X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=vv%2FvvSlicerManager.h;h=4acb1668cd22ed64e4b20abf07e883671771982a;hb=d98418e7948315cd8c6ae9a2d5452ef0b52f9827;hp=345bab8febbe94691d8c62304b45c55622da2cf6;hpb=b0a0cdf6be555105c5f3f2ece2bc51f6cd9a074c;p=clitk.git

diff --git a/vv/vvSlicerManager.h b/vv/vvSlicerManager.h
index 345bab8..4acb166 100644
--- a/vv/vvSlicerManager.h
+++ b/vv/vvSlicerManager.h
@@ -4,7 +4,7 @@
 
   Authors belong to: 
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -15,7 +15,7 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-  ======================================================================-====*/
+  ===========================================================================**/
 
 #ifndef VVSLICERMANAGER_H
 #define VVSLICERMANAGER_H
@@ -36,21 +36,35 @@ class vtkRenderWindow;
 class vtkPolyData;
 
 // VV
-#include "vvConstants.h"
 #include "clitkCommon.h"
 #include "vvImage.h"
 #include "vvMesh.h"
+#include "vvImageReader.h"
+
 class vvSlicer;
 class vvInteractorStyleNavigator;
 class vvImageReader;
 class vvImageReader;
 class vvLandmarks;
 
+enum WindowLevelPreset {
+  WL_AUTO,
+  WL_HOUNSFIELD,
+  WL_SOFTTISSUE,
+  WL_LUNGS,
+  WL_BONES,
+  WL_HEAD,
+  WL_BINARY,
+  WL_USER,
+  WL_VENTILATION
+};
+
 //------------------------------------------------------------------------------
 class vvSlicerManager : public QObject {
   Q_OBJECT
 
   public:
+  typedef enum {WORLD_SLICING, VOXELS_SLICING} SlicingPresetType;
   vvSlicerManager(int numberOfSlicers);
   ~vvSlicerManager();
 
@@ -58,12 +72,13 @@ class vvSlicerManager : public QObject {
     return mLastError;
   }
 
-  bool SetImage(std::string filename,LoadedImageType type, int n=0, unsigned int slice=0);
+  bool SetImage(std::string filename, vvImageReader::LoadedImageType type, int n=0, unsigned int slice=0);
   void SetImage(vvImage::Pointer image);
-  bool SetImages(std::vector<std::string> filenames, LoadedImageType type, int n=0);
+  bool SetImages(std::vector<std::string> filenames, vvImageReader::LoadedImageType type, int n=0, bool patientCoordinateSystem=0);
 
-  bool SetOverlay(std::string filename, int dim, std::string component);
-  bool SetFusion(std::string filename, int dim, std::string component);
+  bool SetOverlay(std::vector<std::string> filenames, int dim, std::string component, vvImageReader::LoadedImageType type);
+  bool SetFusion(std::vector<std::string> filenames,int dim, std::string component, vvImageReader::LoadedImageType type);
+  bool SetFusionSequence(std::vector<std::string> filenames, int dim, std::string component, vvImageReader::LoadedImageType type);
   ///Set a VF by loading it from the disk
   bool SetVF(std::string filename);
   ///Set a VF from memory
@@ -79,10 +94,15 @@ class vvSlicerManager : public QObject {
   std::string GetVFName()        { return mVFName; }
   std::string GetOverlayName()   { return mOverlayName; }
   std::string GetFusionName()    { return mFusionName; }
+  std::string GetListOfAbsoluteFilePathInOneString(const std::string &actorType);
 
   ///Switch between nearest neighbor and linear interpolation
   void ToggleInterpolation();
   vvSlicer* GetSlicer(int i);
+  int GetSelectedSlicer() {
+    return mSelectedSlicer;
+  }
+  
   void UpdateSlicer(int num, bool state);
   void SetSlicerWindow(int i, vtkRenderWindow* RW);
   void SetInteractorStyleNavigator(int i,vtkInteractorStyle* style);
@@ -92,7 +112,7 @@ class vvSlicerManager : public QObject {
   vvImage::Pointer GetVF()     { return mVF; }
   int GetType()                { return mType; }
   void SetId(std::string id)   { mId = id; }
-  std::string GetId()          { return mId; }
+  std::string GetId()  const        { return mId; }
   int GetDimension() {
     if (mImage) return mImage->GetNumberOfDimensions();
     else return -1;
@@ -100,17 +120,23 @@ class vvSlicerManager : public QObject {
 
   void SetFilename(std::string f, int number=0);
 
-  void SetTSlice(int slice);
+  void SetSliceOrientation(int slicer, int orientation);
+  int GetTSlice();
+  void SetTSlice(int slice, bool updateLinkedImages = true);
   void SetNextTSlice(int originating_slicer);
   void SetPreviousTSlice(int originating_slicer);
   void SetTSliceInSlicer(int tslice, int slicer);
 
+  void SetFusionSequenceTSlice(int slice);
+
   void GenerateDefaultLookupTable();
   void SetColorWindow(double s);
   void SetColorLevel(double s);
-  void SetLocalColorWindowing(const int slicer);
+  void SetOverlayColorWindow(double s);
+  void SetOverlayColorLevel(double s);
+  void SetLinkOverlayWindowLevel(bool b);
+  void SetLocalColorWindowing(const int slicer, const bool bCtrlKey);
   void SetOpacity(int i, double factor);
-  void SetColorMap();
   void SetColorMap(int colormap);
   void SetPreset(int preset);
   void SetOverlayColor(int color) {
@@ -119,6 +145,9 @@ class vvSlicerManager : public QObject {
   void SetFusionOpacity(int opacity) {
     mFusionOpacity = opacity;
   }
+  void SetFusionThresholdOpacity(int thresOpacity) {
+    mFusionThresOpacity = thresOpacity;
+  }
   void SetFusionColorMap(int colorMap) {
     mFusionColorMap = colorMap;
   }
@@ -128,36 +157,85 @@ class vvSlicerManager : public QObject {
   void SetFusionLevel(double level) {
     mFusionLevel = level;
   }
+  void SetFusionShowLegend(int show) {
+    mFusionShowLegend = show;
+  }
+
+
+  //set/get fusionSequence related data
+  void SetFusionSequenceFrameIndex(int sequenceFrameIndex) { mFusionSequenceFrameIndex = sequenceFrameIndex; }
+  void SetFusionSequenceSpatialSyncFlag(bool spatialSync) { mFusionSequenceSpatialSyncFlag = spatialSync; }
+  void SetFusionSequenceTemporalSyncFlag(bool temporalSync) { mFusionSequenceTemporalSyncFlag = temporalSync; }
+  void SetFusionSequenceLength(unsigned int fusionSequenceNbFrames) { mFusionSequenceNbFrames = fusionSequenceNbFrames; }
+  void SetFusionSequenceMainTransformMatrix(vtkSmartPointer<vtkMatrix4x4> mat) { 
+	  mFusionSequenceMainTransform = vtkSmartPointer<vtkMatrix4x4>::New();
+	  mFusionSequenceMainTransform->DeepCopy(mat);
+  }
+  void AddFusionSequenceInitialTransformMatrices(vtkSmartPointer<vtkMatrix4x4> mat) { 
+		vtkSmartPointer<vtkMatrix4x4> tmpMat = vtkSmartPointer<vtkMatrix4x4>::New();
+		tmpMat->DeepCopy(mat);
+		mFusionSequenceListInitialTransformMatrices.push_back( tmpMat );
+  }
+  void SetFusionSequenceIndexOfLinkedManager(int index) { mFusionSequenceIndexLinkedManager = index; }
+  void SetFusionSequenceCorrespondances(std::vector<unsigned> s) { mFusionSequenceCorrespondances = s; }
+  
+  void SetFusionSequenceInvolvmentCode(int code) { mFusionSequenceInvolvementCode=code; }
+  int GetFusionSequenceInvolvmentCode() { return mFusionSequenceInvolvementCode;}
+  bool IsInvolvedInFusionSequence() {return (!(mFusionSequenceInvolvementCode==-1));}
+  bool IsMainSequenceOfFusionSequence() {return (mFusionSequenceInvolvementCode==0);}
+  bool IsSecondarySequenceOfFusionSequence() {return (mFusionSequenceInvolvementCode==1);}
+
+  int GetFusionSequenceIndexOfLinkedManager() { return mFusionSequenceIndexLinkedManager; }
+  int GetFusionSequenceFrameIndex() { return mFusionSequenceFrameIndex; }
+  bool GetFusionSequenceSpatialSyncFlag() { return mFusionSequenceSpatialSyncFlag; }
+  bool GetFusionSequenceTemporalSyncFlag() { return mFusionSequenceTemporalSyncFlag; }
+  unsigned int GetFusionSequenceNbFrames() { return mFusionSequenceNbFrames; }
+  const vtkSmartPointer<vtkMatrix4x4>& GetFusionSequenceMainTransformMatrix() {return mFusionSequenceMainTransform;}
+  const std::vector< vtkSmartPointer<vtkMatrix4x4> >& GetFusionSequenceInitialTransformMatrices() {return mFusionSequenceListInitialTransformMatrices;}
+  const vtkSmartPointer<vtkMatrix4x4>& GetFusionSequenceInitialTransformMatrixAtFrame(unsigned i) {
+	  return mFusionSequenceListInitialTransformMatrices[i];
+  }
+  const std::vector<unsigned>& GetFusionSequenceCorrespondances() {return mFusionSequenceCorrespondances;}
 
-  double GetColorWindow();
-  double GetColorLevel();
+  double GetColorWindow() const;
+  double GetColorLevel() const;
+  double GetOverlayColorWindow() const;
+  double GetOverlayColorLevel() const;
+  bool GetLinkOverlayWindowLevel() const;
   int GetColorMap() {
     return mColorMap;
   }
-  int GetPreset() {
+  int GetPreset() const {
     return mPreset;
   }
-  int GetOverlayColor() {
+  SlicingPresetType GetSlicingPreset() {
+    return mSlicingPreset;
+  }
+  int GetOverlayColor() const {
     return mOverlayColor;
   }
-
-  int GetFusionOpacity() {
+  int GetFusionOpacity() const {
     return mFusionOpacity;
   }
-  int GetFusionColorMap() {
+  int GetFusionThresholdOpacity() const {
+    return mFusionThresOpacity;
+  }
+  int GetFusionColorMap() const {
     return mFusionColorMap;
   }
-  double GetFusionWindow() {
+  double GetFusionWindow() const {
     return mFusionWindow;
   }
-  double GetFusionLevel() {
+  double GetFusionLevel() const {
     return mFusionLevel;
   }
 
+
   void SetCursorAndCornerAnnotationVisibility(int s);
   void UpdateViews(int current, int slicer);
   void UpdateLinked(int slicer);
   void UpdateLinkedNavigation(vvSlicer *slicer, bool bPropagate=false);
+  void ResetTransformationToIdentity(const std::string actorType);
   void Render();
 
   void AddLink(std::string newId) {
@@ -166,6 +244,14 @@ class vvSlicerManager : public QObject {
   void RemoveLink(std::string oldId) {
     mLinkedId.remove(oldId); 
   }
+  
+  std::list<std::string> GetLinks() const {
+    return mLinkedId;
+  }
+  
+  bool IsLinked() {
+    return mLinkedId.size() > 0;
+  }
 
   ///Remove the actor defined by its type and index (example: 3rd contour)
   void RemoveActor(const std::string& actor_type, int overlay_index);
@@ -173,18 +259,23 @@ class vvSlicerManager : public QObject {
   void Reload();
   void ReloadOverlay();
   void ReloadFusion();
+  void ReloadFusionSequence();
   void ReloadVF();
 
   void Activated();
   void Picked();
   void UpdateInfoOnCursorPosition(int slicer);
+  void EmitMousePositionUpdated(int slicer);
+  void EmitKeyPressed(std::string keyPress);
   void UpdateWindowLevel();
   void UpdateSlice(int slicer);
   void UpdateTSlice(int slicer);
   void UpdateSliceRange(int slicer);
+  void SetSlicingPreset(SlicingPresetType preset);
 
   vvLandmarks *GetLandmarks();
-  void AddLandmark(float x,float y,float z,float t);
+  void AddNewLandmark(float x,float y,float z,float t);
+  void AddLandmarkProfile(float x,float y,float z,float t);
   
   void NextImage(int slicer);
   void PrevImage(int slicer);
@@ -192,43 +283,66 @@ class vvSlicerManager : public QObject {
   void VerticalSliderHasChanged(int slicer, int slice);
   double GetScalarComponentAsDouble(vtkImageData *image, double X, double Y, double Z, int component=0);
 
+public slots:
+  void AddLandmark(float x,float y,float z,float t);
+  void UpdateLandmark();
+
 signals :
+  void callAddLandmark(float x,float y,float z,float t);
   void currentImageChanged(std::string id);
   void currentPickedImageChanged(std::string id);
   void UpdatePosition(int visibility,double x, double y, double z, double X, double Y, double Z, double value);
   void UpdateVector(int display, double x, double y, double z, double value);
   void UpdateOverlay(int display, double valueOver, double valueRef);
   void UpdateFusion(int display, double valueFus);
-  void UpdateWindows(int slicer, int view, int slice);
+  void UpdateFusionSequence(int fusionSequenceFrameIndex, bool fusionSequenceSpatialSyncFlag, unsigned int fusionSequenceNbFrames);
+  void MousePositionUpdatedSignal(int slicer);
+  void KeyPressedSignal(std::string KeyPressed);
+  void UpdateOrientation(int slicer, int orientation);
   void UpdateSlice(int slicer, int slice);
-  void UpdateTSlice(int slicer, int slice);
+  void UpdateTSlice(int slicer, int slice, int code);
   void UpdateSliceRange(int slice, int min, int max, int tmin, int tmax);
-  void WindowLevelChanged(double window, double level, int preset, int colormap);
+  void WindowLevelChanged();
   void UpdateLinkManager(std::string, int slicer, double x, double y, double z, int temps);
-  void UpdateLinkedNavigation(std::string, vvSlicerManager*);
+  void UpdateLinkedNavigation(std::string, vvSlicerManager*, vvSlicer*);
   void LandmarkAdded();
   void ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset);
   void LeftButtonReleaseSignal(int slicer);
   void AVerticalSliderHasChanged(int slicer, int slice);
 
 protected:
-  std::vector<vvSlicer*> mSlicers;
-  vvImageReader* mReader;
-  vvImageReader* mOverlayReader;
-  vvImageReader* mFusionReader;
+  std::vector< vtkSmartPointer<vvSlicer> > mSlicers;
+  int mSelectedSlicer;
+  vvImageReader::Pointer mReader;
+  vvImageReader::Pointer mOverlayReader;
+  vvImageReader::Pointer mFusionReader;
+  vvImageReader::Pointer mFusionSequenceReader;
+  vvImageReader::Pointer mVectorReader;
   vvImage::Pointer mImage;
   vvImage::Pointer mVF;
-  vvImageReader* mVectorReader;
   int mColorMap;
   int mOverlayColor;
 
   int mFusionOpacity;
+  int mFusionThresOpacity;
   int mFusionColorMap;
   double mFusionWindow;
   double mFusionLevel;
-
+  bool mFusionShowLegend;
+
+  //Fusion of sequences related data
+  int mFusionSequenceInvolvementCode; //-1: not involved, 0: main sequence(CT), 1: secondary sequence (US)
+  int mFusionSequenceIndexLinkedManager; //index of the other sequence involved in the visualization
+  int mFusionSequenceFrameIndex; //temporal index of the current image in the sequence (<->TSlice)
+  unsigned int mFusionSequenceNbFrames; //number of frames in the temporal sequence
+  bool mFusionSequenceSpatialSyncFlag, mFusionSequenceTemporalSyncFlag; //flags indicating whether the spatial/temporal synchronization are actives
+  vtkSmartPointer<vtkMatrix4x4> mFusionSequenceMainTransform;
+  std::vector< vtkSmartPointer<vtkMatrix4x4> > mFusionSequenceListInitialTransformMatrices;
+  std::vector<unsigned> mFusionSequenceCorrespondances;
+  
   int mPreset;
-  LoadedImageType mType;
+  SlicingPresetType mSlicingPreset;
+  vvImageReader::LoadedImageType mType;
   std::string mVFComponent;
   std::string mOverlayComponent;
   std::string mFusionComponent;