X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=vv%2FvvToolRigidReg.cxx;h=26c53ca92aa3ae241d0735e8b3b6b00d32fb0149;hb=f57924a2649534451ac1ae5a2bdc63e0b6a0092d;hp=a307971d2de4d2d614cbbfd3cb3357c2ee14685f;hpb=711d2abc875d5e997b5cdbf762ca5c7c67df6719;p=clitk.git diff --git a/vv/vvToolRigidReg.cxx b/vv/vvToolRigidReg.cxx index a307971..26c53ca 100644 --- a/vv/vvToolRigidReg.cxx +++ b/vv/vvToolRigidReg.cxx @@ -15,21 +15,28 @@ - BSD See included LICENSE.txt file - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html ======================================================================-====*/ + +// vv #include "vvToolRigidReg.h" -#include -#include -#include +#include "vvImageReader.h" +#include "vvSlicer.h" + +// vtk #include #include #include -#include "vvImage.h" -#include "vvSlicer.h" -#include -#include + +// clitk +#include "clitkTransformUtilities.h" +#include "clitkAffineRegistrationGenericFilter.h" +// qt #include -#include #include #include +#include +#include + + //------------------------------------------------------------------------------ // Create the tool and automagically (I like this word) insert it in // the main window menu. @@ -44,14 +51,28 @@ vvToolRigidReg::vvToolRigidReg(vvMainWindowBase * parent, Qt::WindowFlags f): { // GUI Initialization Ui_vvToolRigidReg::setupUi(mToolWidget); - QSize qsize; - qsize.setHeight(170); - qsize.setWidth(650); - textEdit->setFixedSize(qsize); - + // QSize qsize; +// qsize.setHeight(470); +// qsize.setWidth(850); +// mToolWidget->setFixedSize(qsize); // Set how many inputs are needed for this tool - AddInputSelector("Select the Reference Image"); - AddInputSelector("Select the Target Image"); + cb_transform->hide(); + cb_interpolator->hide(); + cb_optimizer->hide(); + cb_metric->hide(); + cb_selectoutput->hide(); + cb_presets->hide(); + translabel->hide(); + metriclabel->hide(); + outputlabel->hide(); + optimlabel->hide(); + interpollabel->hide(); + presetlabel->hide(); + + + // Set how many inputs are needed for this tool + AddInputSelector("Select moving image"); + AddInputSelector("Select fixed image"); } //------------------------------------------------------------------------------ @@ -63,8 +84,9 @@ vvToolRigidReg::~vvToolRigidReg() //------------------------------------------------------------------------------ bool vvToolRigidReg::close() -{ - +{ + ResetTransform(); + RemoveOverlay(); return vvToolWidgetBase::close(); } //------------------------------------------------------------------------------ @@ -72,105 +94,763 @@ bool vvToolRigidReg::close() //------------------------------------------------------------------------------ void vvToolRigidReg::reject() { - ResetTransform(); + return vvToolWidgetBase::reject(); } //------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ +void vvToolRigidReg::GetArgsInfoFromGUI() +{ + QFont font=QFont("Courier",10); + tab2textedit->setTextColor(QColor(255,0,0)); + tab2textedit->setCurrentFont(font); + tab2textedit->update(); + + QString file = QFileDialog::getOpenFileName( + this, + "Locate the Config File", + mMainWindow->GetInputPathName(), + "Text (*.conf *.txt *.rtf *.doc)"); + + if (file.isEmpty()) + return; + + QFile Qfile1(file); + mConfigFile= file.toStdString(); + CmdlineParser(1, 1);//1,1 - override, initialize + cb_transform->setCurrentIndex(mArgsInfo.transform_arg); + cb_interpolator->setCurrentIndex(mArgsInfo.interp_arg); + cb_optimizer->setCurrentIndex(mArgsInfo.optimizer_arg); + cb_metric->setCurrentIndex(mArgsInfo.metric_arg); +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::Presets() +{ + mConfigFile="Presets"; + std::string matrixfilename; +if(cb_presets->currentIndex()==0) +{ + mArgsInfo.reference_arg=new char; + mArgsInfo.reference_given=0; + mArgsInfo.target_arg=new char; + mArgsInfo.target_given=0; + mArgsInfo.output_arg=new char; + mArgsInfo.referenceMask_arg=new char; + mArgsInfo.targetMask_arg=new char; + mArgsInfo.initMatrix_arg=new char; + mArgsInfo.matrix_arg=new char; + mArgsInfo.referenceMask_given=0; + mArgsInfo.reference_given=0; + mArgsInfo.reference_arg=new char; + mArgsInfo.target_given=0; + mArgsInfo.target_arg=new char; + mArgsInfo.output_given=0; + mArgsInfo.output_arg=new char; + mArgsInfo.checker_after_given=0; + mArgsInfo.checker_before_given=0; + mArgsInfo.after_given=0; + mArgsInfo.before_given=0; + mArgsInfo.threads_given=1; + mArgsInfo.threads_arg=3; + mArgsInfo.normalize_flag=0; + mArgsInfo.blur_arg=0.0; + mArgsInfo.referenceMask_arg=new char; + mArgsInfo.targetMask_arg=new char; + mArgsInfo.targetMask_given=0; + mArgsInfo.levels_given=1; + mArgsInfo.levels_arg=2; + mArgsInfo.moment_flag=1; + mArgsInfo.intThreshold_given=0; + mArgsInfo.intThreshold_arg=0.0; + mArgsInfo.transX_arg=0.0; + mArgsInfo.transY_arg=0.0; + mArgsInfo.transZ_arg=0.0; + mArgsInfo.transform_arg=2; + mArgsInfo.gradient_flag=1; + mArgsInfo.interp_given=1; + mArgsInfo.interp_arg=1; + mArgsInfo.interpOrder_given=1; + mArgsInfo.interpOrder_arg=3; + mArgsInfo.interpSF_given=1; + mArgsInfo.interpSF_arg=20;//default + mArgsInfo.metric_given=1; + mArgsInfo.metric_arg=0; + mArgsInfo.samples_arg=1;//default + mArgsInfo.stdDev_arg=0.4; + mArgsInfo.step_arg=2.0; + mArgsInfo.relax_arg=0.7; + mArgsInfo.valueTol_arg=0.01; + mArgsInfo.stepTol_arg=0.1; + mArgsInfo.gradTol_arg=1e-5; + mArgsInfo.lineAcc_arg=0.9; + mArgsInfo.convFactor_arg=1e+12; + mArgsInfo.maxIt_arg=500; + mArgsInfo.maxLineIt_arg=50; + mArgsInfo.maxEval_arg=500; + mArgsInfo.maxCorr_arg=5; + mArgsInfo.selectBound_arg=0; + mArgsInfo.inc_arg=1.2; + mArgsInfo.dec_arg=4; + mArgsInfo.optimizer_arg=1; + mArgsInfo.initMatrix_given=0; + mArgsInfo.initMatrix_arg=new char; + mArgsInfo.tWeight_given=1; + mArgsInfo.tWeight_arg=1.0; + mArgsInfo.rWeight_given=1.0; + mArgsInfo.rWeight_arg=50.0; + mArgsInfo.matrix_given=1; + matrixfilename="/home/bharath/bin/writematrix.txt";//put ur path here for retreiving your matrix + mArgsInfo.matrix_arg=const_cast(matrixfilename.c_str()); + UpdateTextEditor2(); +} +else { + QMessageBox::information(this,"Sorry", "Other Presets are not available for the moment!"); + return; + } +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::UpdateTextEditor2() +{ + + QString str1,str2,str3; + QColor color; + tab2textedit->clear(); + tab2textedit->setAcceptRichText(true); + str2=tab2textedit->toPlainText(); + tab2textedit->setTextColor(QColor(255,0,0)); + str2.append(str3.append("threads="+str1.setNum(mArgsInfo.threads_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("reference="+str1.append(mArgsInfo.reference_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("target="+str1.append(mArgsInfo.target_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("matrix="+str1.append(mArgsInfo.matrix_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("interp="+str1.setNum(mArgsInfo.interp_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("transform="+str1.setNum(mArgsInfo.transform_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("transX="+str1.setNum(mArgsInfo.transX_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("transY="+str1.setNum(mArgsInfo.transY_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("transZ="+str1.setNum(mArgsInfo.transZ_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("metric="+str1.setNum(mArgsInfo.metric_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("samples="+str1.setNum(mArgsInfo.samples_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("intThreshold="+str1.setNum(mArgsInfo.intThreshold_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("stdDev="+str1.setNum(mArgsInfo.stdDev_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("blur="+str1.setNum(mArgsInfo.blur_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("optimizer="+str1.setNum(mArgsInfo.optimizer_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("step="+str1.setNum(mArgsInfo.step_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("relax="+str1.setNum(mArgsInfo.relax_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("valueTol="+str1.setNum(mArgsInfo.valueTol_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("stepTol="+str1.setNum(mArgsInfo.stepTol_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("gradTol="+str1.setNum(mArgsInfo.gradTol_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("lineAcc="+str1.setNum(mArgsInfo.lineAcc_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + str2=tab2textedit->toPlainText(); + str2.append(str3.append("convFactor="+str1.setNum(mArgsInfo.convFactor_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("maxIt="+str1.setNum(mArgsInfo.maxIt_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("maxLineIt="+str1.setNum(mArgsInfo.maxLineIt_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("maxEval="+str1.setNum(mArgsInfo.maxEval_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("maxCorr="+str1.setNum(mArgsInfo.maxCorr_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("selectBound="+str1.setNum(mArgsInfo.selectBound_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("rWeight="+str1.setNum(mArgsInfo.rWeight_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("tWeight="+str1.setNum(mArgsInfo.tWeight_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("levels="+str1.setNum(mArgsInfo.levels_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("inc="+str1.setNum(mArgsInfo.inc_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); + + str2=tab2textedit->toPlainText(); + str2.append(str3.append("dec="+str1.setNum(mArgsInfo.dec_arg))); + tab2textedit->setText(str2); + str3.clear(); + str1.clear(); + + str2=tab2textedit->toPlainText(); + str2.append("\n"); + tab2textedit->setText(str2); +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::TransformSelect() +{ + if(!mConfigFile.empty()){ + mArgsInfo.transform_arg=cb_transform->currentIndex(); + UpdateTextEditor2(); + } + else{ + QMessageBox::information(this,"Warning","Load the Config File First!.."); + } +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::CmdlineParser(int override, int initialize) +{ + //0 opened, 1 not opened fine + int opened=cmdline_parser_clitkAffineRegistration_configfile(const_cast(mConfigFile.c_str()),&mArgsInfo,override,initialize,1); + DD(opened); + mArgsInfo.gradient_flag=1; + QString str; + //Read the transformation parameters from the path in the config file(mArgsInfo.matrix_arg) and display it on the TextBox 2 + ifstream readfile; + std::vector Qstr; + + if(!opened){ + readfile.open(mConfigFile.c_str()); + } + else{ + QMessageBox::information(this,"Warning","Load the Config File First.."); + } + if (readfile.is_open()) + { + while (!readfile.eof()) + { + readfile >> mConfigFile; + Qstr.push_back(QString(mConfigFile.c_str())); + } + readfile.close(); + } + else { + QMessageBox::information(this,"Warning","Cannot Open File!"); + return; + } + for(unsigned int i=0;itoPlainText(); + str.append(Qstr.at(i)); + tab2textedit->setText(str); + str.append("\n"); + tab2textedit->setText(str); + } +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::OptimizerSelect() +{ + if(!mConfigFile.empty()){ + mArgsInfo.optimizer_arg=cb_optimizer->currentIndex(); + UpdateTextEditor2(); + } + else{ + QMessageBox::information(this,"Warning","Load the Config File First!.."); + } +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::InterpolatorSelect() +{ + if(!mConfigFile.empty()){ + mArgsInfo.interp_arg=cb_interpolator->currentIndex(); + UpdateTextEditor2(); + } + else{ + QMessageBox::information(this,"Warning","Load the Config File First!.."); + } +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::MetricSelect() +{ + if(!mConfigFile.empty()){ + mArgsInfo.metric_arg=cb_metric->currentIndex(); + UpdateTextEditor2(); + } + else{ + QMessageBox::information(this,"Warning","Load the Config File First!.."); + } +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::OutputSelect() +{ + std::ostringstream osstream; + if(!mConfigFile.empty()){ + if(cb_selectoutput->currentIndex()==0){ + mArgsInfo.output_given=0; + mArgsInfo.checker_after_given=0; + mArgsInfo.checker_before_given=0; + mArgsInfo.after_given=0; + mArgsInfo.before_given=0; + }//get transformed output image + if(cb_selectoutput->currentIndex()==1){ + mArgsInfo.output_given=0; + mArgsInfo.checker_after_given=1; + mArgsInfo.checker_before_given=0; + mArgsInfo.after_given=0; + mArgsInfo.before_given=0; + }//get checkered image after reg + if(cb_selectoutput->currentIndex()==2){ + mArgsInfo.output_given=0; + mArgsInfo.checker_after_given=0; + mArgsInfo.checker_before_given=1; + mArgsInfo.after_given=0; + mArgsInfo.before_given=0; + }//get checkered image before reg + if(cb_selectoutput->currentIndex()==3){ + mArgsInfo.output_given=0; + mArgsInfo.checker_after_given=0; + mArgsInfo.checker_before_given=0; + mArgsInfo.after_given=1; + mArgsInfo.before_given=0; + }//get difference image after reg + if(cb_selectoutput->currentIndex()==4){ + mArgsInfo.output_given=0; + mArgsInfo.checker_after_given=0; + mArgsInfo.checker_before_given=0; + mArgsInfo.after_given=0; + mArgsInfo.before_given=1; + }//get difference image before reg + } + else{ + QMessageBox::information(this,"Warning","Load the Config File First!.."); + } +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::SaveTextEdit() +{ + DD(mArgsInfo.transform_arg); + QString f1 = QFileDialog::getSaveFileName(this, tr("Save Config File"), + mMainWindow->GetInputPathName(), + tr("Text (*.mat *.txt *.doc *.rtf)")); + QFile file(f1); + if(file.open(QFile::WriteOnly | QFile::Truncate) & !mConfigFile.empty() ){ + QTextStream stream( &file ); + stream << tab2textedit->toPlainText(); + } + else + { + QMessageBox::information(this,"Warning","Nothing to Save!"); + return; + } + tab2textedit->clear(); + DD(mArgsInfo.transform_arg); +} +//------------------------------------------------------------------------------ + //------------------------------------------------------------------------------ void vvToolRigidReg::InputIsSelected(std::vector & l) { //inputs mInput1 = l[0]; mInput2 = l[1]; + UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),textEdit_2); + + for(int i =0;i<4;i++) + { + for(int j=0;j<4;j++) + { + mInitialMatrix[i*4+j]=mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()->GetElement(i,j); + } + } + if(mInput1->GetFileName()==mInput2->GetFileName()) - { + { QMessageBox::information(this, "Warning","Your Reference and Target Images are the same"); - } + } mTwoInputs = true; - SetOverlay(); + SetOverlay(mInput2->GetImage()); mImageSize=mInput1->GetImage()->GetSize(); - SetRotationCenter(); SetSliderRanges(); - - //connect all sigs to slots - connect(resetbutton, SIGNAL(pressed()), this, SLOT(ResetTransform())); - - connect(Xval, SIGNAL(editingFinished()), this, SLOT(SetXvalue())); - connect(Yval, SIGNAL(editingFinished()), this, SLOT(SetYvalue())); - connect(Zval, SIGNAL(editingFinished()), this, SLOT(SetZvalue())); - connect(xtrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateXtranslider())); - - connect(ytrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateYtranslider())); - connect(ztrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateZtranslider())); - - - connect(xrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateXrotslider())); - connect(yrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateYrotslider())); - connect(zrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateZrotslider())); - - - connect(xtrans_sb, SIGNAL(valueChanged(int)), this, SLOT(UpdateXtransb())); - connect(ytrans_sb, SIGNAL(valueChanged(int)), this, SLOT(UpdateYtransb())); - connect(ztrans_sb, SIGNAL(valueChanged(int)), this, SLOT(UpdateZtransb())); - connect(xrot_sb, SIGNAL(valueChanged(int)), this, SLOT(UpdateXrotsb())); - connect(yrot_sb, SIGNAL(valueChanged(int)), this, SLOT(UpdateYrotsb())); - connect(zrot_sb, SIGNAL(valueChanged(int)), this, SLOT(UpdateZrotsb())); + + //connect all sigs to slots + connect(resetbutton, SIGNAL(pressed()), this, SLOT(ResetTransform())); + connect(tab2loadbutton, SIGNAL(pressed()), this, SLOT(GetArgsInfoFromGUI())); + connect(tab2applybutton, SIGNAL(pressed()), this, SLOT(AutoRegister())); + + + connect(Xval, SIGNAL(editingFinished()), this, SLOT(SetXvalue())); + connect(Yval, SIGNAL(editingFinished()), this, SLOT(SetYvalue())); + connect(Zval, SIGNAL(editingFinished()), this, SLOT(SetZvalue())); + + connect(xtrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders())); + connect(ytrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders())); + connect(ztrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders())); + + + connect(xrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders())); + connect(yrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders())); + connect(zrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders())); + + connect(xtrans_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb())); + connect(ytrans_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb())); + connect(ztrans_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb())); + connect(xrot_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb())); + connect(yrot_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb())); + connect(zrot_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb())); + + connect(loadbutton, SIGNAL(pressed()), this, SLOT(LoadFile())); + connect(savebutton, SIGNAL(pressed()), this, SLOT(SaveFile())); + + connect(checkBox_rigid, SIGNAL(clicked(bool)), this, SLOT(CheckRigidReg())); + connect(checkBox_deformable, SIGNAL(clicked(bool)), this, SLOT(CheckDeformableReg())); + + connect(cb_presets, SIGNAL(activated(int)), this, SLOT(Presets())); + connect(cb_transform, SIGNAL(activated(int)), this, SLOT(TransformSelect())); + connect(cb_optimizer, SIGNAL(activated(int)), this, SLOT(OptimizerSelect())); + connect(cb_interpolator, SIGNAL(activated(int)), this, SLOT(InterpolatorSelect())); + connect(cb_metric, SIGNAL(activated(int)), this, SLOT(MetricSelect())); + connect(cb_selectoutput, SIGNAL(activated(int)), this, SLOT(OutputSelect())); + connect(tab2savebutton, SIGNAL(pressed()), this, SLOT(SaveTextEdit())); - - connect(loadbutton, SIGNAL(pressed()), this, SLOT(ReadFile())); - connect(savebutton, SIGNAL(pressed()), this, SLOT(SaveFile())); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ void vvToolRigidReg::apply() { - QMessageBox mb( "Keep Overlay", - "Do you want to keep the overlay on?\n" - "You can switch it off anytime by pressing 'x'", - QMessageBox::Information, - QMessageBox::Yes | QMessageBox::Default, - QMessageBox::No, - QMessageBox::Cancel | QMessageBox::Escape ); - mb.setButtonText( QMessageBox::Yes, "Yes" ); - mb.setButtonText( QMessageBox::No, "No" ); - switch( mb.exec() ) { - case QMessageBox::Yes: - hide(); - break; - case QMessageBox::No: - mInput2->Reload(); - mInput2->Render(); - mInput1->Reload(); - mInput1->Render(); - for(int i=0;iNumberOfSlicers();i++) - { - mInput1->RemoveActor("overlay",0); - mInput1->SetColorMap(0); - mInput1->Render(); - hide(); - } - break; - case QMessageBox::Cancel: - break; - } + RemoveOverlay(); +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::CheckRigidReg() +{ + checkBox_deformable->setChecked(false); + cb_transform->show(); + cb_presets->show(); + cb_metric->show(); + cb_interpolator->show(); + cb_optimizer->show(); + cb_selectoutput->show(); + translabel->show(); + metriclabel->show(); + outputlabel->show(); + optimlabel->show(); + interpollabel->show(); + presetlabel->show(); + +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::CheckDeformableReg() +{ + checkBox_rigid->setChecked(false); + presetlabel->hide(); + cb_transform->show(); + cb_metric->show(); + cb_interpolator->show(); + cb_optimizer->show(); + cb_selectoutput->show(); + cb_presets->hide(); + translabel->show(); + metriclabel->show(); + outputlabel->show(); + optimlabel->show(); + interpollabel->show(); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvToolRigidReg::SetOverlay() +void vvToolRigidReg::SetOverlay(vvImage::Pointer Image) { - for (int i =0; iNumberOfSlicers(); i++) { - mCurrentSlicerManager->GetSlicer(i)->SetOverlay(mInput2->GetImage()); - mCurrentSlicerManager->GetSlicer(i)->SetActorVisibility("overlay",0,true); + for (int i =0; iGetNumberOfSlicers(); i++) { + mCurrentSlicerManager->GetSlicer(i)->SetOverlay(Image); + mCurrentSlicerManager->GetSlicer(i)->SetActorVisibility("overlay",0,true); mCurrentSlicerManager->SetColorMap(); mCurrentSlicerManager->Render(); } } //------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ +void vvToolRigidReg::RemoveOverlay() +{ + for(int i=0;iGetNumberOfSlicers();i++) + { + mInput1->RemoveActor("overlay",0); + mInput1->SetColorMap(0); + mInput1->Render(); + hide(); + } +} +//------------------------------------------------------------------------------ + //------------------------------------------------------------------------------ void vvToolRigidReg::SetXvalue() { @@ -195,8 +875,7 @@ void vvToolRigidReg::SetZvalue() //------------------------------------------------------------------------------ void vvToolRigidReg::SetTransform(double tX, double tY, double tZ, double aX, double aY, double aZ,bool update) { - - vtkSmartPointer transform = mCurrentSlicerManager->GetImage()->GetTransform(); + vtkSmartPointer transform = mInput1->GetImage()->GetTransform(); transform->PostMultiply(); //Rotations if (aX!=0 || aY!=0 || aZ!=0) { @@ -212,50 +891,56 @@ void vvToolRigidReg::SetTransform(double tX, double tY, double tZ, double aX, do } //Translations if (tX!=0||tY!=0||tZ!=0) - transform->Translate(tX*mInput1->GetImage()->GetSpacing()[0],tY*mInput1->GetImage()->GetSpacing()[1],tZ*mInput1->GetImage()->GetSpacing()[2]); - - transform->Update(); - if(update) - { - for (int i=0; iNumberOfSlicers(); i++) { - mCurrentSlicerManager->GetImage()->UpdateReslice(); - mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent(); - mCurrentSlicerManager->GetSlicer(i)->Render(); - } - } + transform->Translate(tX*mInput1->GetImage()->GetSpacing()[0], + tY*mInput1->GetImage()->GetSpacing()[1], + tZ*mInput1->GetImage()->GetSpacing()[2]); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ void vvToolRigidReg::SetTransform(vtkMatrix4x4 *matrix) { - vtkSmartPointer transform =mCurrentSlicerManager->GetImage()->GetTransform(); - transform->SetMatrix(matrix); - transform->PostMultiply(); - transform->Concatenate(matrix); - transform->Update(); -// mCurrentSlicerManager->GetImage()->SetTransform(transform); - - for (int i=0; iNumberOfSlicers(); i++) { - mCurrentSlicerManager->GetImage()->UpdateReslice(); - mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent(); - mCurrentSlicerManager->GetSlicer(i)->Render(); + vtkSmartPointer transform=vtkSmartPointer::New(); + for(int i=0; i<4;i++) + for(int j=0;j<4;j++) + mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()->SetElement(i,j,matrix->GetElement(i,j)); + + Render(); +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::LoadFile() +{ + ReadFile(false); +} +//------------------------------------------------------------------------------ + +//------------------------------------------------------------------------------ +void vvToolRigidReg::Render() +{ + for (int i=0; iGetNumberOfSlicers(); i++) { + mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent(); + mCurrentSlicerManager->GetSlicer(i)->Render(); } } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ - void vvToolRigidReg::UpdateTextEditor(vtkMatrix4x4 *matrix) + void vvToolRigidReg::UpdateTextEditor(vtkMatrix4x4 *matrix,QTextEdit* textEdit) { - QString str1,str2,str3; + QFont font=QFont("Courier",11); + textEdit->setCurrentFont(font); + textEdit->update(); + + QString str1,str2,str3; QColor color; textEdit->clear(); textEdit->setAcceptRichText(true); - str2=textEdit->toPlainText(); - str2.append("Rotation Center(mm): \n"); + str2.append("#Rotation Center(mm): \n#"); textEdit->setText(str2); - + str2=textEdit->toPlainText(); textEdit->setTextColor(QColor(255,0,0)); str2.append(str3.append(Xval->text())); @@ -270,11 +955,11 @@ void vvToolRigidReg::SetTransform(vtkMatrix4x4 *matrix) str2.append(str3.append(Yval->text())); textEdit->setText(str2); str3.clear(); - + str2=textEdit->toPlainText(); str2.append("\t"); textEdit->setText(str2); - + str2=textEdit->toPlainText(); str2.append(str3.append(Zval->text())); @@ -284,288 +969,261 @@ void vvToolRigidReg::SetTransform(vtkMatrix4x4 *matrix) str2=textEdit->toPlainText(); str2.append("\n"); textEdit->setText(str2); - + str2=textEdit->toPlainText(); - str2.append("Transformation Matrix(mm):\n"); + str2.append("#Transformation Matrix(mm):\n"); textEdit->setText(str2); - for(int i=0;i<4;i++) { for(int j=0;j<4;j++) { str2=textEdit->toPlainText(); // str2.append("\t"+str1.setNum(matrix->Element[i][j])); - str2.append(QString("%1\t").arg(str1.setNum(matrix->Element[i][j]),20)); + str2.append(QString("%1\t").arg(str1.setNum(matrix->Element[i][j]),2)); textEdit->setText(str2); } str2=textEdit->toPlainText(); - str2.append("\n"); + str2.append("\n"); textEdit->setText(str2); } //QString str = QFileDialog::getOpenFileName(); textEdit->setTextColor(QColor(255,0,0)); textEdit->setFont(QFont("courrier new",12,4,true)); textEdit->toPlainText().toAscii(); - + str2=textEdit->toPlainText(); textEdit->setText(str2); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvToolRigidReg::UpdateXtransb() -{ - int diff=0; - diff=xtrans_sb->value()-xtrans_slider->value(); - this->SetTransform(diff, 0, 0, 0, 0, 0,true); - xtrans_slider->setValue(xtrans_sb->value()); - UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()); - -} -//------------------------------------------------------------------------------ - -//------------------------------------------------------------------------------ -void vvToolRigidReg::UpdateXtranslider() -{ - int diff=0; - diff=xtrans_slider->value()-xtrans_sb->value(); - this->SetTransform(diff, 0, 0, 0, 0, 0,true); - xtrans_sb->setValue(xtrans_slider->value()); - UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()); -} -//------------------------------------------------------------------------------ - -//------------------------------------------------------------------------------ -void vvToolRigidReg::UpdateYtransb() +void vvToolRigidReg::UpdateTransform_sliders() { - - int diff=0; - diff=ytrans_sb->value()-ytrans_slider->value(); - this->SetTransform(0, diff, 0, 0, 0, 0,true); - ytrans_slider->setValue(ytrans_sb->value()); - UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()); + InitializeSliders(xtrans_slider->value()*mInput1->GetImage()->GetSpacing()[0], + ytrans_slider->value()*mInput1->GetImage()->GetSpacing()[1], + ztrans_slider->value()*mInput1->GetImage()->GetSpacing()[2], + xrot_slider->value(),yrot_slider->value(),zrot_slider->value(),false); + UpdateTransform(true); + Render(); } - //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvToolRigidReg::UpdateYtranslider() +void vvToolRigidReg::UpdateTransform_sb() { - int diff=0; - diff=ytrans_slider->value()-ytrans_sb->value(); - this->SetTransform(0, diff, 0, 0, 0, 0,true); - ytrans_sb->setValue(ytrans_slider->value()); - UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()); + InitializeSliders(xtrans_sb->value(), + ytrans_sb->value(), + ztrans_sb->value(), + xrot_sb->value(),yrot_sb->value(),zrot_sb->value(),false); + UpdateTransform(false); + Render(); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvToolRigidReg::UpdateZtransb() -{ - - int diff=0; - diff=ztrans_sb->value()-ztrans_slider->value(); - this->SetTransform(0, 0, diff, 0, 0, 0,true); - ztrans_slider->setValue(ztrans_sb->value()); - UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()); -} - -//------------------------------------------------------------------------------ - -//------------------------------------------------------------------------------ -void vvToolRigidReg::UpdateZtranslider() -{ - int diff=0; - diff=ztrans_slider->value()-ztrans_sb->value(); - this->SetTransform(0, 0, diff, 0, 0, 0,true); - ztrans_sb->setValue(ztrans_slider->value()); - UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()); -} -//------------------------------------------------------------------------------ - -//------------------------------------------------------------------------------ -void vvToolRigidReg::UpdateXrotsb() -{ - - int diff=0; - diff=xrot_sb->value()-xrot_slider->value(); - this->SetTransform(0, 0, 0, diff, 0, 0,true); - xrot_slider->setValue(xrot_sb->value()); - UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()); -} - -//------------------------------------------------------------------------------ - -//------------------------------------------------------------------------------ -void vvToolRigidReg::UpdateXrotslider() -{ - int diff=0; - diff=xrot_slider->value()-xrot_sb->value(); - this->SetTransform(0, 0, 0, diff, 0, 0,true); - xrot_sb->setValue(xrot_slider->value()); - UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()); +void vvToolRigidReg::AutoRegister() +{ + if (!mCurrentSlicerManager) close(); + + if(!mConfigFile.empty()){ + std::vector inputs; + // Input + inputs.push_back(mInput1->GetImage()); + inputs.push_back(mInput2->GetImage()); + // Check input type + // Main filter + clitk::AffineRegistrationGenericFilter::Pointer filter = + clitk::AffineRegistrationGenericFilter::New(); + filter->SetInputVVImages(inputs); + filter->SetArgsInfo(mArgsInfo); + filter->EnableReadOnDisk(false); + filter->Update(); + std::ostringstream osstream; + vvImage::Pointer output; + output = filter->GetOutputVVImage(); + SetOverlay(output); + + if(!cb_selectoutput->currentIndex()==0){ + std::string outputstring; + output = filter->GetOutputVVImages()[1]; + if(cb_selectoutput->currentIndex()==1){outputstring="Checkered_after_reg";} + if(cb_selectoutput->currentIndex()==2){outputstring="Checkered_before_reg";} + if(cb_selectoutput->currentIndex()==3){outputstring="Diff_after_reg";} + if(cb_selectoutput->currentIndex()==4){outputstring="Diff_before_reg";} + osstream << outputstring << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd"; + AddImage(output,osstream.str()); + filter->DeleteLastOutputImage(); + } + DD(filter->GetOutputVVImages().capacity()); + QApplication::restoreOverrideCursor(); + ReadFile(true); + } + else + { + QMessageBox::information(this, "Warning","Load the Config File First!..."); + return; + } } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvToolRigidReg::UpdateYrotsb() +void vvToolRigidReg::UpdateTransform(bool slider_enabled) { - - int diff=0; - diff=yrot_sb->value()-yrot_slider->value(); - this->SetTransform(0, 0, 0, 0, diff, 0,true); - yrot_slider->setValue(yrot_sb->value()); - UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()); + vtkSmartPointer transform_final=mInput1->GetImage()->GetTransform(); + transform_final->SetMatrix(mInitialMatrix); + transform_final->PostMultiply(); + //Rotations + double x=0, y=0 ,z=0; + x= Xval->text().toDouble(); + y= Yval->text().toDouble(); + z= Zval->text().toDouble(); + transform_final->Translate(-x,-y,-z); + if(slider_enabled){ + transform_final->RotateY(yrot_slider->value()); + transform_final->RotateX(xrot_slider->value()); + transform_final->RotateZ(zrot_slider->value()); + } + else{ + transform_final->RotateY(yrot_sb->value()); + transform_final->RotateX(xrot_sb->value()); + transform_final->RotateZ(zrot_sb->value()); + } + transform_final->Translate(x,y,z); + transform_final->PreMultiply(); + if(slider_enabled){ + transform_final->Translate(xtrans_slider->value()*mInput1->GetImage()->GetSpacing()[0],0,0); + transform_final->Translate(0,ytrans_slider->value()*mInput1->GetImage()->GetSpacing()[1],0); + transform_final->Translate(0,0,ztrans_slider->value()*mInput1->GetImage()->GetSpacing()[2]); + } + else{ + transform_final->Translate(xtrans_sb->value(),0,0); + transform_final->Translate(0,ytrans_sb->value(),0); + transform_final->Translate(0,0,ztrans_sb->value()); + } + transform_final->Update(); + Render(); + UpdateTextEditor(transform_final->GetMatrix(),textEdit); } - //------------------------------------------------------------------------------ -//------------------------------------------------------------------------------ -void vvToolRigidReg::UpdateYrotslider() -{ - int diff=0; - diff=yrot_slider->value()-yrot_sb->value(); - this->SetTransform(0, 0, 0, 0, diff, 0,true); - yrot_sb->setValue(yrot_slider->value()); - UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()); -} -//------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvToolRigidReg::UpdateZrotsb() +void vvToolRigidReg::SaveFile() { + //Write the Transformation Matrix + QString f1 = QFileDialog::getSaveFileName(this, tr("Save Transformation Matrix File"), + mMainWindow->GetInputPathName(), + tr("Text (*.mat *.txt *.doc *.rtf)")); + QFile file1(f1); + std::vector transparameters; + QString line1; - int diff=0; - diff=zrot_sb->value()-zrot_slider->value(); - this->SetTransform(0, 0, 0, 0, 0,diff,true); - zrot_slider->setValue(zrot_sb->value()); - UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()); -} - -//------------------------------------------------------------------------------ - -//------------------------------------------------------------------------------ -void vvToolRigidReg::UpdateZrotslider() -{ - int diff=0; - diff=zrot_slider->value()-zrot_sb->value(); - this->SetTransform(0, 0, 0, 0, 0, diff,true); - zrot_sb->setValue(zrot_slider->value()); - UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()); -} -//------------------------------------------------------------------------------ + for(int i =0;i<4;i++) + for(int j=0;j<4;j++) + transparameters.push_back(line1.setNum(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()->Element[i][j])); -//------------------------------------------------------------------------------ -void vvToolRigidReg::SaveFile() -{ - QString s = QFileDialog::getSaveFileName(this, tr("Save File"), - "/home", - tr("Text (*.txt *.doc *.rtf)")); - QFile file(s); - if (file.open(QFile::WriteOnly | QFile::Truncate)) { - QTextStream out(&file); - out<toPlainText() ; + if (file1.open(QFile::WriteOnly | QFile::Truncate)) { + QTextStream out1(&file1); + for(int i =0;i<4;i++){ + for(int j=0;j<4;j++) { + out1< transform = mCurrentSlicerManager->GetImage()->GetTransform(); - QString s = QFileDialog::getOpenFileName( + if(!matrix_given) + { + //Open File to read the transformation parameters + QString file1 = QFileDialog::getOpenFileName( this, - "Choose a file", - "/home", - "Text (*.txt *.rtf *.doc)"); - if (s.isEmpty()) + "Choose the Transformation Parameters file", + mMainWindow->GetInputPathName(), + "Text (*.mat *.txt *.rtf *.doc)"); + if (file1.isEmpty()) return; - - QFile file(s); - ifstream readfile; - std::string x= s.toStdString(); - std::vector Qstr; - readfile.open(x.c_str()); - if (readfile.is_open()) + QFile Qfile1(file1); + // ifstream readfile; + transfile= file1.toStdString(); + } + else { - while (!readfile.eof()) - { - readfile >> x; - Qstr.push_back(QString(x.c_str())); - } - readfile.close(); + transfile=mArgsInfo.matrix_arg; + DD(transfile); } - else { - cout << "Unable to open file"; - } - //Set the transformation matrix - int index =7; - for(int i=0;i<4;i++) + std::string filename1(transfile); + std::ifstream f1(filename1.c_str()); + if(f1.is_open()) { - for(int j=0;j<4;j++) - { - matrix->Element[i][j]=Qstr.at(index).toDouble(); - index++; - } + f1.close(); + itk::Matrix itkMat = clitk::ReadMatrix3D(transfile); + for(int j=0; j<4; j++) + for(int i=0; i<4; i++) + matrix->SetElement(i,j,rint(itkMat[i][j])); } - transform->SetMatrix(matrix); - // SetTransform(matrix); - double * orientations=new double[3]; - double * translations=new double[3]; + UpdateTextEditor(matrix,textEdit); + transform->SetMatrix(matrix); transform->GetOrientation(orientations); transform->PostMultiply(); - - //Obtain the Rotation Center - Xval->setText(Qstr.at(2)); - Yval->setText(Qstr.at(3)); - Zval->setText(Qstr.at(4)); - + + //Obtain the Rotation Center , set it to origin + Xval->setText(center.setNum(0)); + Yval->setText(center.setNum(0)); + Zval->setText(center.setNum(0)); + //In the Order or Y X Z // - //now postmultiply for the rotations - SetTransform(0,0,0,0,0,-orientations[2],false); - SetTransform(0,0,0,-orientations[0],0,0,false); - SetTransform(0,0,0,0,-orientations[1],0,false); - + //now postmultiply for the rotations + SetTransform(0,0,0,0,0,-rint(orientations[2]),false); + SetTransform(0,0,0,-rint(orientations[0]),0,0,false); + SetTransform(0,0,0,0,-rint(orientations[1]),0,false); + transform->GetPosition(translations); - transform->Identity(); - - /* DD(translations[0]/mInput1->GetImage()->GetSpacing()[0]); + transform->Identity(); + + DD(translations[0]/mInput1->GetImage()->GetSpacing()[0]); DD(translations[1]/mInput1->GetImage()->GetSpacing()[1]); DD(translations[2]/mInput1->GetImage()->GetSpacing()[2]); + DD(mInput1->GetImage()->GetSpacing()[0]); + DD(mInput1->GetImage()->GetSpacing()[1]); + DD(mInput1->GetImage()->GetSpacing()[2]); DD(orientations[0]); DD(orientations[1]); - DD(orientations[2]);*/ - //set the sliders and spin box values - xtrans_slider->setValue(rint(translations[0]/mInput1->GetImage()->GetSpacing()[0])); - UpdateXtranslider(); - ytrans_slider->setValue(rint(translations[1]/mInput1->GetImage()->GetSpacing()[1])); - UpdateYtranslider(); - ztrans_slider->setValue(rint(translations[2]/mInput1->GetImage()->GetSpacing()[2])); - UpdateZtranslider(); - yrot_slider->setValue(rint(orientations[1])); - UpdateYrotslider(); - xrot_slider->setValue(rint(orientations[0])); - UpdateXrotslider(); - zrot_slider->setValue(rint(orientations[2])); - UpdateZrotslider(); + DD(orientations[2]); + //set the sliders and spin box values + InitializeSliders(rint(translations[0]),rint(translations[1]) + ,rint(translations[2]),rint(orientations[0]),rint(orientations[1]),rint(orientations[2]),true); + SetTransform(matrix); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ void vvToolRigidReg::ResetTransform() { - vtkMatrix4x4 *matrix = vtkMatrix4x4::New(); - matrix->Identity(); - mInput1->Reload(); - mInput1->Render(); - mInput2->Reload(); - mInput2->Render(); + vtkSmartPointer transform = mCurrentSlicerManager->GetImage()->GetTransform(); + transform->SetMatrix(mInitialMatrix); + transform->Update(); + + Render(); SetRotationCenter(); SetSliderRanges(); - SetTransform(matrix); - UpdateTextEditor(matrix); + UpdateTextEditor(transform->GetMatrix(),textEdit); } //------------------------------------------------------------------------------ @@ -576,7 +1234,7 @@ void vvToolRigidReg::SetRotationCenter() QString xcord,ycord,zcord; std::vector imageorigin; imageorigin=mInput1->GetImage()->GetOrigin(); - + DD("before bug"); xcord=xcord.setNum(imageorigin[0]+mImageSize[0]*mInput1->GetImage()->GetSpacing()[0]/2, 'g', 3); ycord=ycord.setNum(imageorigin[1]+mImageSize[1]*mInput1->GetImage()->GetSpacing()[1]/2, 'g', 3); zcord=zcord.setNum(imageorigin[2]+mImageSize[2]*mInput1->GetImage()->GetSpacing()[2]/2, 'g', 3); @@ -584,72 +1242,110 @@ void vvToolRigidReg::SetRotationCenter() Xval->setText(xcord); Yval->setText(ycord); Zval->setText(zcord); - InitializeSliders(); + InitializeSliders(0,0,0,0,0,0,true); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvToolRigidReg::InitializeSliders() +void vvToolRigidReg::InitializeSliders(double xtrans,double ytrans, double ztrans, double xrot, double yrot, double zrot,bool sliders) { - xtrans_slider->signalsBlocked(); - ytrans_slider->signalsBlocked(); - ztrans_slider->signalsBlocked(); - xtrans_sb->signalsBlocked(); - ytrans_sb->signalsBlocked(); - ztrans_sb->signalsBlocked(); - xrot_slider->signalsBlocked(); - yrot_slider->signalsBlocked(); - zrot_slider->signalsBlocked(); - xrot_sb->signalsBlocked(); - yrot_sb->signalsBlocked(); - zrot_sb->signalsBlocked(); - - xtrans_sb->setValue(0); - ytrans_sb->setValue(0); - ztrans_sb->setValue(0); - - xtrans_slider->setValue(0); - ytrans_slider->setValue(0); - ztrans_slider->setValue(0); - - xrot_sb->setValue(0); - yrot_sb->setValue(0); - zrot_sb->setValue(0); - xrot_slider->setValue(0); - yrot_slider->setValue(0); - zrot_slider->setValue(0); + xtrans_sb->blockSignals(true); + xtrans_sb->setSingleStep(mInput1->GetImage()->GetSpacing()[0]); + xtrans_sb->setValue(xtrans); + xtrans_sb->blockSignals(false); + ytrans_sb->blockSignals(true); + ytrans_sb->setSingleStep(mInput1->GetImage()->GetSpacing()[1]); + ytrans_sb->setValue(ytrans); + ytrans_sb->blockSignals(false); + ztrans_sb->blockSignals(true); + ztrans_sb->setSingleStep(mInput1->GetImage()->GetSpacing()[2]); + ztrans_sb->setValue(ztrans); + ztrans_sb->blockSignals(false); + + if(sliders){ + xtrans_slider->blockSignals(true); + xtrans_slider->setValue(rint(xtrans/mInput1->GetImage()->GetSpacing()[0])); + xtrans_slider->blockSignals(false); + ytrans_slider->blockSignals(true); + ytrans_slider->setValue(rint(ytrans/mInput1->GetImage()->GetSpacing()[1])); + ytrans_slider->blockSignals(false); + ztrans_slider->blockSignals(true); + ztrans_slider->setValue(rint(ztrans/mInput1->GetImage()->GetSpacing()[2])); + ztrans_slider->blockSignals(false); + } + xrot_sb->blockSignals(true); + xrot_sb->setValue(xrot); + xrot_sb->blockSignals(false); + yrot_sb->blockSignals(true); + yrot_sb->setValue(yrot); + yrot_sb->blockSignals(false); + zrot_sb->blockSignals(true); + zrot_sb->setValue(zrot); + zrot_sb->blockSignals(false); + xrot_slider->blockSignals(true); + xrot_slider->setValue(xrot); + xrot_slider->blockSignals(false); + yrot_slider->blockSignals(true); + yrot_slider->setValue(yrot); + yrot_slider->blockSignals(false); + zrot_slider->blockSignals(true); + zrot_slider->setValue(zrot); + zrot_slider->blockSignals(false); } //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ void vvToolRigidReg::SetSliderRanges() { - xtrans_slider->setMaximum(1000); - xtrans_slider->setMinimum(-1000); - ytrans_slider->setMaximum(1000); - ytrans_slider->setMinimum(-1000); - ztrans_slider->setMaximum(1000); - ztrans_slider->setMinimum(-1000); - - xtrans_sb->setMaximum(1000); - xtrans_sb->setMinimum(-1000); - ytrans_sb->setMaximum(1000); - ytrans_sb->setMinimum(-1000); - ztrans_sb->setMaximum(1000); - ztrans_sb->setMinimum(-1000); - - xrot_slider->setMaximum(360); - xrot_slider->setMinimum(-360); - yrot_slider->setMaximum(360); - yrot_slider->setMinimum(-360); - zrot_slider->setMaximum(360); - zrot_slider->setMinimum(-360); - - xrot_sb->setMaximum(360); - xrot_sb->setMinimum(-360); - yrot_sb->setMaximum(360); - yrot_sb->setMinimum(-360); - zrot_sb->setMaximum(360); - zrot_sb->setMinimum(-360); + xtrans_slider->blockSignals(true); + xtrans_slider->setRange(-2000,2000); + xtrans_slider->blockSignals(false); + + ytrans_slider->blockSignals(true); + ytrans_slider->setRange(-2000,2000); + ytrans_slider->blockSignals(false); + + ztrans_slider->blockSignals(true); + ztrans_slider->setRange(-2000,2000); + ztrans_slider->blockSignals(false); + + xtrans_sb->blockSignals(true); + xtrans_sb->setRange(-2000,2000); + xtrans_sb->setDecimals(3); + xtrans_sb->blockSignals(false); + + ytrans_sb->blockSignals(true); + ytrans_sb->setRange(-2000,2000); + ytrans_sb->setDecimals(3); + ytrans_sb->blockSignals(false); + + ztrans_sb->blockSignals(true); + ztrans_sb->setRange(-2000,2000); + ztrans_sb->setDecimals(3); + ztrans_sb->blockSignals(false); + + xrot_slider->blockSignals(true); + xrot_slider->setRange(-360,360); + xrot_slider->blockSignals(false); + + yrot_slider->blockSignals(true); + yrot_slider->setRange(-360,360); + yrot_slider->blockSignals(false); + + zrot_slider->blockSignals(true); + zrot_slider->setRange(-360,360); + zrot_slider->blockSignals(false); + + xrot_sb->blockSignals(true); + xrot_sb->setRange(-360,360); + xrot_sb->blockSignals(false); + + yrot_sb->blockSignals(true); + yrot_sb->setRange(-360,360); + yrot_sb->blockSignals(false); + + zrot_sb->blockSignals(true); + zrot_sb->setRange(-360,360); + zrot_sb->blockSignals(false); }