X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=vv%2FvvSlicer.cxx;h=2224a9ac9748dd6abb32b09a79185048f93137fc;hb=6e49247d08fe0af01c2a9cf53dba97ddd307077c;hp=d934d264fd382d22759bab20a2d3d478c457dcf1;hpb=bfe06a34392432cafbbca44e02e22163dccab7a4;p=clitk.git diff --git a/vv/vvSlicer.cxx b/vv/vvSlicer.cxx index d934d26..2224a9a 100644 --- a/vv/vvSlicer.cxx +++ b/vv/vvSlicer.cxx @@ -98,22 +98,6 @@ vvSlicer::vvSlicer() mVFColor[1] = 1; mVFColor[2] = 0; - std::string text = "F1 = sagital; F2 = coronal; F3 = axial\n"; - text += "F5 = horizontal flip; F6 = vertical flip\n\n"; - text += "0,1,2,3,4,5 : preset windowing\n"; - text += "6,7,8,9 : preset colormap\n"; - text += "z : local windowing\n"; - text += "r : reset view\n"; - text += "l : reload image\n"; - text += "f : fly to mouse position\n"; - text += "g : go to cross hair position\n\n"; - text += "Up,down : change slice\n"; - text += "Left,right : change tenporal slice\n\n"; - text += "Scrollbar (or w/x) : zoom in/out\n"; - text += "left button : synchronize all views\n"; - text += "middle button : grab image\n"; - text += "right button : change windowing\n"; - crossCursor = vtkSmartPointer::New(); crossCursor->AllOff(); crossCursor->AxesOn(); @@ -146,11 +130,14 @@ vvSlicer::vvSlicer() legend->SetVisibility(0); legend->SetLabelFormat("%.1f"); this->GetRenderer()->AddActor(legend); + showFusionLegend = false; this->WindowLevel->Delete(); this->WindowLevel = vvImageMapToWLColors::New(); this->InstallPipeline(); + + mLinkOverlayWindowLevel = true; } //------------------------------------------------------------------------------ @@ -172,7 +159,7 @@ vvBlendImageActor* vvSlicer::GetOverlayActor() //------------------------------------------------------------------------------ -vtkImageMapToWindowLevelColors* vvSlicer::GetFusionMapper() +vtkImageMapToColors* vvSlicer::GetFusionMapper() { return mFusionMapper.GetPointer(); } @@ -385,7 +372,8 @@ void vvSlicer::SetOverlay(vvImage::Pointer overlay) this->GetRenderer()->AddActor(mOverlayActor); //Synchronize orientation and slice - this->SetSliceOrientation(this->SliceOrientation); + AdjustResliceToSliceOrientation(mOverlayReslice); + this->UpdateDisplayExtent(); this->SetTSlice(mCurrentTSlice); } } @@ -408,7 +396,14 @@ void vvSlicer::SetFusion(vvImage::Pointer fusion) mFusionReslice->SetInput(0, mFusion->GetFirstVTKImageData()); if (!mFusionMapper) - mFusionMapper = vtkSmartPointer::New(); + mFusionMapper = vtkSmartPointer::New(); + + vtkSmartPointer lut = vtkLookupTable::New(); + lut->SetRange(0, 1); + lut->SetValueRange(0, 1); + lut->SetSaturationRange(0, 0); + lut->Build(); + mFusionMapper->SetLookupTable(lut); mFusionMapper->SetInput(mFusionReslice->GetOutput()); if (!mFusionActor) { @@ -421,7 +416,8 @@ void vvSlicer::SetFusion(vvImage::Pointer fusion) } //Synchronize orientation and slice - this->SetSliceOrientation(this->SliceOrientation); + AdjustResliceToSliceOrientation(mFusionReslice); + this->UpdateDisplayExtent(); this->SetTSlice(mCurrentTSlice); } } @@ -760,12 +756,14 @@ void vvSlicer::SetSliceOrientation(int orientation) // of the displayed image in the slicing direction. void vvSlicer::AdjustResliceToSliceOrientation(vtkImageReslice *reslice) { - // Reset autocrop - double origin[3] = {VTK_DOUBLE_MAX, VTK_DOUBLE_MAX, VTK_DOUBLE_MAX}; - double spacing[3] = {VTK_DOUBLE_MAX, VTK_DOUBLE_MAX, VTK_DOUBLE_MAX}; - reslice->SetOutputOrigin(origin); - reslice->SetOutputSpacing(spacing); + // Reset autocrop and update output information + reslice->SetOutputOriginToDefault(); + reslice->SetOutputSpacingToDefault(); reslice->GetOutput()->UpdateInformation(); + + // Ge new origin / spacing + double origin[3]; + double spacing[3]; reslice->GetOutput()->GetOrigin(origin); reslice->GetOutput()->GetSpacing(spacing); @@ -786,6 +784,7 @@ void vvSlicer::AdjustResliceToSliceOrientation(vtkImageReslice *reslice) reslice->SetOutputOrigin(origin); reslice->SetOutputSpacing(spacing); reslice->UpdateInformation(); + reslice->GetOutput()->UpdateInformation(); } //------------------------------------------------------------------------------ @@ -819,18 +818,20 @@ void vvSlicer::UpdateDisplayExtent() // Local copy of extent int w_ext[6]; - copyExtent(GetExtent(), w_ext); + int* ext = GetExtent(); + copyExtent(ext, w_ext); // Set slice value - w_ext[ this->SliceOrientation*2 ] = this->Slice; - w_ext[ this->SliceOrientation*2+1 ] = this->Slice; + int s = this->Slice > ext[this->SliceOrientation*2+1] ? ext[this->SliceOrientation*2 + 1] : this->Slice; + w_ext[ this->SliceOrientation*2 ] = s; + w_ext[ this->SliceOrientation*2+1 ] = s; // Image actor this->ImageActor->SetDisplayExtent(w_ext); // Overlay image actor if (mOverlay && mOverlayActor->GetVisibility()) { + AdjustResliceToSliceOrientation(mOverlayReslice); int overExtent[6]; - mOverlayReslice->GetOutput()->UpdateInformation(); this->ConvertImageToImageDisplayExtent(input, w_ext, mOverlayReslice->GetOutput(), overExtent); ClipDisplayedExtent(overExtent, mOverlayMapper->GetInput()->GetWholeExtent()); mOverlayActor->SetDisplayExtent( overExtent ); @@ -838,8 +839,8 @@ void vvSlicer::UpdateDisplayExtent() // Fusion image actor if (mFusion && mFusionActor->GetVisibility()) { + AdjustResliceToSliceOrientation(mFusionReslice); int fusExtent[6]; - mFusionReslice->GetOutput()->UpdateInformation(); this->ConvertImageToImageDisplayExtent(input, w_ext, mFusionReslice->GetOutput(), fusExtent); ClipDisplayedExtent(fusExtent, mFusionMapper->GetInput()->GetWholeExtent()); mFusionActor->SetDisplayExtent(fusExtent); @@ -931,7 +932,8 @@ void vvSlicer::ConvertImageToImageDisplayExtent(vtkImageData *sourceImage, const dExtents[i] = (dExtents[i]- targetImage->GetOrigin()[i/2]) / targetImage->GetSpacing()[i/2]; // Round to nearest - targetExtent[i] = itk::Math::Round(dExtents[i]); + //targetExtent[i] = itk::Math::Round(dExtents[i]); + targetExtent[i] = itk::Math::Floor(dExtents[i]); } } //---------------------------------------------------------------------------- @@ -1052,12 +1054,7 @@ void vvSlicer::ResetCamera() //---------------------------------------------------------------------------- void vvSlicer::SetDisplayMode(bool i) { - this->GetImageActor()->SetVisibility(i); - this->GetAnnotation()->SetVisibility(i); this->GetRenderer()->SetDraw(i); - if (mLandActor) - mLandActor->SetVisibility(i); - pdmA->SetVisibility(i); if (i) UpdateDisplayExtent(); } @@ -1115,63 +1112,101 @@ void vvSlicer::SetColorWindow(double window) vtkLookupTable* LUT = static_cast(this->GetWindowLevel()->GetLookupTable()); if ( LUT ) { double level = this->GetWindowLevel()->GetLevel(); - LUT->SetTableRange(level-fabs(window)/4,level+fabs(window)/4); + LUT->SetTableRange(level-fabs(window)/2,level+fabs(window)/2); LUT->Build(); } this->vtkImageViewer2::SetColorWindow(window); } //---------------------------------------------------------------------------- - //---------------------------------------------------------------------------- void vvSlicer::SetColorLevel(double level) { vtkLookupTable* LUT = static_cast(this->GetWindowLevel()->GetLookupTable()); if ( LUT ) { double window = this->GetWindowLevel()->GetWindow(); - LUT->SetTableRange(level-fabs(window)/4,level+fabs(window)/4); + LUT->SetTableRange(level-fabs(window)/2,level+fabs(window)/2); LUT->Build(); } this->vtkImageViewer2::SetColorLevel(level); } //---------------------------------------------------------------------------- +//---------------------------------------------------------------------------- +double vvSlicer::GetOverlayColorWindow() +{ + if(mOverlayMapper) + return mOverlayMapper->GetWindow(); + else + return 0.; +} +//---------------------------------------------------------------------------- + +//---------------------------------------------------------------------------- +double vvSlicer::GetOverlayColorLevel() +{ + if(mOverlayMapper) + return mOverlayMapper->GetLevel(); + else + return 0.; +} +//---------------------------------------------------------------------------- + +//---------------------------------------------------------------------------- +void vvSlicer::SetOverlayColorWindow(double window) +{ + mOverlayMapper->SetWindow(window); +} +//---------------------------------------------------------------------------- + +//---------------------------------------------------------------------------- +void vvSlicer::SetOverlayColorLevel(double level) +{ + mOverlayMapper->SetLevel(level); +} +//---------------------------------------------------------------------------- + //---------------------------------------------------------------------------- // Returns the min an the max value in a 41x41 region around the mouse pointer -void vvSlicer::GetExtremasAroundMousePointer(double & min, double & max) +void vvSlicer::GetExtremasAroundMousePointer(double & min, double & max, vtkImageData *image, vtkTransform *transform) { //Get mouse pointer position in view coordinates - double fLocalExtents[6]; + double corner1[3]; + double corner2[3]; for(int i=0; i<3; i++) { - fLocalExtents[i*2 ] = mCurrent[i]; - fLocalExtents[i*2+1] = mCurrent[i]; - } - this->Renderer->WorldToView(fLocalExtents[0], fLocalExtents[2], fLocalExtents[4]); - this->Renderer->WorldToView(fLocalExtents[1], fLocalExtents[3], fLocalExtents[5]); - for(int i=0; i<3; i++) { - if (i!=SliceOrientation) { //SR: assumes that SliceOrientation is valid in ViewCoordinates (???) - fLocalExtents[i*2 ] -= 0.2; - fLocalExtents[i*2+1] += 0.2; - } + corner1[i] = mCurrent[i]; + corner2[i] = mCurrent[i]; } - this->Renderer->ViewToWorld(fLocalExtents[0], fLocalExtents[2], fLocalExtents[4]); - this->Renderer->ViewToWorld(fLocalExtents[1], fLocalExtents[3], fLocalExtents[5]); + this->Renderer->WorldToView(corner1[0], corner1[1], corner1[2]); + this->Renderer->WorldToView(corner2[0], corner2[1], corner2[2]); + + // In view coordinates, x is the slicer width and y is the slicer height are the in-plane axis + int w, h; + this->Renderer->GetTiledSize(&w, &h); + corner1[0] -= 0.2*h/(double)w; + corner2[0] += 0.2*h/(double)w; + corner1[1] -= 0.2; + corner2[1] += 0.2; + this->Renderer->ViewToWorld(corner1[0], corner1[1], corner1[2]); + this->Renderer->ViewToWorld(corner2[0], corner2[1], corner2[2]); //Convert to image pixel coordinates (rounded) + transform->TransformPoint(corner1, corner1); + transform->TransformPoint(corner2, corner2); int iLocalExtents[6]; for(int i=0; i<3; i++) { - fLocalExtents[i*2 ] = (fLocalExtents[i*2 ] - this->GetInput()->GetOrigin()[i])/this->GetInput()->GetSpacing()[i]; - fLocalExtents[i*2+1] = (fLocalExtents[i*2+1] - this->GetInput()->GetOrigin()[i])/this->GetInput()->GetSpacing()[i]; + corner1[i] = (corner1[i] - image->GetOrigin()[i])/image->GetSpacing()[i]; + corner2[i] = (corner2[i] - image->GetOrigin()[i])/image->GetSpacing()[i]; - iLocalExtents[i*2 ] = lrint(fLocalExtents[i*2 ]); - iLocalExtents[i*2+1] = lrint(fLocalExtents[i*2+1]); + iLocalExtents[i*2 ] = lrint(corner1[i]); + iLocalExtents[i*2+1] = lrint(corner2[i]); if(iLocalExtents[i*2 ]>iLocalExtents[i*2+1]) std::swap(iLocalExtents[i*2], iLocalExtents[i*2+1]); } vtkSmartPointer voiFilter = vtkSmartPointer::New(); - voiFilter->SetInput(this->GetInput()); + voiFilter->SetInput(image); voiFilter->SetVOI(iLocalExtents); voiFilter->Update(); if (!voiFilter->GetOutput()->GetNumberOfPoints()) { @@ -1212,8 +1247,14 @@ double vvSlicer::GetScalarComponentAsDouble(vtkImageData *image, double X, doubl //---------------------------------------------------------------------------- void vvSlicer::Render() { - if (this->GetWindowLevel()->GetLookupTable() && !this->mOverlay && !this->mFusion) { + if (this->mFusion && mFusionActor->GetVisibility() && showFusionLegend) { + legend->SetLookupTable(this->GetFusionMapper()->GetLookupTable()); + legend->UseOpacityOn(); + legend->SetVisibility(1); + } + else if (this->GetWindowLevel()->GetLookupTable() && !this->mOverlay) { legend->SetLookupTable(this->GetWindowLevel()->GetLookupTable()); + legend->UseOpacityOff(); legend->SetVisibility(1); } else legend->SetVisibility(0); @@ -1241,7 +1282,9 @@ void vvSlicer::Render() int ix, iy, iz; double value = this->GetScalarComponentAsDouble(this->GetInput(), X, Y, Z, ix, iy, iz); - worldPos << "data value : " << value << std::endl; + if(ImageActor->GetVisibility()) + worldPos << "data value : " << value << std::endl; + worldPos << "mm : " << lrint(mCurrent[0]) << ' ' << lrint(mCurrent[1]) << ' ' << lrint(mCurrent[2]) << ' ' @@ -1284,8 +1327,10 @@ void vvSlicer::Render() if (mOverlay && mOverlayActor->GetVisibility()) { - mOverlayMapper->SetWindow(this->GetColorWindow()); - mOverlayMapper->SetLevel(this->GetColorLevel()); + if(mLinkOverlayWindowLevel) { + mOverlayMapper->SetWindow(this->GetColorWindow()); + mOverlayMapper->SetLevel(this->GetColorLevel()); + } mOverlayMapper->GetOutput()->SetUpdateExtent(mOverlayActor->GetDisplayExtent()); mOverlayMapper->GetOutput()->Update(); mOverlayMapper->Update(); @@ -1301,13 +1346,11 @@ void vvSlicer::Render() //---------------------------------------------------------------------------- void vvSlicer::UpdateCursorPosition() { - if (this->GetImageActor()->GetVisibility()) { - pdmA->SetVisibility(true); - mCursor[0] = mCurrent[0]; - mCursor[1] = mCurrent[1]; - mCursor[2] = mCurrent[2]; - mCursor[3] = mCurrentTSlice; - } + pdmA->SetVisibility(true); + mCursor[0] = mCurrent[0]; + mCursor[1] = mCurrent[1]; + mCursor[2] = mCurrent[2]; + mCursor[3] = mCurrentTSlice; } //----------------------------------------------------------------------------