X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=vv%2FvvMainWindow.cxx;h=995d3dee38a3cd2671a852619c5183acaa4b2c65;hb=1f07f247f34bf583d0228fbca5a44436d8f3f020;hp=d65be28c2d6901dca3e5d0d7a26bf06901cfdfbe;hpb=1fff4637acd0eeae350eac8e87b1abd6abd4462f;p=clitk.git diff --git a/vv/vvMainWindow.cxx b/vv/vvMainWindow.cxx index d65be28..995d3de 100644 --- a/vv/vvMainWindow.cxx +++ b/vv/vvMainWindow.cxx @@ -3,7 +3,7 @@ Authors belong to: - University of LYON http://www.universite-lyon.fr/ - - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr + - Léon Bérard cancer center http://www.centreleonberard.fr - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr This software is distributed WITHOUT ANY WARRANTY; without even @@ -14,17 +14,20 @@ - BSD See included LICENSE.txt file - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html -======================================================================-====*/ +===========================================================================**/ #include #include #include #include #include "QTreePushButton.h" +#include +#include // VV include #include "vvMainWindow.h" #include "vvHelpDialog.h" +#include "vvRegisterForm.h" #include "vvDocumentation.h" #include "vvProgressDialog.h" #include "vvQDicomSeriesSelector.h" @@ -38,37 +41,46 @@ #include "vvDeformationDialog.h" #include "vvImageWarp.h" #include "vvUtils.h" -#include "vvMaximumIntensityProjection.h" #include "vvMidPosition.h" #include "vvMesh.h" #include "vvStructSelector.h" #include "vvMeshReader.h" -#include "vvConstants.h" +#include "clitkConfiguration.h" // ITK include -#include "itkImage.h" -#include "itkImageFileReader.h" -#include "itkByteSwapper.h" -#include "itkCommand.h" -#include "itkNumericSeriesFileNames.h" +#include +#include +#include +#include +#include // VTK include -#include "vtkImageData.h" -#include "vtkImageActor.h" -#include "vtkCornerAnnotation.h" -#include "vtkRenderWindow.h" -#include "vtkRenderWindowInteractor.h" -#include "vtkRenderer.h" -#include "vtkRendererCollection.h" -#include "vtkWindowToImageFilter.h" -#include "vtkBMPWriter.h" -#include "vtkTIFFWriter.h" -#include "vtkPNMWriter.h" -#include "vtkPNGWriter.h" -#include "vtkJPEGWriter.h" +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#ifdef VTK_USE_FFMPEG_ENCODER +# include +#endif +#ifdef VTK_USE_MPEG2_ENCODER +# include +#endif +#include +#include // Standard includes #include +#include +#include #define COLUMN_TREE 0 #define COLUMN_UL_VIEW 1 @@ -79,7 +91,7 @@ #define COLUMN_RELOAD_IMAGE 6 #define COLUMN_IMAGE_NAME 7 -#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr *.SCAN )" +#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN )" /*Data Tree values 0,Qt::UserRole full filename @@ -104,6 +116,8 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() mMainWidget = this; mCurrentTime = -1; mCurrentSelectedImageId = ""; + mCurrentPickedImageId = ""; + mCurrentPickedImageIndex = 0; //Init the contextMenu this->setContextMenuPolicy(Qt::CustomContextMenu); @@ -132,18 +146,6 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() contextMenu.addSeparator(); - // QAction* actionCrop_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/crop.png")), - // tr("Crop Current Image")); - // connect(actionCrop_image,SIGNAL(triggered()),this,SLOT(CropImage())); - // contextActions.push_back(actionCrop_image); - - QAction* actionSplit_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/cut.png")), - tr("Split Current Image")); - connect(actionSplit_image,SIGNAL(triggered()),this,SLOT(SplitImage())); - contextActions.push_back(actionSplit_image); - - contextMenu.addSeparator(); - contextMenu.addAction(actionAdd_VF_to_current_Image); contextActions.push_back(actionAdd_VF_to_current_Image); @@ -155,7 +157,7 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage())); contextMenu.addAction(actionAdd_fusion_image); - connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(AddFusionImage())); + connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage())); contextActions.push_back(actionAdd_fusion_image); // TRIAL DS @@ -236,7 +238,6 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved())); //connect everything - connect(actionMaximum_Intensity_Projection,SIGNAL(triggered()),this,SLOT(ComputeMIP())); connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition())); connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration())); connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage())); @@ -245,6 +246,7 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour())); connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour())); connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages())); + connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages())); connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime())); connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime())); connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs())); @@ -252,6 +254,7 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField())); connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog())); connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation())); + connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm())); /////////////////////////////////////////////// connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage())); @@ -278,13 +281,14 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap())); connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel())); connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel())); + connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages())); connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint))); connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString))); connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString))); - connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int)),this,SLOT(SetVFProperty(int,int,int,int))); + connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double))); connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int))); connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)), this,SLOT(SetFusionProperty(int,int,double,double))); @@ -308,36 +312,66 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() //Recently opened files std::list recent_files = GetRecentlyOpenedImages(); + recentlyOpenedFilesMenu=NULL; if ( !recent_files.empty() ) { - QMenu * rmenu = new QMenu("Recently opened files..."); - rmenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png"))); - menuFile->insertMenu(actionOpen_Image_With_Time,rmenu); - for (std::list::iterator i = recent_files.begin(); i!=recent_files.end(); i++) { - QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), - (*i).c_str(),this); - rmenu->addAction(current); - connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage())); - } + createRecentlyOpenedFilesMenu(); + updateRecentlyOpenedFilesMenu(recent_files); } // Adding all new tools (insertion in the menu) vvToolManager::GetInstance()->InsertToolsInMenu(this); + vvToolManager::GetInstance()->EnableToolsInMenu(this, false); if (!CLITK_EXPERIMENTAL) menuExperimental->menuAction()->setVisible(false); + + + QTimer * timerMemory = new QTimer(this); + //timerMemory->setInterval(5); + connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage())); + timerMemory->start(2000); +} +//------------------------------------------------------------------------------ +void vvMainWindow::show() +{ + vvMainWindowBase::show(); + PopupRegisterForm(true); +} +//------------------------------------------------------------------------------ +void vvMainWindow::UpdateMemoryUsage() +{ + // clitk::PrintMemory(true); + if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA"); + else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB"); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvMainWindow::ComputeMIP() +void vvMainWindow::createRecentlyOpenedFilesMenu() { - vvMaximumIntensityProjection mip; - vvSlicerManager* selected_slicer = mSlicerManagers[GetSlicerIndexFromItem(DataTree->selectedItems()[0])]; - QFileInfo info(selected_slicer->GetFileName().c_str()); - mip.Compute(selected_slicer); - if (!mip.error) - AddImage(mip.GetOutput(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_mip.mhd"); + recentlyOpenedFilesMenu = new QMenu("Recently opened files..."); + recentlyOpenedFilesMenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png"))); + menuFile->insertMenu(actionOpen_Image_With_Time,recentlyOpenedFilesMenu); + menuFile->insertSeparator(actionOpen_Image_With_Time); +} +//------------------------------------------------------------------------------ + + +//------------------------------------------------------------------------------ + +void vvMainWindow::updateRecentlyOpenedFilesMenu(const std::list &recent_files) +{ + if(recentlyOpenedFilesMenu==NULL) { + createRecentlyOpenedFilesMenu(); + } else { + recentlyOpenedFilesMenu->clear(); + } + for (std::list::const_iterator i = recent_files.begin(); i!=recent_files.end(); i++) { + QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), i->c_str(),this); + recentlyOpenedFilesMenu->addAction(current); + connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage())); + } } //------------------------------------------------------------------------------ @@ -601,10 +635,26 @@ void vvMainWindow::MergeImages() } } if (vector.size() > 0) - LoadImages(vector, MERGED); + LoadImages(vector, vvImageReader::MERGED); } //------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ +void vvMainWindow::SliceImages() +{ + QString Extensions = EXTENSIONS; + Extensions += ";;All Files (*)"; + + QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions); + if (files.isEmpty()) + return; + mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str(); + std::vector vector; + for (int i = 0; i < files.size(); i++) + vector.push_back(files[i].toStdString()); + LoadImages(vector, vvImageReader::SLICED); +} +//------------------------------------------------------------------------------ //------------------------------------------------------------------------------ void vvMainWindow::MergeImagesWithTime() @@ -664,7 +714,7 @@ void vvMainWindow::MergeImagesWithTime() } sort(vector.begin(),vector.end()); if (vector.size() > 1) - LoadImages(vector, MERGEDWITHTIME); + LoadImages(vector, vvImageReader::MERGEDWITHTIME); else QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function."); } @@ -679,7 +729,7 @@ void vvMainWindow::OpenDicom() std::cout << "dicomSeriesSelector " << std::endl; if (dicomSeriesSelector->exec() == QDialog::Accepted) { files = *(dicomSeriesSelector->GetFilenames()); - LoadImages(files,DICOM); + LoadImages(files, vvImageReader::DICOM); } } //------------------------------------------------------------------------------ @@ -697,7 +747,7 @@ void vvMainWindow::OpenImages() std::vector vector; for (int i = 0; i < files.size(); i++) vector.push_back(files[i].toStdString()); - LoadImages(vector, IMAGE); + LoadImages(vector, vvImageReader::IMAGE); } //------------------------------------------------------------------------------ void vvMainWindow::OpenRecentImage() @@ -706,7 +756,7 @@ void vvMainWindow::OpenRecentImage() std::vector images; images.push_back(caller->text().toStdString()); mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str(); - LoadImages(images,IMAGE); + LoadImages(images, vvImageReader::IMAGE); } //------------------------------------------------------------------------------ @@ -725,26 +775,53 @@ void vvMainWindow::OpenImageWithTime() for (int i = 0; i < files.size(); i++) { vector.push_back(files[i].toStdString()); } - LoadImages(vector, IMAGEWITHTIME); + LoadImages(vector, vvImageReader::IMAGEWITHTIME); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvMainWindow::LoadImages(std::vector files, LoadedImageType filetype) +void vvMainWindow::LoadImages(std::vector files, vvImageReader::LoadedImageType filetype) { //Separate the way to open images and dicoms int fileSize; - if (filetype == IMAGE || filetype == IMAGEWITHTIME) + if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME) fileSize = files.size(); else fileSize = 1; + // For SLICED, we need the number of slices (ndim and #slices) + std::vector nSlices; + nSlices.resize(files.size()); + std::fill(nSlices.begin(), nSlices.end(), 1); + if (filetype == vvImageReader::SLICED) { + for (int i = 0; i < fileSize; i++) { + itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]); + QApplication::setOverrideCursor(QCursor(Qt::WaitCursor)); + if (!header) { + nSlices[i] = 0; + QString error = "Cannot open file \n"; + error += files[i].c_str(); + QMessageBox::information(this,tr("Reading problem"),error); + return; + } + if (header->GetNumberOfDimensions() < 3) { + nSlices[i] = 0; + QString error = "Dimension problem. Cannot slice \n"; + error += files[i].c_str(); + QMessageBox::information(this,tr("Reading problem"),error); + return; + } + nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 ); + } + } + //Only add to the list of recently opened files when a single file is opened, //to avoid polluting the list of recently opened files if (files.size() == 1) { QFileInfo finfo=tr(files[0].c_str()); AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString()); + updateRecentlyOpenedFilesMenu(GetRecentlyOpenedImages()); } //init the progress events QApplication::setOverrideCursor(QCursor(Qt::WaitCursor)); @@ -759,94 +836,99 @@ void vvMainWindow::LoadImages(std::vector files, LoadedImageType fi progress.SetProgress(i,fileSize); qApp->processEvents(); - //read the image and put it in mSlicerManagers - vvSlicerManager* imageManager = new vvSlicerManager(4); - qApp->processEvents(); + for (unsigned int j = 0; j < nSlices[i]; j++) { + //read the image and put it in mSlicerManagers + vvSlicerManager* imageManager = new vvSlicerManager(4); + qApp->processEvents(); - bool SetImageSucceed=false; + bool SetImageSucceed=false; - // Change filename if an image with the same already exist - int number = GetImageDuplicateFilenameNumber(files[i]); + // Change filename if an image with the same already exist + int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice")); - if (filetype == IMAGE || filetype == IMAGEWITHTIME) - SetImageSucceed = imageManager->SetImage(files[i],filetype, number); - else { - SetImageSucceed = imageManager->SetImages(files,filetype, number); - } - if (SetImageSucceed == false) { - QApplication::restoreOverrideCursor(); - QString error = "Cannot open file \n"; - error += imageManager->GetLastError().c_str(); - QMessageBox::information(this,tr("Reading problem"),error); - delete imageManager; - } else { - mSlicerManagers.push_back(imageManager); + if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED) + SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j); + else { + SetImageSucceed = imageManager->SetImages(files,filetype, number); + } + if (!SetImageSucceed) { + QApplication::restoreOverrideCursor(); + QString error = "Cannot open file \n"; + error += imageManager->GetLastError().c_str(); + QMessageBox::information(this,tr("Reading problem"),error); + delete imageManager; + } else { + mSlicerManagers.push_back(imageManager); - //create an item in the tree with good settings - QTreeWidgetItem *item = new QTreeWidgetItem(); - item->setData(0,Qt::UserRole,files[i].c_str()); - QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path - item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName()); - qApp->processEvents(); + //create an item in the tree with good settings + QTreeWidgetItem *item = new QTreeWidgetItem(); + item->setData(0,Qt::UserRole,files[i].c_str()); + QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path + item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName()); + item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath()); + qApp->processEvents(); - //Create the buttons for reload and close - qApp->processEvents(); - QTreePushButton* cButton = new QTreePushButton; - cButton->setItem(item); - cButton->setColumn(COLUMN_CLOSE_IMAGE); - cButton->setToolTip(tr("close image")); - cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png"))); - connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), - this,SLOT(CloseImage(QTreeWidgetItem*, int))); + //Create the buttons for reload and close + qApp->processEvents(); + QTreePushButton* cButton = new QTreePushButton; + cButton->setItem(item); + cButton->setColumn(COLUMN_CLOSE_IMAGE); + cButton->setToolTip(tr("close image")); + cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png"))); + connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), + this,SLOT(CloseImage(QTreeWidgetItem*, int))); - QTreePushButton* rButton = new QTreePushButton; - rButton->setItem(item); - rButton->setColumn(COLUMN_RELOAD_IMAGE); - rButton->setToolTip(tr("reload image")); - rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png"))); - connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), - this,SLOT(ReloadImage(QTreeWidgetItem*, int))); + QTreePushButton* rButton = new QTreePushButton; + rButton->setItem(item); + rButton->setColumn(COLUMN_RELOAD_IMAGE); + rButton->setToolTip(tr("reload image")); + rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png"))); + connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), + this,SLOT(ReloadImage(QTreeWidgetItem*, int))); - DataTree->addTopLevelItem(item); - DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton); - DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton); + DataTree->addTopLevelItem(item); + DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton); + DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton); - //set the id of the image - QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1); - item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str()); - mSlicerManagers.back()->SetId(id.toStdString()); - - linkPanel->addImage(imageManager->GetFileName(), id.toStdString()); - - connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)), - this,SLOT(CurrentImageChanged(std::string))); - connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)), - this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double))); - connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)), - this, SLOT(VectorChanged(int,double,double,double, double))); - connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)), - this, SLOT(OverlayChanged(int,double,double))); - connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)), - this, SLOT(FusionChanged(int,double))); - connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)), - this,SLOT(WindowsChanged(int, int, int))); - connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)), - this,SLOT(WindowLevelChanged(double, double, int, int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)), - this,SLOT(UpdateSlice(int,int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)), - this,SLOT(UpdateTSlice(int, int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)), - this,SLOT(UpdateSliceRange(int,int,int,int,int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)), - this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)), - this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*))); - connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)), - this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int))); - connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint())); - InitSlicers(); - numberofsuccesulreads++; + //set the id of the image + QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1); + item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str()); + mSlicerManagers.back()->SetId(id.toStdString()); + + linkPanel->addImage(imageManager->GetFileName(), id.toStdString()); + + connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)), + this,SLOT(CurrentImageChanged(std::string))); + connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)), + this, SLOT(CurrentPickedImageChanged(std::string))); + connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)), + this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double))); + connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)), + this, SLOT(VectorChanged(int,double,double,double, double))); + connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)), + this, SLOT(OverlayChanged(int,double,double))); + connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)), + this, SLOT(FusionChanged(int,double))); + connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)), + this,SLOT(WindowsChanged(int, int, int))); + connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)), + this,SLOT(WindowLevelChanged(double, double, int, int))); + connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)), + this,SLOT(UpdateSlice(int,int))); + connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)), + this,SLOT(UpdateTSlice(int, int))); + connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)), + this,SLOT(UpdateSliceRange(int,int,int,int,int))); + connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)), + this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int))); + connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)), + this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*))); + connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)), + this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int))); + connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint())); + InitSlicers(); + numberofsuccesulreads++; + } } } if (numberofsuccesulreads) { @@ -861,8 +943,6 @@ void vvMainWindow::LoadImages(std::vector files, LoadedImageType fi // Try to guess default WindowLevel double range[2]; mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range); - // DD(range[0]); - // DD(range[1]); if ((range[0] == 0) && (range[1] == 1)) { presetComboBox->setCurrentIndex(5);// binary } else { @@ -890,9 +970,6 @@ void vvMainWindow::UpdateTree() //------------------------------------------------------------------------------ void vvMainWindow::CurrentImageChanged(std::string id) { - // DD("CurrentImageChanged"); -// DD(id); -// DD(mCurrentSelectedImageId); if (id == mCurrentSelectedImageId) return; // Do nothing int selected = 0; for (int i = 0; i < DataTree->topLevelItemCount(); i++) { @@ -906,17 +983,37 @@ void vvMainWindow::CurrentImageChanged(std::string id) } DataTree->topLevelItem(selected)->setSelected(1); - // DD(mSlicerManagers[selected]->GetFileName()); mCurrentSelectedImageId = id; emit SelectedImageHasChanged(mSlicerManagers[selected]); } //------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ +void vvMainWindow::CurrentPickedImageChanged(std::string id) +{ + if (id == mCurrentPickedImageId) return; // Do nothing + int selected = 0; + for (int i = 0; i < DataTree->topLevelItemCount(); i++) { + if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) { + selected = i; + } else { + DataTree->topLevelItem(i)->setSelected(0); + } + for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++) + DataTree->topLevelItem(i)->child(child)->setSelected(0); + + } + DataTree->topLevelItem(selected)->setSelected(1); + mCurrentPickedImageId = id; + mCurrentPickedImageIndex = selected; +} +//------------------------------------------------------------------------------ + //------------------------------------------------------------------------------ void vvMainWindow::ImageInfoChanged() { - contextActions[7]->setEnabled(1); contextActions[6]->setEnabled(1); + contextActions[5]->setEnabled(1); actionSave_As->setEnabled(1); actionAdd_VF_to_current_Image->setEnabled(1); actionAdd_fusion_image->setEnabled(1); @@ -924,6 +1021,7 @@ void vvMainWindow::ImageInfoChanged() actionNorth_West_Window->setEnabled(1); actionSouth_East_Window->setEnabled(1); actionSouth_West_Window->setEnabled(1); + vvToolManager::GetInstance()->EnableToolsInMenu(this, true); inverseButton->setEnabled(1); goToCursorPushButton->setEnabled(1); @@ -944,6 +1042,7 @@ void vvMainWindow::ImageInfoChanged() std::vector inputSpacing; std::vector inputSize; std::vector sizeMM; + vtkSmartPointer transformation; int dimension=0; QString pixelType; QString inputSizeInBytes; @@ -962,8 +1061,9 @@ void vvMainWindow::ImageInfoChanged() //read image header int NPixel = 1; + vvImage::Pointer imageSelected; if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) { - vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage(); + imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage(); dimension = imageSelected->GetNumberOfDimensions(); origin.resize(dimension); inputSpacing.resize(dimension); @@ -979,7 +1079,7 @@ void vvMainWindow::ImageInfoChanged() } inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000); } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") { - vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF(); + imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF(); dimension = imageSelected->GetNumberOfDimensions(); origin.resize(dimension); inputSpacing.resize(dimension); @@ -995,7 +1095,7 @@ void vvMainWindow::ImageInfoChanged() } inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000); } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") { - vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay(); + imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay(); dimension = imageSelected->GetNumberOfDimensions(); origin.resize(dimension); inputSpacing.resize(dimension); @@ -1011,7 +1111,7 @@ void vvMainWindow::ImageInfoChanged() } inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000); } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") { - vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion(); + imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion(); dimension = imageSelected->GetNumberOfDimensions(); origin.resize(dimension); inputSpacing.resize(dimension); @@ -1038,6 +1138,8 @@ void vvMainWindow::ImageInfoChanged() infoPanel->setOrigin(GetVectorDoubleAsString(origin)); infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing)); infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")"); + transformation = imageSelected->GetTransform()->GetMatrix(); + infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation)); landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(), mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size()); @@ -1053,8 +1155,6 @@ void vvMainWindow::ImageInfoChanged() } windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow()); levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel()); - // DD(mSlicerManagers[index]->GetColorMap()); - // DD(mSlicerManagers[index]->GetPreset()); presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset()); colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap()); @@ -1118,6 +1218,23 @@ void vvMainWindow::ShowDocumentation() { documentation->show(); } +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvMainWindow::PopupRegisterForm(bool checkCanPush) +{ + vvRegisterForm* registerForm = new vvRegisterForm(QUrl("http://www.creatis.insa-lyon.fr/~dsarrut/vvregister/write.php"), getVVSettingsPath(), getSettingsOptionFormat()); + if(!checkCanPush) { + registerForm->show(); + } else { + if(registerForm->canPush()) { + registerForm->show(); + registerForm->acquitPushed();//too bad if there is not internet connection anymore. + } + } +} +//------------------------------------------------------------------------------ + //------------------------------------------------------------------------------ void vvMainWindow::ShowHelpDialog() { @@ -1128,41 +1245,37 @@ void vvMainWindow::ShowHelpDialog() //------------------------------------------------------------------------------ void vvMainWindow::ChangeViewMode() { - QListIterator it0(splitter_3->sizes()); - QListIterator it1(splitter_3->sizes()); - int max0 = 0; - int max1 = 1; - while (it0.hasNext()) { - max0 += it0.next(); - } - while (it1.hasNext()) { - max1 += it1.next(); - } - QList size0; - QList size1; + QList size; if (viewMode == 1) { viewMode = 0; - size0.push_back(max0); - size0.push_back(0); - size1.push_back(max1); - size1.push_back(0); - splitter_3->setSizes(size0); - OSplitter->setSizes(size1); + size.push_back(1); + size.push_back(0); + splitter_3->setSizes(size); + OSplitter->setSizes(size); DataTree->setColumnHidden(2,1); DataTree->setColumnHidden(3,1); DataTree->setColumnHidden(4,1); } else { viewMode = 1; - size0.push_back(int(max0/2)); - size0.push_back(int(max0/2)); - size1.push_back(int(max1/2)); - size1.push_back(int(max1/2)); - splitter_3->setSizes(size0); - OSplitter->setSizes(size1); + size.push_back(1); + size.push_back(1); + splitter_3->setSizes(size); + OSplitter->setSizes(size); DataTree->setColumnHidden(2,0); DataTree->setColumnHidden(3,0); DataTree->setColumnHidden(4,0); } + UpdateRenderWindows(); + /* + ** I don't know why but for both resized QVTKWidget we also need to render + ** the associated Slicer to redraw crosses. + */ + for (unsigned int i = 0; i < mSlicerManagers.size(); i++) { + if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) + mSlicerManagers[i]->GetSlicer(0)->Render(); + if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) + mSlicerManagers[i]->GetSlicer(2)->Render(); + } } //------------------------------------------------------------------------------ @@ -1188,6 +1301,29 @@ QString vvMainWindow::GetSizeInBytes(unsigned long size) } //------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ +QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer matrix) +{ + std::ostringstream strmatrix; + + for (unsigned int i = 0; i < 4; i++) { + for (unsigned int j = 0; j < 4; j++) { + strmatrix.flags(ios::showpos); + strmatrix.width(10); + strmatrix.precision(3); + strmatrix.setf(ios::fixed,ios::floatfield); + strmatrix.fill(' '); + strmatrix << std::left << matrix->GetElement(i, j); + //strmatrix.width(10); + strmatrix << " "; + } + strmatrix << std::endl; + } + QString result = strmatrix.str().c_str(); + return result; +} +//------------------------------------------------------------------------------ + //------------------------------------------------------------------------------ QString vvMainWindow::GetVectorDoubleAsString(std::vector vectorDouble) { @@ -1268,6 +1404,7 @@ void vvMainWindow::DisplayChanged(QTreeWidgetItem *clicked_item, int column) } } else { //We don't allow simply desactivating a slicer clicked_item->setData(column,Qt::CheckStateRole,2); + DisplayChanged(clicked_item, column); return; } } @@ -1372,12 +1509,12 @@ void vvMainWindow::DisplaySliders(int slicer, int window) bool showVertical = false; if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2 - && mSlicerManagers[slicer]->GetType() != IMAGEWITHTIME - && mSlicerManagers[slicer]->GetType() != MERGEDWITHTIME)) + && mSlicerManagers[slicer]->GetType() != vvImageReader::IMAGEWITHTIME + && mSlicerManagers[slicer]->GetType() != vvImageReader::MERGEDWITHTIME)) showVertical = true; if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3 - || mSlicerManagers[slicer]->GetType() == IMAGEWITHTIME - || mSlicerManagers[slicer]->GetType() == MERGEDWITHTIME) + || mSlicerManagers[slicer]->GetType() == vvImageReader::IMAGEWITHTIME + || mSlicerManagers[slicer]->GetType() == vvImageReader::MERGEDWITHTIME) showHorizontal = true; if (showVertical) @@ -1459,6 +1596,7 @@ void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column) InitDisplay(); } } + ImageInfoChanged(); } //------------------------------------------------------------------------------ @@ -1492,136 +1630,6 @@ void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column) } //------------------------------------------------------------------------------ -// void vvMainWindow::CropImage() -// { -// int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]); -// vvCropDialog crop(mSlicerManagers,index); -// if(crop.exec()) -// AddImage(crop.GetOutput(),"cropped.mhd"); -// } - -//------------------------------------------------------------------------------ -void vvMainWindow::SplitImage() -{ - int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]); - int dim = mSlicerManagers[index]->GetDimension(); - QString warning = "Do you really want to split the "; - warning += QString::number(dim) + "D image "; - warning += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString() + " into "; - warning += QString::number(mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1]) + " "; - warning += QString::number(dim-1) + "D images."; - QMessageBox msgBox(QMessageBox::Warning, tr("Split Image"), - warning, 0, this); - msgBox.addButton(tr("Split"), QMessageBox::AcceptRole); - msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole); - if (msgBox.exec() == QMessageBox::AcceptRole) { - QApplication::setOverrideCursor(QCursor(Qt::WaitCursor)); - if (dim > 2) { - std::string filename = DataTree->selectedItems()[0]->data(0,Qt::UserRole).toString().toStdString(); - int numberOfSlice = mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1]; - std::string path = itksys::SystemTools::GetFilenamePath( - filename); - path += "/"; - path += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString().toStdString(); - path += "%03d"; - path += itksys::SystemTools::GetFilenameLastExtension( - filename).c_str(); - - typedef itk::NumericSeriesFileNames NameGeneratorType; - NameGeneratorType::Pointer nameGenerator = NameGeneratorType::New(); - nameGenerator->SetSeriesFormat(path.c_str()); - nameGenerator->SetStartIndex(0); - nameGenerator->SetEndIndex(numberOfSlice-1); - nameGenerator->SetIncrementIndex(1); - - for (int i = 0; i < numberOfSlice; i++) { - vvSlicerManager* imageManager = new vvSlicerManager(4); - imageManager->SetExtractedImage(nameGenerator->GetFileNames()[i], - mSlicerManagers[index]->GetSlicer(0)->GetImage(), i); - mSlicerManagers.push_back(imageManager); - - //create an item in the tree with good settings - QTreeWidgetItem *item = new QTreeWidgetItem(); - item->setData(0,Qt::UserRole,nameGenerator->GetFileNames()[i].c_str()); - std::string fileI = itksys::SystemTools::GetFilenameWithoutLastExtension( - nameGenerator->GetFileNames()[i]).c_str(); - item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileI.c_str()); - for (int j = 1; j <= 4; j++) { - for (int i = 0; i < DataTree->topLevelItemCount(); i++) { - DataTree->topLevelItem(i)->setData(j,Qt::CheckStateRole,0); - } - item->setData(j,Qt::CheckStateRole,2); - } - - //Create the buttons for reload and close - QTreePushButton* cButton = new QTreePushButton; - cButton->setItem(item); - cButton->setColumn(COLUMN_CLOSE_IMAGE); - cButton->setToolTip(tr("close image")); - cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png"))); - connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), - this,SLOT(CloseImage(QTreeWidgetItem*, int))); - - QTreePushButton* rButton = new QTreePushButton; - rButton->setItem(item); - rButton->setColumn(COLUMN_RELOAD_IMAGE); - rButton->setToolTip(tr("reload image")); - rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png"))); - rButton->setEnabled(false); - connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), - this,SLOT(ReloadImage(QTreeWidgetItem*, int))); - - DataTree->addTopLevelItem(item); - DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton); - DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton); - - //set the id of the image - QString id = nameGenerator->GetFileNames()[i].c_str() + QString::number(mSlicerManagers.size()-1); - item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str()); - mSlicerManagers.back()->SetId(id.toStdString()); - linkPanel->addImage(fileI, id.toStdString()); - connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)), - this,SLOT(CurrentImageChanged(std::string))); - connect(mSlicerManagers.back(),SIGNAL( - UpdatePosition(int, double, double, double, double, double, double, double)),this, - SLOT(MousePositionChanged(int,double, double, double, double, double, double, double))); - connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)), - this, SLOT(VectorChanged(int,double,double,double, double))); - connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)), - this, SLOT(OverlayChanged(int,double,double))); - connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)), - this, SLOT(FusionChanged(int,double))); - connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)), - this,SLOT(WindowsChanged(int, int, int))); - connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)), - this,SLOT(WindowLevelChanged(double, double, int, int))); - connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)), - this,SLOT(UpdateSlice(int,int))); - connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)), - this,SLOT(UpdateTSlice(int, int))); - connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)), - this,SLOT(UpdateSliceRange(int,int,int,int,int))); - connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)), - this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)), - this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*))); - connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint())); - UpdateTree(); - qApp->processEvents(); - InitSlicers(); - InitDisplay(); - qApp->processEvents(); - } - QApplication::restoreOverrideCursor(); - } else { - QApplication::restoreOverrideCursor(); - QString error = "Cannot split file (dimensions must be greater than 2) "; - QMessageBox::information(this,tr("Splitting problem"),error); - } - } -} -//------------------------------------------------------------------------------ - //------------------------------------------------------------------------------ void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value) { @@ -1686,6 +1694,8 @@ void vvMainWindow::UpdateWindowLevel() mSlicerManagers[index]->SetColorLevel(levelSpinBox->value()); mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex()); mSlicerManagers[index]->Render(); + windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow()); + levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel()); } } //------------------------------------------------------------------------------ @@ -1710,6 +1720,20 @@ void vvMainWindow::SwitchWindowLevel() } //------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ +void vvMainWindow::ApplyWindowLevelToAllImages() +{ + for (unsigned int i = 0; i < mSlicerManagers.size(); i++) { + if (mSlicerManagers[i] == NULL) + continue; + mSlicerManagers[i]->SetColorWindow(windowSpinBox->value()); + mSlicerManagers[i]->SetColorLevel(levelSpinBox->value()); + mSlicerManagers[i]->SetPreset(6); + mSlicerManagers[i]->Render(); + } +} +//------------------------------------------------------------------------------ + //------------------------------------------------------------------------------ void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps) { @@ -1725,11 +1749,11 @@ void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, doubl //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm) +void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer) { for (unsigned int i = 0; i < mSlicerManagers.size(); i++) { if (id == mSlicerManagers[i]->GetId()) { - mSlicerManagers[i]->UpdateLinkedNavigation(sm->GetSlicer(0)); + mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer); } } } @@ -1745,7 +1769,6 @@ void vvMainWindow::ShowContextMenu(QPoint point) contextActions[4]->setEnabled(0); contextActions[5]->setEnabled(0); contextActions[6]->setEnabled(0); - contextActions[7]->setEnabled(0); } else { int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]); contextActions[1]->setEnabled(1); @@ -1755,7 +1778,6 @@ void vvMainWindow::ShowContextMenu(QPoint point) contextActions[3]->setEnabled(1); contextActions[5]->setEnabled(1); contextActions[6]->setEnabled(1); - contextActions[7]->setEnabled(1); if (mSlicerManagers[index]->GetDimension() < 3) contextActions[4]->setEnabled(0); @@ -1824,7 +1846,9 @@ void vvMainWindow::AddOverlayImage(int index, QString file) QTreeWidgetItem *item = new QTreeWidgetItem(); item->setData(0,Qt::UserRole,file.toStdString().c_str()); item->setData(1,Qt::UserRole,tr("overlay")); - item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str()); + QFileInfo fileinfo(file); //Do not show the path + item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName()); + item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath()); qApp->processEvents(); for (int j = 1; j <= 4; j++) { @@ -1876,7 +1900,6 @@ void vvMainWindow::AddOverlayImage(int index, QString file) //------------------------------------------------------------------------------ void vvMainWindow::AddROI(int index, QString file) { - DD("AddImageAndROI"); /* // Get slice manager @@ -1897,12 +1920,12 @@ void vvMainWindow::AddROI(int index, QString file) // Create roi in new tool vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi); -*/ + */ } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvMainWindow::AddFusionImage() +void vvMainWindow::SelectFusionImage() { int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]); @@ -1919,74 +1942,82 @@ void vvMainWindow::AddFusionImage() QString Extensions = EXTENSIONS; Extensions += ";;All Files (*)"; QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions); - if (!file.isEmpty()) { - mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str(); - itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO( - file.toStdString().c_str(), itk::ImageIOFactory::ReadMode); - reader->SetFileName(file.toStdString().c_str()); - reader->ReadImageInformation(); - std::string component = reader->GetComponentTypeAsString(reader->GetComponentType()); - if (reader) { - QApplication::setOverrideCursor(QCursor(Qt::WaitCursor)); - vvProgressDialog progress("Opening fusion"); - qApp->processEvents(); + if (!file.isEmpty()) + AddFusionImage(index,file); +} +//------------------------------------------------------------------------------ - std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str(); - if (mSlicerManagers[index]->SetFusion(file.toStdString(), - reader->GetNumberOfDimensions(), component)) { - //create an item in the tree with good settings - QTreeWidgetItem *item = new QTreeWidgetItem(); - item->setData(0,Qt::UserRole,file.toStdString().c_str()); - item->setData(1,Qt::UserRole,tr("fusion")); - item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str()); - qApp->processEvents(); +//------------------------------------------------------------------------------ +void vvMainWindow::AddFusionImage(int index, QString file) +{ + mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str(); + itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO( + file.toStdString().c_str(), itk::ImageIOFactory::ReadMode); + reader->SetFileName(file.toStdString().c_str()); + reader->ReadImageInformation(); + std::string component = reader->GetComponentTypeAsString(reader->GetComponentType()); + if (reader) { + QApplication::setOverrideCursor(QCursor(Qt::WaitCursor)); + vvProgressDialog progress("Opening fusion"); + qApp->processEvents(); - for (int j = 1; j <= 4; j++) { - item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole)); - mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0, - DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt()); - } + std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str(); + if (mSlicerManagers[index]->SetFusion(file.toStdString(), + reader->GetNumberOfDimensions(), component)) { + //create an item in the tree with good settings + QTreeWidgetItem *item = new QTreeWidgetItem(); + item->setData(0,Qt::UserRole,file.toStdString().c_str()); + item->setData(1,Qt::UserRole,tr("fusion")); + QFileInfo fileinfo(filename.c_str()); //Do not show the path + item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName()); + item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath()); + qApp->processEvents(); - //Create the buttons for reload and close - qApp->processEvents(); - QTreePushButton* cButton = new QTreePushButton; - cButton->setItem(item); - cButton->setColumn(COLUMN_CLOSE_IMAGE); - cButton->setToolTip(tr("close image")); - cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png"))); - connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), - this,SLOT(CloseImage(QTreeWidgetItem*, int))); + for (int j = 1; j <= 4; j++) { + item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole)); + mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0, + DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt()); + } - QTreePushButton* rButton = new QTreePushButton; - rButton->setItem(item); - rButton->setColumn(COLUMN_RELOAD_IMAGE); - rButton->setToolTip(tr("reload image")); - rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png"))); - connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), - this,SLOT(ReloadImage(QTreeWidgetItem*, int))); + //Create the buttons for reload and close + qApp->processEvents(); + QTreePushButton* cButton = new QTreePushButton; + cButton->setItem(item); + cButton->setColumn(COLUMN_CLOSE_IMAGE); + cButton->setToolTip(tr("close image")); + cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png"))); + connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), + this,SLOT(CloseImage(QTreeWidgetItem*, int))); - DataTree->topLevelItem(index)->setExpanded(1); - DataTree->topLevelItem(index)->addChild(item); - DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton); - DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton); + QTreePushButton* rButton = new QTreePushButton; + rButton->setItem(item); + rButton->setColumn(COLUMN_RELOAD_IMAGE); + rButton->setToolTip(tr("reload image")); + rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png"))); + connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)), + this,SLOT(ReloadImage(QTreeWidgetItem*, int))); - //set the id of the image - QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString(); - item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str()); - UpdateTree(); - qApp->processEvents(); - ImageInfoChanged(); - QApplication::restoreOverrideCursor(); - } else { - QApplication::restoreOverrideCursor(); - QString error = "Cannot import the new image.\n"; - error += mSlicerManagers[index]->GetLastError().c_str(); - QMessageBox::information(this,tr("Problem reading image !"),error); - } + DataTree->topLevelItem(index)->setExpanded(1); + DataTree->topLevelItem(index)->addChild(item); + DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton); + DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton); + + //set the id of the image + QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString(); + item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str()); + UpdateTree(); + qApp->processEvents(); + ImageInfoChanged(); + QApplication::restoreOverrideCursor(); } else { + QApplication::restoreOverrideCursor(); QString error = "Cannot import the new image.\n"; + error += mSlicerManagers[index]->GetLastError().c_str(); QMessageBox::information(this,tr("Problem reading image !"),error); } + } else { + QString error = "Cannot import the new image.\n"; + QMessageBox::information(this,tr("Problem reading image !"),error); } } //------------------------------------------------------------------------------ @@ -2022,7 +2053,9 @@ void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk) QTreeWidgetItem *item = new QTreeWidgetItem(); item->setData(0,Qt::UserRole,filename.toStdString().c_str()); item->setData(1,Qt::UserRole,tr("vector")); - item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename); + QFileInfo fileinfo(filename); //Do not show the path + item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName()); + item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath()); qApp->processEvents(); for (int j = 1; j <= 4; j++) { @@ -2116,7 +2149,7 @@ void vvMainWindow::AddField(QString file,int index) //------------------------------------------------------------------------------ -void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width) +void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b) { int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]); if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) { @@ -2124,6 +2157,7 @@ void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width) mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling); mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale); mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width); + mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b); if (log > 0) mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1); else @@ -2209,7 +2243,7 @@ void vvMainWindow::SaveAs() std::string action = "Saving"; vvProgressDialog progress("Saving "+fileName.toStdString()); qApp->processEvents(); - vvImageWriter *writer = new vvImageWriter; + vvImageWriter::Pointer writer = vvImageWriter::New(); writer->SetOutputFileName(fileName.toStdString()); writer->SetInput(mSlicerManagers[index]->GetImage()); writer->Update(); @@ -2237,22 +2271,34 @@ void vvMainWindow::SaveAs() //------------------------------------------------------------------------------ void vvMainWindow::AddLink(QString image1,QString image2) { + unsigned int sm1 = 0; + unsigned int sm2 = 0; + for (unsigned int i = 0; i < mSlicerManagers.size(); i++) { if (image1.toStdString() == mSlicerManagers[i]->GetId()) { mSlicerManagers[i]->AddLink(image2.toStdString()); + sm1 = i; } if (image2.toStdString() == mSlicerManagers[i]->GetId()) { mSlicerManagers[i]->AddLink(image1.toStdString()); + sm2 = i; } } + + if (linkPanel->isLinkAll()) { + emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0)); + emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0)); + } else { + emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0)); + } } + //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ void vvMainWindow::RemoveLink(QString image1,QString image2) { - // DD("vvMainWindow:RemoveLink"); for (unsigned int i = 0; i < mSlicerManagers.size(); i++) { if (image1.toStdString() == mSlicerManagers[i]->GetId()) { mSlicerManagers[i]->RemoveLink(image2.toStdString()); @@ -2273,8 +2319,8 @@ void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, i index = (index+offset) % mSlicerManagers.size(); QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]); - //CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox + CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image DisplayChanged(item,slicer+1); } //------------------------------------------------------------------------------ @@ -2387,8 +2433,6 @@ void vvMainWindow::NEVerticalSliderChanged() void vvMainWindow::SOVerticalSliderChanged() { static int value=-1; - // DD(value); -// DD(SOVerticalSlider->value()); if (value == SOVerticalSlider->value()) return; else value = SOVerticalSlider->value(); //int value = SOVerticalSlider->value(); @@ -2510,11 +2554,7 @@ void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int //------------------------------------------------------------------------------ void vvMainWindow::SaveNOScreenshot() { - vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New(); - w2i->SetInput(NOViewWidget->GetRenderWindow()); - w2i->Update(); - SaveScreenshot(w2i->GetOutput()); - w2i->Delete(); + SaveScreenshot(NOViewWidget); } //------------------------------------------------------------------------------ @@ -2522,11 +2562,7 @@ void vvMainWindow::SaveNOScreenshot() //------------------------------------------------------------------------------ void vvMainWindow::SaveNEScreenshot() { - vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New(); - w2i->SetInput(NEViewWidget->GetRenderWindow()); - w2i->Update(); - SaveScreenshot(w2i->GetOutput()); - w2i->Delete(); + SaveScreenshot(NEViewWidget); } //------------------------------------------------------------------------------ @@ -2534,11 +2570,7 @@ void vvMainWindow::SaveNEScreenshot() //------------------------------------------------------------------------------ void vvMainWindow::SaveSOScreenshot() { - vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New(); - w2i->SetInput(SOViewWidget->GetRenderWindow()); - w2i->Update(); - SaveScreenshot(w2i->GetOutput()); - w2i->Delete(); + SaveScreenshot(SOViewWidget); } //------------------------------------------------------------------------------ @@ -2546,29 +2578,38 @@ void vvMainWindow::SaveSOScreenshot() //------------------------------------------------------------------------------ void vvMainWindow::SaveSEScreenshot() { - vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New(); - w2i->SetInput(SEViewWidget->GetRenderWindow()); - w2i->Update(); - SaveScreenshot(w2i->GetOutput()); - w2i->Delete(); + SaveScreenshot(SEViewWidget); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvMainWindow::SaveScreenshot(vtkImageData* image) +void vvMainWindow::SaveScreenshot(QVTKWidget *widget) { QString Extensions = "Images( *.png);;"; Extensions += "Images( *.jpg);;"; Extensions += "Images( *.bmp);;"; Extensions += "Images( *.tif);;"; Extensions += "Images( *.ppm)"; +#ifdef VTK_USE_FFMPEG_ENCODER + Extensions += "Images( *.avi)"; +#endif +#ifdef VTK_USE_MPEG2_ENCODER + Extensions += "Images( *.mpg)"; +#endif + + int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]); QString fileName = QFileDialog::getSaveFileName(this, tr("Save As"), - itksys::SystemTools::GetFilenamePath( - mSlicerManagers[0]->GetFileName()).c_str(), + itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(), Extensions); + if (!fileName.isEmpty()) { + vtkSmartPointer w2i = vtkSmartPointer::New(); + w2i->SetInput(widget->GetRenderWindow()); + w2i->Update(); + vtkImageData *image = w2i->GetOutput(); + const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4; if (!strcmp(ext, ".bmp")) { vtkBMPWriter *bmp = vtkBMPWriter::New(); @@ -2600,11 +2641,52 @@ void vvMainWindow::SaveScreenshot(vtkImageData* image) jpg->SetFileName(fileName.toStdString().c_str()); jpg->Write(); jpg->Delete(); +#ifdef VTK_USE_FFMPEG_ENCODER + } else if (!strcmp(ext, ".avi")) { + vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New(); + mpg->SetInput(image); + mpg->SetFileName(fileName.toStdString().c_str()); + mpg->SetQuality(2); + mpg->SetRate(5); + mpg->Start(); + + vvImage * vvImg = mSlicerManagers[smIndex]->GetImage(); + int nSlice = vvImg->GetVTKImages().size(); + for(int i=0; iSetNextTSlice(0); + vtkSmartPointer w2i = vtkSmartPointer::New(); + w2i->SetInput(widget->GetRenderWindow()); + w2i->Update(); + mpg->SetInput(w2i->GetOutput()); + mpg->Write(); + } + mpg->End(); + mpg->Delete(); +#endif +#ifdef VTK_USE_MPEG2_ENCODER + } else if (!strcmp(ext, ".mpg")) { + vtkMPEG2Writer *mpg = vtkMPEG2Writer::New(); + mpg->SetInput(image); + mpg->SetFileName(fileName.toStdString().c_str()); + mpg->Start(); + + vvImage * vvImg = mSlicerManagers[smIndex]->GetImage(); + int nSlice = vvImg->GetVTKImages().size(); + for(int i=0; iSetNextTSlice(0); + vtkSmartPointer w2i = vtkSmartPointer::New(); + w2i->SetInput(widget->GetRenderWindow()); + w2i->Update(); + mpg->SetInput(w2i->GetOutput()); + mpg->Write(); + } + mpg->End(); + mpg->Delete(); +#endif } else { QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!")); } } - } //------------------------------------------------------------------------------ @@ -2715,7 +2797,7 @@ int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename) for(unsigned int l=0; lGetBaseFileName() == - vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) { + vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) { number = std::max(number, v->GetBaseFileNameNumber()+1); } } @@ -2740,7 +2822,7 @@ vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filen //create an item in the tree with good settings QTreeWidgetItem *item = new QTreeWidgetItem(); item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str()); - item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str()); + item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str()); qApp->processEvents(); for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1); @@ -2771,10 +2853,13 @@ vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filen item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str()); mSlicerManagers.back()->SetId(id.toStdString()); - linkPanel->addImage(filename, id.toStdString()); + linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename + , id.toStdString()); connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)), this, SLOT(CurrentImageChanged(std::string))); + connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)), + this, SLOT(CurrentPickedImageChanged(std::string))); connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)), this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double))); connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)), @@ -2795,8 +2880,8 @@ vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filen this,SLOT(UpdateSliceRange(int,int,int,int,int))); connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)), this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int))); - connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)), - this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*))); + connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)), + this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*))); connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)), this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int))); connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint())); @@ -2806,8 +2891,9 @@ vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filen ShowLastImage(); InitDisplay(); qApp->processEvents(); - + // End + ImageInfoChanged(); return slicer_manager; } //------------------------------------------------------------------------------