X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=vv%2FvvToolStructureSetManager.cxx;h=a169c087cfcea1538a77329cbb0410cb4b9c7ce4;hb=c63cb71d60e75dd3c7297291f6cc662491474438;hp=5fcd2af961197a4c737f9fa0afac9da05e53a3c4;hpb=cb4f548b5df0172cc7fad02345d7eb3d7a4fa3aa;p=clitk.git

diff --git a/vv/vvToolStructureSetManager.cxx b/vv/vvToolStructureSetManager.cxx
index 5fcd2af..a169c08 100644
--- a/vv/vvToolStructureSetManager.cxx
+++ b/vv/vvToolStructureSetManager.cxx
@@ -1,9 +1,9 @@
 /*=========================================================================
   Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
 
-  Authors belong to: 
+  Authors belong to:
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,15 +14,22 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+  ===========================================================================**/
 
+// vv
 #include "vvToolStructureSetManager.h"
 #include "vvImageReader.h"
 #include "vvStructureSetActor.h"
 #include "vvSlicer.h"
 #include "vvROIActor.h"
+
+// Qt
 #include <QFileDialog>
 #include <QMessageBox>
+#include <QColorDialog>
+#include <QAbstractEventDispatcher>
+ 
+// vtk
 #include <vtkLookupTable.h>
 #include <vtkRenderWindow.h>
 
@@ -32,94 +39,142 @@
 ADD_TOOL(vvToolStructureSetManager);
 //------------------------------------------------------------------------------
 
+int vvToolStructureSetManager::m_NumberOfTool = 0;
+std::vector<vvSlicerManager*> vvToolStructureSetManager::mListOfInputs;
+std::map<vvSlicerManager*, vvToolStructureSetManager*> vvToolStructureSetManager::mListOfOpenTool;
+
 //------------------------------------------------------------------------------
-vvToolStructureSetManager::vvToolStructureSetManager(vvMainWindowBase * parent, Qt::WindowFlags f)
-  :vvToolWidgetBase(parent, f), 
-   vvToolBase<vvToolStructureSetManager>(parent), 
-   Ui::vvToolStructureSetManager() {
-  // Setup the UI
+vvToolStructureSetManager::vvToolStructureSetManager(vvMainWindowBase * parent, 
+                                                     Qt::WindowFlags f, 
+                                                     vvSlicerManager * current):
+  vvToolWidgetBase(parent, f), 
+  // if Qt::Widget -> No dialog in this case (in tab) ; PB = "invisible widget on menu" !
+  // if "f" normal widget
+  vvToolBase<vvToolStructureSetManager>(parent),
+  Ui::vvToolStructureSetManager()
+{
   Ui_vvToolStructureSetManager::setupUi(mToolWidget);
+
+  //  this->setFixedWidth(120);
+  m_NumberOfTool++;
+  mCurrentStructureSetActor = 0;
+  connect(mCloseButton, SIGNAL(clicked()), this, SLOT(close()));
+  mCloseButton->setVisible(false);
   mTree->clear();
+  mTree->header()->resizeSection(0, 30);
+  mMainWindowBase->GetTab()->setTabIcon(mTabNumber, GetToolIcon());
   mCurrentStructureSet = NULL;
-  
-  mDefaultLUTColor = vtkLookupTable::New();
-  for(unsigned int i=0; i<mDefaultLUTColor->GetNumberOfTableValues(); i++) {
+  mCurrentStructureSetIndex = -1;
+  mGroupBoxROI->setEnabled(false);
+  mCurrentROIActor = NULL;
+  mIsAllVisibleEnabled = false;
+  mNumberOfVisibleROI = 0;
+  mNumberOfVisibleContourROI = 0;
+  mDefaultLUTColor = vtkSmartPointer<vtkLookupTable>::New();
+  for(int i=0; i<mDefaultLUTColor->GetNumberOfTableValues(); i++) {
     double r = (rand()/(RAND_MAX+1.0));
     double v = (rand()/(RAND_MAX+1.0));
     double b = (rand()/(RAND_MAX+1.0));
-    mDefaultLUTColor->SetTableValue(i, r, v, b); 
+    mDefaultLUTColor->SetTableValue(i, r, v, b);
     //    std::cout << "mDefaultLUTColor->SetTableValue(" << i << ", " << r << ", " << v << ", " << b << ");" << std::endl;
   }
-  #include "vvDefaultLut.h"
+#include "vvDefaultLut.h"
 
   // Add input selector
-  AddInputSelector("Select image");
+  if (current == NULL) {
+    MustOpenDialogWhenCreated = true;
+    AddInputSelector("Select image");
+  }
+  else {
+    MustOpenDialogWhenCreated = false;
+    mMainButtonBox->setEnabled(true);
+    mCurrentSlicerManager = current;
+    mCurrentImage = mCurrentSlicerManager->GetImage();
+    mToolWidget->setEnabled(true);
+    InputIsSelected(mCurrentSlicerManager);
+  }
 }
 //------------------------------------------------------------------------------
 
 
 //------------------------------------------------------------------------------
-vvToolStructureSetManager::~vvToolStructureSetManager() {
-  DD("vvToolStructureSetManager DESTRUCTOR");
+vvToolStructureSetManager::~vvToolStructureSetManager()
+{
+  m_NumberOfTool--;
+  
+  // clearing the list at this point avoids
+  // segfaulting due to events being dispatched
+  // after object destruction
+  mTreeWidgetList.clear();
+  mTree->clearSelection();
+
+  //std::cout << "vvToolStructureSetManager::~vvToolStructureSetManager()" << std::endl;
 }
 //------------------------------------------------------------------------------
 
 
 //------------------------------------------------------------------------------
+// STATIC
 void vvToolStructureSetManager::Initialize() {
-  SetToolName("StructureSetManager");
-  SetToolMenuName("StructureSet");
-  SetToolIconFilename(":/common/icons/ducky.png");
-  SetToolTip("Display Structure Set.");
+  SetToolName("ROIManager_OLD");
+  SetToolMenuName("Display ROI (binary image)");
+  SetToolIconFilename(":/common/icons/tool-roi.png");
+  SetToolTip("Display ROI from a binary image.");
   SetToolExperimental(true);
 }
 //------------------------------------------------------------------------------
 
 
 //------------------------------------------------------------------------------
-void vvToolStructureSetManager::InputIsSelected(vvSlicerManager *m) {
-  // Hide the input selector
-  QList<int> s;
-  s.push_back(0);
-  s.push_back(1);
-  splitter->setSizes(s);
-  // Connect open menus
-  //  connect(mOpenComboBox, SIGNAL(activated(int)), this, SLOT(open(int)));
+void vvToolStructureSetManager::InputIsSelected(vvSlicerManager *m)
+{
+  //std::cout << "vvToolStructureSetManager::InputIsSelected()" << std::endl;
   
-  connect(mOpenBinaryButton, SIGNAL(clicked()), this, SLOT(openBinaryImage()));
-
-  DD(mCurrentImage->GetNumberOfDimensions());
-
-  // Seems that the following is not needed to refresh ...
-  //  connect(m, SIGNAL(LeftButtonReleaseSignal(int)), SLOT(LeftButtonReleaseEvent(int)));
-
-  connect(mTree, SIGNAL(itemSelectionChanged()), this, SLOT(selectedItemChangedInTree()));
-  connect(mCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(visibleROIToggled(bool)));
-
-  //  TODO connect(mOpacitySlider, SIGNAL(valueChanged(int), this, SLOT(opacityChanged(int))));
-}
-//------------------------------------------------------------------------------
+  //int mTabNumber = parent->GetTab()->addTab(this, "");
+  //  this->setFixedWidth(120);
+  //this->setPreferedHeight(441);  
+  // Refuse if 4D
+  if (mCurrentImage->GetNumberOfDimensions() != 3) {
+    QMessageBox::information(this,tr("Sorry only 3D yet"), tr("Sorry only 3D yet"));
+    close();
+    return;
+  }
+  // Hide selector
+  HideInputSelector(); // splitter
+  mToolInputSelectionWidget->hide();
+  mLabelInputInfo->setText(QString("%1").arg(m->GetFileName().c_str()));
 
+  // add to instance
+  // if (!isWindow()) {
+  mListOfInputs.push_back(mCurrentSlicerManager);
+  mListOfOpenTool[mCurrentSlicerManager] = this;
+  // }
 
-//------------------------------------------------------------------------------
-void vvToolStructureSetManager::LeftButtonReleaseEvent(int slicer) {
-  DD("vvToolStructureSetManager::UpdateSlice");
-  //DD(slicer);
-  //DD(view);
-  //DD(slices);
-  for(int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
-    if (i != slicer);
-    mCurrentSlicerManager->GetSlicer(i)->GetRenderWindow()->Render();
-  }
+  // Connect open menus
+  connect(mOpenBinaryButton, SIGNAL(clicked()), this, SLOT(OpenBinaryImage()));
+  connect(mTree, SIGNAL(itemSelectionChanged()), this, SLOT(SelectedItemChangedInTree()));
+  connect(mCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleROIToggled(bool)));
+  connect(mOpacitySlider, SIGNAL(valueChanged(int)), this, SLOT(OpacityChanged(int)));
+  connect(mChangeColorButton, SIGNAL(clicked()), this, SLOT(ChangeColor()));
+  connect(mContourCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleContourROIToggled(bool)));  
+  connect(mChangeContourColorButton, SIGNAL(clicked()), this, SLOT(ChangeContourColor()));
+  connect(mContourWidthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeContourWidth(int)));
+  connect(mDepthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeDepth(int)));
+  connect(mReloadButton, SIGNAL(clicked()), this, SLOT(ReloadCurrentROI()));
+  connect(mCheckBoxShowAll, SIGNAL(stateChanged(int)), this, SLOT(AllVisibleROIToggled(int)));
+  connect(mContourCheckBoxShowAll, SIGNAL(toggled(bool)), this, SLOT(AllVisibleContourROIToggled(bool)));
+
+  // Browse to load image
+  if (MustOpenDialogWhenCreated)
+    OpenBinaryImage();
 }
 //------------------------------------------------------------------------------
 
 
 //------------------------------------------------------------------------------
-void vvToolStructureSetManager::open(int type) {
-  DD(type);
+void vvToolStructureSetManager::Open(int type) {
   switch (type) {
-  case 0: openBinaryImage(); return; // Open binary image;
+  case 0: OpenBinaryImage(); return; // Open binary image;
   case 1: DD("TODO"); return; // Open DICOM RT
   case 2: DD("TODO"); return; // Open mesh
   default: std::cerr << "Error ????" << std::endl; exit(0);
@@ -129,63 +184,56 @@ void vvToolStructureSetManager::open(int type) {
 
 
 //------------------------------------------------------------------------------
-void vvToolStructureSetManager::addRoiInTreeWidget(clitk::DicomRT_ROI * roi, QTreeWidgetItem * ww) {
-  QTreeWidgetItem * w = new QTreeWidgetItem(ww);
+void vvToolStructureSetManager::AddRoiInTreeWidget(clitk::DicomRT_ROI * roi, QTreeWidget * ww) {
+  mTreeWidgetList.push_back(QSharedPointer<QTreeWidgetItem>(new QTreeWidgetItem(ww)));
+  QTreeWidgetItem * w = mTreeWidgetList.back().data();
   w->setText(0, QString("%1").arg(roi->GetROINumber()));
   w->setText(1, QString("%1").arg(roi->GetName().c_str()));
+  vvROIActor * actor = mStructureSetActorsList[0]->GetROIActor(roi->GetROINumber());  
+  w->setText(3, QString("%1").arg(actor->GetDepth()));  
   QBrush brush(QColor(roi->GetDisplayColor()[0]*255, roi->GetDisplayColor()[1]*255, roi->GetDisplayColor()[2]*255));
   brush.setStyle(Qt::SolidPattern);
-  for(int i=0; i<w->columnCount (); i++) {
-    w->setBackground(i, brush);
-  }
+  w->setBackground(2, brush);
   mMapROIToTreeWidget[roi] = w;
   mMapTreeWidgetToROI[w] = roi;
-  // Connect ROI TreeWidget
-  // TODO
+  mTree->resizeColumnToContents(0);
+  mTree->resizeColumnToContents(1);
 }
 //------------------------------------------------------------------------------
 
 
 //------------------------------------------------------------------------------
-void vvToolStructureSetManager::updateStructureSetInTreeWidget(int index, clitk::DicomRT_StructureSet * s) {
-  QTreeWidgetItem * ss;
-  if (mMapStructureSetIndexToTreeWidget.find(index) == mMapStructureSetIndexToTreeWidget.end()) {
-    // Main row item
-    ss = new QTreeWidgetItem(mTree);
-    //  ss->setFlags(Qt::ItemIsSelectable|Qt::ItemIsUserCheckable|Qt::ItemIsEnabled|Qt::ItemIsTristate);
-    ss->setText(0, QString("S%1").arg(index));
-    ss->setText(1, QString("%1").arg(s->GetLabel().c_str()));
-    // Insert in list
-    mMapStructureSetIndexToTreeWidget[index] = ss;
-    
-    // Connect Structure TreeWidget
-    // TODO
-  }
-  else ss = mMapStructureSetIndexToTreeWidget[index];
-
+void vvToolStructureSetManager::UpdateStructureSetInTreeWidget(int index, clitk::DicomRT_StructureSet * s) {
   // Insert ROI
-  const std::vector<clitk::DicomRT_ROI*> & rois = s->GetListOfROI();
+  /*
+  const std::vector<clitk::DicomRT_ROI::Pointer> & rois = s->GetListOfROI();
   for(unsigned int i=0; i<rois.size(); i++) {
     if (mMapROIToTreeWidget.find(rois[i]) == mMapROIToTreeWidget.end())
-      addRoiInTreeWidget(rois[i], ss);
+      AddRoiInTreeWidget(rois[i], mTree); // replace mTree with ss if several SS
+  }
+  */
+  clitk::DicomRT_StructureSet::ROIConstIteratorType iter;
+  for(iter = s->GetROIs().begin(); iter != s->GetROIs().end(); iter++) {
+    clitk::DicomRT_ROI::Pointer roi = iter->second;
+    if (mMapROIToTreeWidget.find(roi) == mMapROIToTreeWidget.end())
+      AddRoiInTreeWidget(roi, mTree); // replace mTree with ss if several SS
   }
 }
 //------------------------------------------------------------------------------
 
 
 //------------------------------------------------------------------------------
-int vvToolStructureSetManager::addStructureSet(clitk::DicomRT_StructureSet * mStructureSet) {
-
+int vvToolStructureSetManager::AddStructureSet(clitk::DicomRT_StructureSet * mStructureSet) {
   // Create actor for this SS
-  vvStructureSetActor * mStructureSetActor = new vvStructureSetActor;
+
+  QSharedPointer<vvStructureSetActor> mStructureSetActor(new vvStructureSetActor);
+  
   mStructureSetActor->SetStructureSet(mStructureSet);
   mStructureSetActor->SetSlicerManager(mCurrentSlicerManager);
-
   // Insert in lists and get index
   mStructureSetsList.push_back(mStructureSet);
   mStructureSetActorsList.push_back(mStructureSetActor);
   int index = mStructureSetsList.size()-1;
-
   // Return index
   return index;
 }
@@ -193,120 +241,177 @@ int vvToolStructureSetManager::addStructureSet(clitk::DicomRT_StructureSet * mSt
 
 
 //------------------------------------------------------------------------------
-void vvToolStructureSetManager::openBinaryImage() {
-  DD("openBinaryImage");
-  // Select current StructureSet (or create)
+void vvToolStructureSetManager::OpenBinaryImage() 
+{
   int index;
-  DD(mCurrentStructureSetIndex);
   if (mCurrentStructureSet == NULL) {
     if (mStructureSetsList.size() == 0) { // Create a default SS
-      clitk::DicomRT_StructureSet * mStructureSet = new clitk::DicomRT_StructureSet;
-      index = addStructureSet(mStructureSet);
-      DD(index);
+      clitk::DicomRT_StructureSet::Pointer mStructureSet = clitk::DicomRT_StructureSet::New();
+      index = AddStructureSet(mStructureSet);
     }
     else { // Get first SS
       index = 0;
     }
-  }
-  else {
+  } else {
     index = mCurrentStructureSetIndex;
   }
-  DD(index);
-  // TODO -> SET THIS SS AS CURRENT
   mCurrentStructureSet = mStructureSetsList[index];
-  mCurrentStructureSetActor = mStructureSetActorsList[index];
+  mCurrentStructureSetActor = mStructureSetActorsList[index].data();
   mCurrentStructureSetIndex = index;
-  DD(mCurrentStructureSetIndex);
-  DD(mCurrentStructureSet->GetName());
-
   // Open images
-  QString Extensions = "Images files ( *.mhd *.hdr *.his)";
+  QString Extensions = "Images files ( *.mha *.mhd *.hdr *.his)";
   Extensions += ";;All Files (*)";
-  QStringList filename = 
+  QStringList filename =
     QFileDialog::getOpenFileNames(this,tr("Open binary image"),
-				 mMainWindowBase->GetInputPathName(),Extensions);
+				  mMainWindowBase->GetInputPathName(),Extensions);
   if (filename.size() == 0) return;
-
-  std::vector<int> mLoadedROIIndex;
+  mLoadedROIIndex.clear();
   for(int i=0; i<filename.size(); i++) {
-    DD(filename[i].toStdString());
-
     // Open Image
-    //init the progress events
     QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
-    vvImageReader * mReader = new vvImageReader;
+    vvImageReader::Pointer reader = vvImageReader::New();
     std::vector<std::string> filenames;
     filenames.push_back(filename[i].toStdString());
-    mReader->SetInputFilenames(filenames);
-    mReader->Update(IMAGE);
+    reader->SetInputFilenames(filenames);
+    reader->Update(vvImageReader::IMAGE);
     QApplication::restoreOverrideCursor();
-    
-    if (mReader->GetLastError().size() != 0) {
+
+    if (reader->GetLastError().size() != 0) {
       std::cerr << "Error while reading " << filename[i].toStdString() << std::endl;
       QString error = "Cannot open file \n";
-      error += mReader->GetLastError().c_str();
+      error += reader->GetLastError().c_str();
       QMessageBox::information(this,tr("Reading problem"),error);
-      delete mReader;
       return;
     }
-    vvImage::Pointer binaryImage = mReader->GetOutput();
-    //  delete mReader;
-
-    // Check Dimension
-    int dim = mCurrentImage->GetNumberOfDimensions();
-    DD(dim);
-    int bin_dim = binaryImage->GetNumberOfDimensions();
-    DD(bin_dim);
-    if (dim < bin_dim) {  ////////// TO CHANGE FOR 3D/4D
-      std::ostringstream os;
-      os << "Error. Loaded binary image is " << bin_dim 
-	 << "D while selected image is " << dim << "D" << std::endl;
-      QMessageBox::information(this,tr("Reading problem"),os.str().c_str());
-      return;
-    }
-    
-    // Add a new roi to the structure
-    int n = mCurrentStructureSet->AddBinaryImageAsNewROI(binaryImage, filename[i].toStdString());
-    //DD(n);
-    mLoadedROIIndex.push_back(n);
-
-    mCurrentStructureSet->GetROI(n)->SetBackgroundValueLabelImage(mBackgroundValueSpinBox->value());
-    
-    // Change color NEED DEFAULT COLOR LIST
-    DD(mDefaultLUTColor->GetNumberOfTableValues ());
-    if (n<mDefaultLUTColor->GetNumberOfTableValues ()) {
-      double * color = mDefaultLUTColor->GetTableValue(n % mDefaultLUTColor->GetNumberOfTableValues ());
-      DD(color[0]);
-      DD(color[1]);
-      DD(color[2]);
-      mCurrentStructureSet->GetROI(n)->SetDisplayColor(color[0], color[1], color[2]);
-    }
-    
-    // Add a new roi actor
-    mCurrentStructureSetActor->CreateNewROIActor(n);
-  } // end loop on n selected filenames
+    vvImage::Pointer binaryImage = reader->GetOutput();
+    AddImage(binaryImage, filename[i].toStdString(), mBackgroundValueSpinBox->value());
+    mOpenedBinaryImage.push_back(binaryImage);
+  }
 
+  UpdateImage();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolStructureSetManager::UpdateImage() 
+{
   // Update the TreeWidget
-  updateStructureSetInTreeWidget(index, mCurrentStructureSet);
-  
+  UpdateStructureSetInTreeWidget(mCurrentStructureSetIndex, mCurrentStructureSet);
   // Render loaded ROIs (the first is sufficient)
   for(unsigned int i=0; i<mLoadedROIIndex.size(); i++) {
     mCurrentStructureSetActor->GetROIActor(mLoadedROIIndex[i])->Update();
   }
-  for(int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
-    mCurrentSlicerManager->GetSlicer(i)->Render(); 
+  for(int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
+    mCurrentSlicerManager->GetSlicer(i)->Render();
+  }  
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolStructureSetManager::AddImage(vvImage * binaryImage, std::string filename, 
+                                         double BG, bool m_modeBG) 
+{
+  // Check current structure set
+  int index;
+  if (mCurrentStructureSet == NULL) {
+    if (mStructureSetsList.size() == 0) { // Create a default SS
+      clitk::DicomRT_StructureSet::Pointer mStructureSet = clitk::DicomRT_StructureSet::New();
+      index = AddStructureSet(mStructureSet);
+    }
+    else { // Get first SS
+      index = 0;
+    }
+  } else {
+    index = mCurrentStructureSetIndex;
+  }
+  mCurrentStructureSet = mStructureSetsList[index];
+  mCurrentStructureSetActor = mStructureSetActorsList[index].data();
+  mCurrentStructureSetIndex = index;
+
+  // Check Dimension
+  int dim = mCurrentImage->GetNumberOfDimensions();
+  int bin_dim = binaryImage->GetNumberOfDimensions();
+  if (dim < bin_dim) {  ////////// TO CHANGE FOR 3D/4D
+    std::ostringstream os;
+    os << "Error. Loaded binary image is " << bin_dim
+       << "D while selected image is " << dim << "D" << std::endl;
+    QMessageBox::information(this,tr("Reading problem"),os.str().c_str());
+    return;
+  }
+  
+  // Add a new roi to the structure
+  int n = mCurrentStructureSet->AddBinaryImageAsNewROI(binaryImage, filename);
+  mLoadedROIIndex.push_back(n);
+  if (m_modeBG) 
+    mCurrentStructureSet->GetROIFromROINumber(n)->SetBackgroundValueLabelImage(BG);
+  else 
+    mCurrentStructureSet->GetROIFromROINumber(n)->SetForegroundValueLabelImage(BG);
+  
+  // Change color
+  if (n<mDefaultLUTColor->GetNumberOfTableValues ()) {
+    double * color = mDefaultLUTColor->GetTableValue(n % mDefaultLUTColor->GetNumberOfTableValues ());
+    mCurrentStructureSet->GetROIFromROINumber(n)->SetDisplayColor(color[0], color[1], color[2]);
   }
+  
+  // Add a new roi actor
+  mCurrentStructureSetActor->CreateNewROIActor(n, m_modeBG);
+  
+  // CheckBox for "All"
+  if (mCurrentStructureSetActor->GetROIActor(n)->IsVisible())
+    mNumberOfVisibleROI++;
+  if (mCurrentStructureSetActor->GetROIActor(n)->IsContourVisible())
+    mNumberOfVisibleContourROI++;
+  UpdateAllROIStatus();
 }
 //------------------------------------------------------------------------------
 
 
 //------------------------------------------------------------------------------
-void vvToolStructureSetManager::apply() {
+void vvToolStructureSetManager::apply() 
+{
   close();
 }
 //------------------------------------------------------------------------------
 
 
+//------------------------------------------------------------------------------
+bool vvToolStructureSetManager::close()
+{
+  //std::cout << "vvToolStructureSetManager::close()" << std::endl;
+
+  return vvToolWidgetBase::close();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolStructureSetManager::closeEvent(QCloseEvent *event) 
+{
+  //std::cout << "vvToolStructureSetManager::closeEvent()" << std::endl;
+
+  std::vector<vvSlicerManager*>::iterator iter = std::find(mListOfInputs.begin(), mListOfInputs.end(), mCurrentSlicerManager);
+  if (iter != mListOfInputs.end()) mListOfInputs.erase(iter);
+  
+  //  DD("how delete mListOfOpenTool ???");
+  mListOfOpenTool.erase(mCurrentSlicerManager);
+
+  mCheckBoxShowAll->setCheckState(Qt::Unchecked);
+  mContourCheckBoxShowAll->setCheckState(Qt::Unchecked);
+  if (mCurrentSlicerManager != 0)
+    mCurrentSlicerManager->Render();
+
+  if (!isWindow()) {
+    if (m_NumberOfTool == 1) {
+      mMainWindow->GetTab()->removeTab(mTabNumber);
+    }
+  } 
+
+  event->accept();
+}
+//------------------------------------------------------------------------------
+
 
 //------------------------------------------------------------------------------
 // CURRENT ROI INTERACTION
@@ -314,58 +419,269 @@ void vvToolStructureSetManager::apply() {
 
 
 //------------------------------------------------------------------------------
-void vvToolStructureSetManager::selectedItemChangedInTree() {
-  DD("selectedItemChangedInTree");
+void vvToolStructureSetManager::SelectedItemChangedInTree() {
+  
+  // Search which roi is selected
   QList<QTreeWidgetItem *> l = mTree->selectedItems();
-  DD(l.size());
+  if (l.size() == 0) {
+    mCurrentROIActor = NULL;
+    mCurrentROI = NULL;
+    mGroupBoxROI->setEnabled(false);
+    return;
+  }
   QTreeWidgetItem * w = l[0];
-  if (mMapTreeWidgetToROI.find(w) == mMapTreeWidgetToROI.end()) return; // Search for SS (first)
+  //std::cout << "selected item -> " << w->text(1).toStdString() << std::endl;
+  //std::cout << "m_NumberOfTool -> " << m_NumberOfTool << std::endl;
+  if (mMapTreeWidgetToROI.find(w) == mMapTreeWidgetToROI.end()) {
+    mCurrentROIActor = NULL;
+    mCurrentROI = NULL;
+    mGroupBoxROI->setEnabled(false);
+    return;
+  }
   clitk::DicomRT_ROI * roi = mMapTreeWidgetToROI[w];
-  DD(roi->GetName());
-  //setCurrentSelectedROI(roi);
-
-  mROInameLabel->setText(roi->GetName().c_str());
-  DD(roi->GetROINumber());
-  DD(mCurrentStructureSetIndex);
+  // Get selected roi actor
   vvROIActor * actor = mStructureSetActorsList[mCurrentStructureSetIndex]->GetROIActor(roi->GetROINumber());
   mCurrentROI = roi;
   mCurrentROIActor = actor;
 
-  DD(actor);
-  DD(actor->IsVisible());
+  // Warning -> avoid unuseful Render here by disconnect slider 
+  // Update GUI
+  disconnect(mTree, SIGNAL(itemSelectionChanged()), this, SLOT(SelectedItemChangedInTree()));
+  disconnect(mCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleROIToggled(bool)));
+  disconnect(mOpacitySlider, SIGNAL(valueChanged(int)), this, SLOT(OpacityChanged(int)));
+  disconnect(mChangeColorButton, SIGNAL(clicked()), this, SLOT(ChangeColor()));
+  disconnect(mContourCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleContourROIToggled(bool)));  
+  disconnect(mChangeContourColorButton, SIGNAL(clicked()), this, SLOT(ChangeContourColor()));
+  disconnect(mContourWidthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeContourWidth(int)));
+  disconnect(mDepthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeDepth(int)));
+
+  mGroupBoxROI->setEnabled(true);
+  mROInameLabel->setText(roi->GetName().c_str());
   mCheckBoxShow->setChecked(actor->IsVisible());
+  mContourCheckBoxShow->setChecked(actor->IsContourVisible());
+  mContourWidthSpinBox->setValue(actor->GetContourWidth());
+  mDepthSpinBox->setValue(actor->GetDepth());
+  w->setText(3, QString("%1").arg(actor->GetDepth()));
+  mOpacitySlider->setValue((int)lrint(actor->GetOpacity()*100));
+  mOpacitySpinBox->setValue((int)lrint(actor->GetOpacity()*100));
+
+  connect(mTree, SIGNAL(itemSelectionChanged()), this, SLOT(SelectedItemChangedInTree()));
+  connect(mCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleROIToggled(bool)));
+  connect(mOpacitySlider, SIGNAL(valueChanged(int)), this, SLOT(OpacityChanged(int)));
+  connect(mChangeColorButton, SIGNAL(clicked()), this, SLOT(ChangeColor()));
+  connect(mContourCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleContourROIToggled(bool)));  
+  connect(mChangeContourColorButton, SIGNAL(clicked()), this, SLOT(ChangeContourColor()));
+  connect(mContourWidthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeContourWidth(int)));
+  connect(mDepthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeDepth(int)));
+
+  // is this needed ?
+  //  actor->Update(); 
+  // Final rendering
+  // mCurrentSlicerManager->Render();
+}
+//------------------------------------------------------------------------------
 
-  //actor->SetSelected(true); // remove old selection
 
-  DD("ici");
-}
 //------------------------------------------------------------------------------
+void vvToolStructureSetManager::UpdateAllROIStatus() {
+  int nbVisible = 0;
+  int nb = mCurrentStructureSetActor->GetROIList().size();
+  for(int i=0; i<nb; i++) {
+    if (mCurrentStructureSetActor->GetROIList()[i]->IsVisible()) {
+      nbVisible++;
+    }
+  }
 
+  disconnect(mCheckBoxShowAll, SIGNAL(stateChanged(int)), this, SLOT(AllVisibleROIToggled(int)));  
+  disconnect(mContourCheckBoxShowAll, SIGNAL(toggled(bool)), this, SLOT(AllVisibleContourROIToggled(bool)));
+  if (nbVisible == nb) mCheckBoxShowAll->setCheckState(Qt::Checked);
+  else {
+    if (nbVisible == 0) mCheckBoxShowAll->setCheckState(Qt::Unchecked);
+    else mCheckBoxShowAll->setCheckState(Qt::PartiallyChecked);
+  }
+  connect(mContourCheckBoxShowAll, SIGNAL(toggled(bool)), this, SLOT(AllVisibleContourROIToggled(bool)));
+  connect(mCheckBoxShowAll, SIGNAL(stateChanged(int)), this, SLOT(AllVisibleROIToggled(int)));
+}
+//------------------------------------------------------------------------------
 
 //------------------------------------------------------------------------------
-void vvToolStructureSetManager::visibleROIToggled(bool b) {
-  DD(b);
+void vvToolStructureSetManager::VisibleROIToggled(bool b) {
+  if (mCurrentROIActor == NULL) return;
+  if (b == mCurrentROIActor->IsVisible()) return; // nothing to do
   mCurrentROIActor->SetVisible(b);
-  //mCurrentROIActor->Update();
+  UpdateAllROIStatus();
+  mCurrentSlicerManager->Render(); 
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolStructureSetManager::VisibleContourROIToggled(bool b) {
+  if (mCurrentROIActor == NULL) return;
+  if (mCurrentROIActor->IsContourVisible() == b) return; // nothing to do
+  mCurrentROIActor->SetContourVisible(b);
+  mCurrentROIActor->UpdateColor();
+  mCurrentSlicerManager->Render(); 
 }
 //------------------------------------------------------------------------------
 
 
 //------------------------------------------------------------------------------
-void vvToolStructureSetManager::opacityChanged(int v) {
-  DD(v);
+void vvToolStructureSetManager::OpacityChanged(int v) {
+  if (mCurrentROIActor == NULL) return;
   mCurrentROIActor->SetOpacity((double)v/100.0);
-  mCurrentROIActor->Update();
+  mCurrentROIActor->UpdateColor();
+  mCurrentSlicerManager->Render(); 
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolStructureSetManager::AllVisibleROIToggled(int b) {
+  bool status = false;
+  if ((mCheckBoxShowAll->checkState() == Qt::Checked) ||
+      (mCheckBoxShowAll->checkState() == Qt::PartiallyChecked))  status = true;
+
+  for(int i=0; i<mCurrentStructureSetActor->GetNumberOfROIs(); i++) {
+    mCurrentStructureSetActor->GetROIList()[i]->SetVisible(status);
+  }
+  if (status) mCheckBoxShowAll->setCheckState(Qt::Checked);
+  else  mCheckBoxShowAll->setCheckState(Qt::Unchecked);
+  mCheckBoxShow->setChecked(status);
+  mCurrentSlicerManager->Render(); 
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolStructureSetManager::AllVisibleContourROIToggled(bool b) {
+  bool status = false;
+  if ((mContourCheckBoxShowAll->checkState() == Qt::Checked) ||
+      (mContourCheckBoxShowAll->checkState() == Qt::PartiallyChecked))  status = true;
+  // Update current 
+  for(int i=0; i<mCurrentStructureSetActor->GetNumberOfROIs(); i++) {
+    mCurrentStructureSetActor->GetROIList()[i]->SetContourVisible(status);
+  }
+  // Update current selection
+  if (status) mContourCheckBoxShowAll->setCheckState(Qt::Checked);
+  else  mContourCheckBoxShowAll->setCheckState(Qt::Unchecked);
+  mContourCheckBoxShow->setChecked(status);
+  mCurrentSlicerManager->Render(); 
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolStructureSetManager::ChangeColor() {
+  QColor color;
+  color.setRgbF(mCurrentROIActor->GetROI()->GetDisplayColor()[0],
+                mCurrentROIActor->GetROI()->GetDisplayColor()[1],
+                mCurrentROIActor->GetROI()->GetDisplayColor()[2]);
+  QColor c = QColorDialog::getColor(color, this, "Choose the ROI color");
+  mCurrentROIActor->GetROI()->SetDisplayColor(c.redF(), c.greenF(), c.blueF());
+  mCurrentROIActor->UpdateColor();
+
+  QTreeWidgetItem * w = mMapROIToTreeWidget[mCurrentROI];
+  QBrush brush(QColor(mCurrentROI->GetDisplayColor()[0]*255,
+                      mCurrentROI->GetDisplayColor()[1]*255,
+                      mCurrentROI->GetDisplayColor()[2]*255));
+  brush.setStyle(Qt::SolidPattern);
+  w->setBackground(2, brush);
+  // Render
+  mCurrentSlicerManager->Render();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolStructureSetManager::ChangeContourColor() {
+  QColor color;
+  color.setRgbF(mCurrentROIActor->GetContourColor()[0], 
+		mCurrentROIActor->GetContourColor()[1], 
+		mCurrentROIActor->GetContourColor()[2]);
+  QColor c = QColorDialog::getColor(color, this, "Choose the contour color");
+  mCurrentROIActor->SetContourColor(c.redF(), c.greenF(), c.blueF());
+  mCurrentROIActor->UpdateColor();
+  mCurrentSlicerManager->Render();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolStructureSetManager::ChangeContourWidth(int n) {
+  mCurrentROIActor->SetContourWidth(n);
+  mCurrentROIActor->UpdateColor();
+  mCurrentSlicerManager->Render();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolStructureSetManager::ChangeDepth(int n) {
+  mCurrentROIActor->SetDepth(n);
+  mCurrentROIActor->UpdateImage();
+  mCurrentSlicerManager->Render();
+  QList<QTreeWidgetItem *> l = mTree->selectedItems();
+  QTreeWidgetItem * w = l[0];
+  w->setText(3, QString("%1").arg(mCurrentROIActor->GetDepth()));
 }
 //------------------------------------------------------------------------------
 
 
+//------------------------------------------------------------------------------
+void vvToolStructureSetManager::ReloadCurrentROI() {
+  // Reload image
+  vvImageReader::Pointer reader = vvImageReader::New();
+  reader->SetInputFilename(mCurrentROI->GetFilename());
+  reader->Update(vvImageReader::IMAGE);
+  if (reader->GetLastError() != "") {
+    QMessageBox::information(mMainWindowBase, tr("Sorry, error. Could not reload"), reader->GetLastError().c_str());
+    return;
+  }
+  mCurrentROI->GetImage()->GetFirstVTKImageData()->ReleaseData();
+  mCurrentROI->SetImage(reader->GetOutput());
+  
+  // Update visu"
+  mCurrentROIActor->UpdateImage();
+  mCurrentSlicerManager->Render();    
+}
+//------------------------------------------------------------------------------
 
 
 //------------------------------------------------------------------------------
-//void vvToolStructureSetManager::getActorFromROI() {
-//  mStructureSetActorsList[mCurrentStructureSetIndex]->GetROIActor(n);
-//}
+void vvToolStructureSetManager::CheckInputList(std::vector<vvSlicerManager*> & l, int & index) 
+{
+  for(unsigned int i=0; i<l.size(); i++) {
+    std::vector<vvSlicerManager*>::iterator iter = std::find(mListOfInputs.begin(), mListOfInputs.end(), l[i]);
+    if (iter != mListOfInputs.end()) {
+      for(unsigned int j=i;j<l.size(); j++) l[j] = l[j+1];
+      l.pop_back();
+      if (index == (int)i) index = 0;
+      i--;
+    }
+  }
+}
 //------------------------------------------------------------------------------
 
 
+//------------------------------------------------------------------------------
+// STATIC
+vvToolStructureSetManager * vvToolStructureSetManager::AddImage(vvSlicerManager * m, std::string name, vvImage::Pointer image, double BG, bool m_modeBG)
+{
+  // If the tool is open for this vvSlicerManager, use it and return
+  if (mListOfOpenTool[m]) {
+    vvToolStructureSetManager * tool = mListOfOpenTool[m];
+    tool->AddImage(image, name, BG, m_modeBG);
+    tool->UpdateImage();
+    return tool;
+  }
+
+  // If the tool is not open, create it
+  vvToolStructureSetManager * tool = new vvToolStructureSetManager
+    (CREATOR(vvToolStructureSetManager)->GetMainWindow(), Qt::Dialog, m);
+  tool->AddImage(image, name, BG, m_modeBG);
+  tool->UpdateImage();
+  tool->show();
+  return tool;
+}
+//------------------------------------------------------------------------------