X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=vv%2FvvSlicer.cxx;h=ce6d335abdd69cac344c49c0305f596be7fb9ebf;hb=99b8973aa53da85bd951268f29495311a1e3471f;hp=0e3b3bf1fe9b870ba1b2be414a1b07d11ddc9282;hpb=6737ce63544c20aba27b1cdecbca1b4e53606691;p=clitk.git diff --git a/vv/vvSlicer.cxx b/vv/vvSlicer.cxx index 0e3b3bf..ce6d335 100644 --- a/vv/vvSlicer.cxx +++ b/vv/vvSlicer.cxx @@ -57,6 +57,7 @@ #include #include #include +#include #include #include @@ -75,8 +76,8 @@ #include #include #include -#include #if VTK_MAJOR_VERSION >= 6 || (VTK_MAJOR_VERSION >= 5 && VTK_MINOR_VERSION >= 10) +# include # include # include #endif @@ -149,10 +150,10 @@ vvSlicer::vvSlicer() legend = vtkSmartPointer::New(); //legend->SetTitle("test!"); - legend->SetPosition(0.82,0.18); - legend->SetWidth(0.1); + legend->SetPosition(0.82,0.08); + //legend->SetWidth(0.1); legend->SetVisibility(0); - legend->SetLabelFormat("%.1f"); + legend->SetLabelFormat("%.1e"); this->GetRenderer()->AddActor(legend); showFusionLegend = false; @@ -169,6 +170,7 @@ vvSlicer::vvSlicer() mConcatenatedTransform = vtkSmartPointer::New(); mConcatenatedFusionTransform = vtkSmartPointer::New(); mConcatenatedOverlayTransform = vtkSmartPointer::New(); + mConcatenatedVFTransform = vtkSmartPointer::New(); mFirstSetSliceOrientation = true; } //------------------------------------------------------------------------------ @@ -322,6 +324,13 @@ double* vvSlicer::GetCurrentPosition() } //------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ +void vvSlicer::SetInterpolationImageReslice(int interpolation) +{ + mImageReslice->SetInterpolationMode(interpolation); +} +//------------------------------------------------------------------------------ + //------------------------------------------------------------------------------ void vvSlicer::SetCurrentPosition(double x, double y, double z, int t) { @@ -351,6 +360,7 @@ void vvSlicer::SetImage(vvImage::Pointer image) mConcatenatedTransform->Concatenate(mImage->GetTransform()[0]); mConcatenatedTransform->Concatenate(mSlicingTransform); mImageReslice->SetResliceTransform(mConcatenatedTransform); + //mImageReslice->SetResliceAxes(mConcatenatedTransform->GetMatrix()); #if VTK_MAJOR_VERSION <= 5 mImageReslice->SetInput(0, mImage->GetFirstVTKImageData()); #else @@ -417,6 +427,7 @@ void vvSlicer::SetOverlay(vvImage::Pointer overlay) mOverlayReslice->SetResliceTransform(mConcatenatedOverlayTransform); #if VTK_MAJOR_VERSION <= 5 mOverlayReslice->SetInput(0, mOverlay->GetFirstVTKImageData()); + mImageReslice->UpdateInformation(); #else mOverlayReslice->SetInputData(0, mOverlay->GetFirstVTKImageData()); #endif @@ -483,6 +494,7 @@ void vvSlicer::SetFusion(vvImage::Pointer fusion, int fusionSequenceCode) mFusionReslice->SetResliceTransform(mConcatenatedFusionTransform); #if VTK_MAJOR_VERSION <= 5 mFusionReslice->SetInput(0, mFusion->GetFirstVTKImageData()); + mFusionReslice->UpdateInformation(); #else mFusionReslice->SetInputData(0, mFusion->GetFirstVTKImageData()); #endif @@ -572,15 +584,31 @@ void vvSlicer::SetVF(vvImage::Pointer vf) mVFVisibility = true; if (!mAAFilter) { + mVFReslice = vtkSmartPointer::New(); + mVFReslice->SetInterpolationModeToLinear(); + mVFReslice->AutoCropOutputOn(); + mVFReslice->SetBackgroundColor(-1000,-1000,-1000,1); mAAFilter= vtkSmartPointer::New(); mVOIFilter = vtkSmartPointer::New(); mVOIFilter->SetSampleRate(mSubSampling,mSubSampling,mSubSampling); } + + mConcatenatedVFTransform->Identity(); + mConcatenatedVFTransform->Concatenate(mVF->GetTransform()[0]); + mConcatenatedVFTransform->Concatenate(mSlicingTransform); + mVFReslice->SetResliceTransform(mConcatenatedVFTransform); #if VTK_MAJOR_VERSION <= 5 - mVOIFilter->SetInput(vf->GetFirstVTKImageData()); + mVFReslice->SetInput(0, mVF->GetFirstVTKImageData()); +#else + mVFReslice->SetInputData(0, mVF->GetFirstVTKImageData()); +#endif + mVFReslice->Update(); + +#if VTK_MAJOR_VERSION <= 5 + mVOIFilter->SetInput(mVFReslice->GetOutput()); mAAFilter->SetInput(mVOIFilter->GetOutput()); #else - mVOIFilter->SetInputData(vf->GetFirstVTKImageData()); + mVOIFilter->SetInputConnection(mVFReslice->GetOutputPort()); mAAFilter->SetInputConnection(mVOIFilter->GetOutputPort()); #endif ///This tells VTK to use the scalar (pixel) data of the image to draw the little arrows @@ -669,12 +697,24 @@ void vvSlicer::SetLandmarks(vvLandmarks* landmarks) mLandClipper->SetClipFunction(mClipBox); mLandClipper->InsideOutOn(); #if VTK_MAJOR_VERSION <= 5 - mLandClipper->SetInput(mLandmarks->GetOutput()); + mLandmarkTransform = vtkSmartPointer::New(); + mLandmarkTransform->SetInput(mLandmarks->GetOutput()); + mConcatenatedTransform->Identity(); + mConcatenatedTransform->Concatenate(mImage->GetTransform()[0]); + mConcatenatedTransform->Concatenate(mSlicingTransform); + mLandmarkTransform->SetTransform(mConcatenatedTransform->GetInverse()); + mLandClipper->SetInput(mLandmarkTransform->GetOutput()); mLandGlyph->SetSource(mCross->GetOutput()); mLandGlyph->SetInput(mLandClipper->GetOutput()); #else - mLandClipper->SetInputData(mLandmarks->GetOutput()); + mLandmarkTransform = vtkSmartPointer::New(); + mLandmarkTransform->SetInputData(mLandmarks->GetOutput()); + mConcatenatedTransform->Identity(); + mConcatenatedTransform->Concatenate(mImage->GetTransform()[0]); + mConcatenatedTransform->Concatenate(mSlicingTransform); + mLandmarkTransform->SetTransform(mConcatenatedTransform->GetInverse()); + mLandClipper->SetInputConnection(mLandmarkTransform->GetOutputPort()); mLandGlyph->SetSourceConnection(mCross->GetOutputPort()); mLandGlyph->SetInputConnection(mLandClipper->GetOutputPort()); @@ -697,7 +737,6 @@ void vvSlicer::SetLandmarks(vvLandmarks* landmarks) mLandActor->SetPickable(0); mLandActor->SetVisibility(true); this->UpdateDisplayExtent(); - this->GetRenderer()->AddActor(mLandActor); } } //------------------------------------------------------------------------------ @@ -824,10 +863,14 @@ void vvSlicer::SetTSlice(int t, bool updateLinkedImages) if (mVF && mVFActor->GetVisibility()) { if (mVF->GetVTKImages().size() > (unsigned int)mCurrentTSlice) #if VTK_MAJOR_VERSION <= 5 - mVOIFilter->SetInput(mVF->GetVTKImages()[mCurrentTSlice]); + mVFReslice->SetInput(mVF->GetVTKImages()[mCurrentTSlice]); #else - mVOIFilter->SetInputData(mVF->GetVTKImages()[mCurrentTSlice]); + mVFReslice->SetInputData(mVF->GetVTKImages()[mCurrentTSlice]); #endif + // Update overlay transform + mConcatenatedVFTransform->Identity(); + mConcatenatedVFTransform->Concatenate(mVF->GetTransform()[mCurrentTSlice]); + mConcatenatedVFTransform->Concatenate(mSlicingTransform); } //update the overlay if (mOverlay && mOverlayActor->GetVisibility()) { @@ -903,9 +946,9 @@ int vvSlicer::GetTSlice() int vvSlicer::GetMaxCurrentTSlice() { int t = mCurrentTSlice; - if(mOverlay) + if(mOverlay && mOverlayActor->GetVisibility()) t = std::max(t, mCurrentOverlayTSlice); - if(mFusion&& (mFusionSequenceCode<0)) //ignore fusionSequence data: for these, the times are not to be related (this way) + if(mFusion&& (mFusionSequenceCode<0) && mFusionActor->GetVisibility()) //ignore fusionSequence data: for these, the times are not to be related (this way) t = std::max(t, mCurrentFusionTSlice); return t; } @@ -954,6 +997,9 @@ void vvSlicer::SetSliceOrientation(int orientation) if(mOverlay) AdjustResliceToSliceOrientation(mOverlayReslice); + if(mVF) + AdjustResliceToSliceOrientation(mVFReslice); + // Update the viewer // Go to current cursor position @@ -1037,6 +1083,9 @@ void vvSlicer::AdjustResliceToSliceOrientation(vtkImageReslice *reslice) reslice->SetOutputOrigin(origin); reslice->SetOutputSpacing(spacing); reslice->UpdateInformation(); +#if VTK_MAJOR_VERSION <= 5 + reslice->GetOutput()->UpdateInformation(); +#endif } //------------------------------------------------------------------------------ @@ -1168,14 +1217,15 @@ void vvSlicer::UpdateDisplayExtent() offset = -1; if (mVF && mVFVisibility) { + AdjustResliceToSliceOrientation(mVFReslice); int vfExtent[6]; #if VTK_MAJOR_VERSION <= 5 mVF->GetVTKImages()[0]->UpdateInformation(); - this->ConvertImageToImageDisplayExtent(input, w_ext, mVF->GetVTKImages()[0], vfExtent); + this->ConvertImageToImageDisplayExtent(input, w_ext, mVFReslice->GetOutput(), vfExtent); bool out = ClipDisplayedExtent(vfExtent, mVOIFilter->GetInput()->GetWholeExtent()); #else - //this->UpdateInformation(); - this->ConvertImageToImageDisplayExtent(mImageReslice->GetOutputInformation(0), w_ext, mVF->GetVTKImages()[0], vfExtent); + mVOIFilter->Update(); + this->ConvertImageToImageDisplayExtent(mImageReslice->GetOutputInformation(0), w_ext, mVFReslice->GetOutput(), vfExtent); bool out = ClipDisplayedExtent(vfExtent, mVOIFilter->GetInputInformation()->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT())); #endif mVFActor->SetVisibility(!out); @@ -1549,11 +1599,15 @@ void vvSlicer::GetExtremasAroundMousePointer(double & min, double & max, vtkImag if(iLocalExtents[i*2 ]>iLocalExtents[i*2+1]) std::swap(iLocalExtents[i*2], iLocalExtents[i*2+1]); - if(iLocalExtents[i*2]< mImageReslice->GetInputInformation()->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT())[2*i]) - iLocalExtents[i*2] = mImageReslice->GetInputInformation()->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT())[2*i]; +#if VTK_MAJOR_VERSION > 5 + for(int j=0;j<2; j++) { + if(iLocalExtents[i*2+j]< mImageReslice->GetInputInformation()->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT())[2*i]) + iLocalExtents[i*2+j] = mImageReslice->GetInputInformation()->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT())[2*i]; - if(iLocalExtents[i*2+1]> mImageReslice->GetInputInformation()->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT())[2*i+1]) - iLocalExtents[i*2+1] = mImageReslice->GetInputInformation()->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT())[2*i+1]; + if(iLocalExtents[i*2+j]> mImageReslice->GetInputInformation()->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT())[2*i+1]) + iLocalExtents[i*2+j] = mImageReslice->GetInputInformation()->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT())[2*i+1]; + } +#endif } vtkSmartPointer voiFilter = vtkSmartPointer::New(); @@ -1610,7 +1664,6 @@ double vvSlicer::GetScalarComponentAsDouble(vtkImageData *image, double X, doubl //image->SetUpdateExtent(ix, ix, iy, iy, iz, iz); //image->Update(); #endif - return image->GetScalarComponentAsDouble(ix, iy, iz, component); } //---------------------------------------------------------------------------- @@ -1630,7 +1683,6 @@ void vvSlicer::Render() } else legend->SetVisibility(0); if (ca->GetVisibility()) { - std::stringstream worldPos(" "); double pt[3]; mConcatenatedTransform->TransformPoint(mCurrent, pt); @@ -1644,25 +1696,6 @@ void vvSlicer::Render() Y <= mImage->GetVTKImages()[mCurrentTSlice]->GetWholeExtent()[3]+0.5 && Z >= mImage->GetVTKImages()[mCurrentTSlice]->GetWholeExtent()[4]-0.5 && Z <= mImage->GetVTKImages()[mCurrentTSlice]->GetWholeExtent()[5]+0.5) { - - - int ix, iy, iz; - double value = this->GetScalarComponentAsDouble(mImage->GetVTKImages()[mCurrentTSlice], X, Y, Z, ix, iy, iz); - - if(ImageActor->GetVisibility()) - worldPos << "data value : " << value << std::endl; - - worldPos << "mm : " << lrint(mCurrentBeforeSlicingTransform[0]) << ' ' - << lrint(mCurrentBeforeSlicingTransform[1]) << ' ' - << lrint(mCurrentBeforeSlicingTransform[2]) << ' ' - << mCurrentTSlice - << std::endl; - worldPos << "pixel : " << ix << ' ' - << iy << ' ' - << iz << ' ' - << mCurrentTSlice - << std::endl; - } #else if (X >= mImage->GetVTKImages()[mCurrentTSlice]->GetInformation()->Get(vtkDataObject::DATA_EXTENT())[0]-0.5 && X <= mImage->GetVTKImages()[mCurrentTSlice]->GetInformation()->Get(vtkDataObject::DATA_EXTENT())[1]+0.5 && @@ -1670,16 +1703,14 @@ void vvSlicer::Render() Y <= mImage->GetVTKImages()[mCurrentTSlice]->GetInformation()->Get(vtkDataObject::DATA_EXTENT())[3]+0.5 && Z >= mImage->GetVTKImages()[mCurrentTSlice]->GetInformation()->Get(vtkDataObject::DATA_EXTENT())[4]-0.5 && Z <= mImage->GetVTKImages()[mCurrentTSlice]->GetInformation()->Get(vtkDataObject::DATA_EXTENT())[5]+0.5) { - +#endif int ix, iy, iz; double value = this->GetScalarComponentAsDouble(mImage->GetVTKImages()[mCurrentTSlice], X, Y, Z, ix, iy, iz); - if(ImageActor->GetVisibility()) worldPos << "data value : " << value << std::endl; - - worldPos << "mm : " << lrint(mCurrentBeforeSlicingTransform[0]) << ' ' - << lrint(mCurrentBeforeSlicingTransform[1]) << ' ' - << lrint(mCurrentBeforeSlicingTransform[2]) << ' ' + worldPos << "mm : " << lrint(mCurrent[0]) << ' ' + << lrint(mCurrent[1]) << ' ' + << lrint(mCurrent[2]) << ' ' << mCurrentTSlice << std::endl; worldPos << "pixel : " << ix << ' ' @@ -1689,7 +1720,6 @@ void vvSlicer::Render() << std::endl; } -#endif ca->SetText(1,worldPos.str().c_str()); std::stringstream slicePos; @@ -1798,7 +1828,7 @@ void vvSlicer::UpdateCursorPosition() //---------------------------------------------------------------------------- void vvSlicer::RemoveLandmarks() { - vtkPolyData *pd = static_cast(mLandClipper->GetInput()); + vtkPolyData *pd = static_cast(mLandmarks->GetOutput()); if (pd->GetPoints()) { //First remove all captions: @@ -1824,12 +1854,12 @@ void vvSlicer::DisplayLandmarks() mClipBox->SetBounds(bounds); - vtkPolyData *pd = static_cast(mLandClipper->GetInput()); + vtkPolyData *pd = static_cast(mLandmarks->GetOutput()); if (pd->GetPoints()) { + this->GetRenderer()->AddActor(mLandActor); //mLandGlyph->SetRange(0,1); //mLandGlyph->Modified(); //mLandGlyph->Update(); - mClipBox->Modified(); mLandClipper->Update(); mLandMapper->Update();