice(int, int))); - connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)), - this,SLOT(UpdateSliceRange(int,int,int,int,int))); - connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)), - this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)), - this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*))); - connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint())); - UpdateTree(); - qApp->processEvents(); - InitSlicers(); - InitDisplay(); - qApp->processEvents(); - } - QApplication::restoreOverrideCursor(); - } else { - QApplication::restoreOverrideCursor(); - QString error = "Cannot split file (dimensions must be greater than 2) "; - QMessageBox::information(this,tr("Splitting problem"),error); - } - } -} -//------------------------------------------------------------------------------ - //------------------------------------------------------------------------------ void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value) { @@ -1720,6 +1617,20 @@ void vvMainWindow::SwitchWindowLevel() } //------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ +void vvMainWindow::ApplyWindowLevelToAllImages() +{ + for (unsigned int i = 0; i < mSlicerManagers.size(); i++) { + if (mSlicerManagers[i] == NULL) + continue; + mSlicerManagers[i]->SetColorWindow(windowSpinBox->value()); + mSlicerManagers[i]->SetColorLevel(levelSpinBox->value()); + mSlicerManagers[i]->SetPreset(6); + mSlicerManagers[i]->Render(); + } +} +//------------------------------------------------------------------------------ + //------------------------------------------------------------------------------ void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps) { @@ -1755,7 +1666,6 @@ void vvMainWindow::ShowContextMenu(QPoint point) contextActions[4]->setEnabled(0); contextActions[5]->setEnabled(0); contextActions[6]->setEnabled(0); - contextActions[7]->setEnabled(0); } else { int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]); contextActions[1]->setEnabled(1); @@ -1765,7 +1675,6 @@ void vvMainWindow::ShowContextMenu(QPoint point) contextActions[3]->setEnabled(1); contextActions[5]->setEnabled(1); contextActions[6]->setEnabled(1); - contextActions[7]->setEnabled(1); if (mSlicerManagers[index]->GetDimension() < 3) contextActions[4]->setEnabled(0); @@ -1834,7 +1743,9 @@ void vvMainWindow::AddOverlayImage(int index, QString file) QTreeWidgetItem *item = new QTreeWidgetItem(); item->setData(0,Qt::UserRole,file.toStdString().c_str()); item->setData(1,Qt::UserRole,tr("overlay")); - item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str()); + QFileInfo fileinfo(file); //Do not show the path + item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName()); + item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath()); qApp->processEvents(); for (int j = 1; j <= 4; j++) { @@ -1912,7 +1823,7 @@ void vvMainWindow::AddROI(int index, QString file) //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvMainWindow::AddFusionImage() +void vvMainWindow::SelectFusionImage() { int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]); @@ -1929,74 +1840,82 @@ void vvMainWindow::AddFusionImage() QString Extensions = EXTENSIONS; Extensions += ";;All Files (*)"; QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions); - if (!file.isEmpty()) { - mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str(); - itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO( - file.toStdString().c_str(), itk::ImageIOFactory::ReadMode); - reader->SetFileName(file.toStdString().c_str()); - reader->ReadImageInformation(); - std::string component = reader->GetComponentTypeAsString(reader->GetComponentType()); - if (reader) { - QApplication::setOverrideCursor(QCursor(Qt::WaitCursor)); - vvProgressDialog progress("Opening fusion"); - qApp->processEvents(); + if (!file.isEmpty()) + AddFusionImage(index,file); +} +//------------------------------------------------------------------------------ - std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str(); - if (mSlicerManagers[index]->SetFusion(file.toStdString(), - reader->GetNumberOfDimensions(), component)) { - //create an item in the tree with good settings - QTreeWidgetItem *item = new QTreeWidgetItem(); - item->setData(0,Qt::UserRole,file.toStdString().c_str()); - item->setData(1,Qt::UserRole,tr("fusion")); - item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str()); - qApp->processEvents(); +//------------------------------------------------------------------------------ +void vvMainWindow::AddFusionImage(int index, QString file) +{ + mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str(); + itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO( + file.toStdString().c_str(), itk::ImageIOFactory::ReadMode); + reader->SetFileName(file.toStdString().c_str()); + reader->ReadImageInformation(); + std::string component = reader->GetComponentTypeAsString(reader->GetComponentType()); + if (reader) { + QApplication::setOverrideCursor(QCursor(Qt::WaitCursor)); + vvProgressDialog progress("Opening fusion"); + qApp->processEvents(); - for (int j = 1; j <= 4; j++) { - item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole)); - mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0, - DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt()); - } + std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str(); + if (mSlicerManagers[index]->SetFusion(file.toStdString(), + reader->GetNumberOfDimensions(), component)) { + //create an item in the tree with good settings + QTreeWidgetItem *item = new QTreeWidgetItem(); + item->setData(0,Qt::UserRole,file.toStdString().c_str()); + item->setData(1,Qt::UserRole,tr("fusion")); + QFileInfo fileinfo(filename.c_str()); //Do not show the path + item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName()); + item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath()); + qApp->processEvents(); - //Create the buttons for reload and close - qApp->processEvents(); - QTreePushButton* cButton = new QTreePushButton; - cButton->setItem(item); - cButton->setColumn(COLUMN_CLOSE_IMAGE); - cButton->setToolTip(tr("close image")); - cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png"))); - connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), - this,SLOT(CloseImage(QTreeWidgetItem*, int))); + for (int j = 1; j <= 4; j++) { + item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole)); + mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0, + DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt()); + } - QTreePushButton* rButton = new QTreePushButton; - rButton->setItem(item); - rButton->setColumn(COLUMN_RELOAD_IMAGE); - rButton->setToolTip(tr("reload image")); - rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png"))); - connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), - this,SLOT(ReloadImage(QTreeWidgetItem*, int))); + //Create the buttons for reload and close + qApp->processEvents(); + QTreePushButton* cButton = new QTreePushButton; + cButton->setItem(item); + cButton->setColumn(COLUMN_CLOSE_IMAGE); + cButton->setToolTip(tr("close image")); + cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png"))); + connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), + this,SLOT(CloseImage(QTreeWidgetItem*, int))); - DataTree->topLevelItem(index)->setExpanded(1); - DataTree->topLevelItem(index)->addChild(item); - DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton); - DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton); + QTreePushButton* rButton = new QTreePushButton; + rButton->setItem(item); + rButton->setColumn(COLUMN_RELOAD_IMAGE); + rButton->setToolTip(tr("reload image")); + rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png"))); + connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), + this,SLOT(ReloadImage(QTreeWidgetItem*, int))); - //set the id of the image - QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString(); - item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str()); - UpdateTree(); - qApp->processEvents(); - ImageInfoChanged(); - QApplication::restoreOverrideCursor(); - } else { - QApplication::restoreOverrideCursor(); - QString error = "Cannot import the new image.\n"; - error += mSlicerManagers[index]->GetLastError().c_str(); - QMessageBox::information(this,tr("Problem reading image !"),error); - } + DataTree->topLevelItem(index)->setExpanded(1); + DataTree->topLevelItem(index)->addChild(item); + DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton); + DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton); + + //set the id of the image + QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString(); + item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str()); + UpdateTree(); + qApp->processEvents(); + ImageInfoChanged(); + QApplication::restoreOverrideCursor(); } else { + QApplication::restoreOverrideCursor(); QString error = "Cannot import the new image.\n"; + error += mSlicerManagers[index]->GetLastError().c_str(); QMessageBox::information(this,tr("Problem reading image !"),error); } + } else { + QString error = "Cannot import the new image.\n"; + QMessageBox::information(this,tr("Problem reading image !"),error); } } //------------------------------------------------------------------------------ @@ -2032,7 +1951,9 @@ void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk) QTreeWidgetItem *item = new QTreeWidgetItem(); item->setData(0,Qt::UserRole,filename.toStdString().c_str()); item->setData(1,Qt::UserRole,tr("vector")); - item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename); + QFileInfo fileinfo(filename); //Do not show the path + item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName()); + item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath()); qApp->processEvents(); for (int j = 1; j <= 4; j++) { @@ -2715,13 +2636,36 @@ void vvMainWindow::SurfaceViewerLaunch() vvSurfaceViewerDialog surfaceViewer; surfaceViewer.exec(); } +//------------------------------------------------------------------------------ + + +//------------------------------------------------------------------------------ +int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename) +{ + int number=0; + for(unsigned int l=0; lGetBaseFileName() == + vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) { + number = std::max(number, v->GetBaseFileNameNumber()+1); + } + } + return number; +} +//------------------------------------------------------------------------------ + //------------------------------------------------------------------------------ vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename) { + // Change filename if another image exist with the same name + int number = GetImageDuplicateFilenameNumber(filename); + + // Create new SliceManager vvSlicerManager* slicer_manager = new vvSlicerManager(4); - slicer_manager->SetImage(image); - slicer_manager->SetFilename(filename); + slicer_manager->SetImage(image);//, IMAGE, number); + // filename = filename+"_"+clitk::toString(number); + slicer_manager->SetFilename(filename, number); mSlicerManagers.push_back(slicer_manager); //create an item in the tree with good settings