new gengetopt versions don't seem to like capital letters

diff --git a/.vimrc b/.vimrc
index 97cf20f9b8ab76ae4ee5a3be96f6c0ded7e15e7b..216453c7c430d734e032406cb46e48321f4f1b41 100644 (file)
--- a/.vimrc
+++ b/.vimrc
@@ -6,5 +6,5 @@ set expandtab
 "set cino={.5s,e-.5s,^-.5s
 set shiftwidth=2
 
 "set cino={.5s,e-.5s,^-.5s
 set shiftwidth=2
 

-set makeprg=${HOME}/workspace/cvs/clitk3/fast_make.sh
+set makeprg=${HOME}/clitk3/fast_make.sh

 set grepprg=clgrep
 set grepprg=clgrep

diff --git a/registration/clitkBLUTDIR.ggo b/registration/clitkBLUTDIR.ggo
index 152c67f397e14ca4612b4b73c927886575944f04..5a98d1d16054effb8cb86d22a486786f92319246 100755 (executable)
--- a/registration/clitkBLUTDIR.ggo
+++ b/registration/clitkBLUTDIR.ggo
@@ -2,8 +2,8 @@
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 11 Jan 2009 10.35 
 
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 11 Jan 2009 10.35 
 

-Package "clitk"
-Version "Register 2 images using optimized BLUT FFD..."
+package "clitk"
+version "Register 2 images using optimized BLUT FFD..."

 
 option "config"                -       "Config file"                   string          no
 
 
 option "config"                -       "Config file"                   string          no
 

diff --git a/registration/clitkBSplineDeformableRegistration.ggo b/registration/clitkBSplineDeformableRegistration.ggo
index 285386069d59923d583401924165a5d7b2a2c9ad..f2fea650452875a205917ee207e9bcd73e7c8ec8 100755 (executable)
--- a/registration/clitkBSplineDeformableRegistration.ggo
+++ b/registration/clitkBSplineDeformableRegistration.ggo
@@ -2,8 +2,8 @@
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 15 July 2008 16.35 
 
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 15 July 2008 16.35 
 

-Package "clitk"
-Version "Register 2 images using optimized ITK FFD (high memory requirements) or BLUT FFD. Both implementations are provided, mainly for debugging purposes.."
+package "clitk"
+version "Register 2 images using optimized ITK FFD (high memory requirements) or BLUT FFD. Both implementations are provided, mainly for debugging purposes.."

 
 option "config"                -       "Config file"                   string          no
 
 
 option "config"                -       "Config file"                   string          no
 

diff --git a/registration/clitkBSplinePyramid.ggo b/registration/clitkBSplinePyramid.ggo
index 823135ee6d2c4e8f933b763ec17c8c175b7673b4..b907900b6f464cd3c180118a33370067e5124187 100644 (file)
--- a/registration/clitkBSplinePyramid.ggo
+++ b/registration/clitkBSplinePyramid.ggo
@@ -1,5 +1,5 @@
 #File clitkBSplinePyramid.ggo
 #File clitkBSplinePyramid.ggo

-Package "clitkBSplinePyramid"
+package "clitkBSplinePyramid"

 version "1.0"
 purpose "Down (or Up) sample with a  factor 2 using Bspline pyramids. BSplineDownsampleImageFilter is BUGGED! See the ITK post of jvdmb@hotmail.com."
 
 version "1.0"
 purpose "Down (or Up) sample with a  factor 2 using Bspline pyramids. BSplineDownsampleImageFilter is BUGGED! See the ITK post of jvdmb@hotmail.com."
 

diff --git a/registration/clitkCalculateTRE.ggo b/registration/clitkCalculateTRE.ggo
index 3a79d161cb665aa974ea084d847036b482d09b53..e6b42f694481561dfbb5bcba2276e22b7b710585 100755 (executable)
--- a/registration/clitkCalculateTRE.ggo
+++ b/registration/clitkCalculateTRE.ggo
@@ -1,5 +1,5 @@
 #File clitkCalculateTRE.ggo
 #File clitkCalculateTRE.ggo

-Package "clitkCalculateTRE"
+package "clitkCalculateTRE"

 version "1.0"
 purpose "Calculate TRE: give a reference point list and 1 or more target point lists. In case of the latter, the number of DVF (or the size of the 4th D) given should match the number of lists. Use --shipFirst to skip the first phase of a 4D DVF. General summarizes for all points (mean, SD, max) in magnitude and par component. Tre and warp gives all values for all points. "
 
 version "1.0"
 purpose "Calculate TRE: give a reference point list and 1 or more target point lists. In case of the latter, the number of DVF (or the size of the 4th D) given should match the number of lists. Use --shipFirst to skip the first phase of a 4D DVF. General summarizes for all points (mean, SD, max) in magnitude and par component. Tre and warp gives all values for all points. "
 

diff --git a/registration/clitkConvertBSplineDeformableTransformToVF.ggo b/registration/clitkConvertBSplineDeformableTransformToVF.ggo
index 1ee3f8fd28c94dab499670d7927078c7770829b0..e20defbedb58cdd3ef048fac15bc5198767f4b5d 100755 (executable)
--- a/registration/clitkConvertBSplineDeformableTransformToVF.ggo
+++ b/registration/clitkConvertBSplineDeformableTransformToVF.ggo
@@ -1,5 +1,5 @@
 #File clitkConvertBSplineDeformableTransformToVF.ggo
 #File clitkConvertBSplineDeformableTransformToVF.ggo

-Package "clitkConvertBSplineDeformableTransformToVF"
+package "clitkConvertBSplineDeformableTransformToVF"

 version "1.0"
 purpose "Convert a BSpline transform to a DVF with given properties"
 
 version "1.0"
 purpose "Convert a BSpline transform to a DVF with given properties"
 

diff --git a/registration/clitkConvertPointList.ggo b/registration/clitkConvertPointList.ggo
index 9c7ac9e7ec2318a6a2517b6b954678c7e7cae50a..fe4505067d41b518ee9cb2dda6c786b7c4256705 100755 (executable)
--- a/registration/clitkConvertPointList.ggo
+++ b/registration/clitkConvertPointList.ggo
@@ -1,5 +1,5 @@
 #File clitkConvertPointList.ggo
 #File clitkConvertPointList.ggo

-Package "clitkConvertPointList"
+package "clitkConvertPointList"

 version "1.0"
 purpose "Convert IX point pair lists (generated using the software described in Murphy2008,MICCAI) to a vv point pair lists"
 
 version "1.0"
 purpose "Convert IX point pair lists (generated using the software described in Murphy2008,MICCAI) to a vv point pair lists"
 

diff --git a/registration/clitkDemonsDeformableRegistration.ggo b/registration/clitkDemonsDeformableRegistration.ggo
index bb5820742176d34b792c7c46f6501882cd72272f..60cefb10c24217ce9c5355fba545c7619a6193c9 100755 (executable)
--- a/registration/clitkDemonsDeformableRegistration.ggo
+++ b/registration/clitkDemonsDeformableRegistration.ggo
@@ -2,8 +2,8 @@
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 13 Februari 2009 16.35 
 
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 13 Februari 2009 16.35 
 

-Package "clitk"
-Version "Apply Demons registration between (2D or 3D) images..."
+package "clitk"
+version "Apply Demons registration between (2D or 3D) images..."

 
 
 option "config"                -       "Config file"                   string          no
 
 
 option "config"                -       "Config file"                   string          no

diff --git a/registration/clitkMatrixTransformToVF.ggo b/registration/clitkMatrixTransformToVF.ggo
index e30742f320e27c30439cd501a9d92d64fb5300ea..0feed946a890f3a0118204b238a0b728713879ae 100755 (executable)
--- a/registration/clitkMatrixTransformToVF.ggo
+++ b/registration/clitkMatrixTransformToVF.ggo
@@ -1,5 +1,5 @@
 #File clitkMatrixTransformToVF.ggo
 #File clitkMatrixTransformToVF.ggo

-Package "clitkMatrixTransformToVF"
+package "clitkMatrixTransformToVF"

 version "1.0"
 purpose "Convert a matrix to a DVF with given properties"
 
 version "1.0"
 purpose "Convert a matrix to a DVF with given properties"
 

diff --git a/registration/clitkMultiResolutionPyramid.ggo b/registration/clitkMultiResolutionPyramid.ggo
index 91f13bf538242936e6303184a913ccffe2da0009..28952ac312c1249fb7590ecaa7249cdd1b46cf52 100644 (file)
--- a/registration/clitkMultiResolutionPyramid.ggo
+++ b/registration/clitkMultiResolutionPyramid.ggo
@@ -1,5 +1,5 @@
 #File clitkMultiResolutionPyramid.ggo
 #File clitkMultiResolutionPyramid.ggo

-Package "clitkMultiResolutionPyramid"
+package "clitkMultiResolutionPyramid"

 version "1.0"
 purpose "Compute the multi-resolution (MR) image pyramid. The conventional filter will also modify the image at the original resolution, the recursive not. The spatio-temporal filters leave the last dimension untouched."
 
 version "1.0"
 purpose "Compute the multi-resolution (MR) image pyramid. The conventional filter will also modify the image at the original resolution, the recursive not. The spatio-temporal filters leave the last dimension untouched."
 

diff --git a/registration/clitkPointTrajectory.ggo b/registration/clitkPointTrajectory.ggo
index b95e0c33b4f3908fc77e5482ea4f4977cecf906d..559d598a067ff3a539337732b06b2431aefc1c5b 100755 (executable)
--- a/registration/clitkPointTrajectory.ggo
+++ b/registration/clitkPointTrajectory.ggo
@@ -1,5 +1,5 @@
 #File clitkPointTrajectory.ggo
 #File clitkPointTrajectory.ggo

-Package "clitkPointTrajectory"
+package "clitkPointTrajectory"

 version "1.0"
 purpose "Compute the cyclic trajectory of a point based input transform. The transform can be given by N lists of (manually identified) landmarks, a 4DDVF or a ST transform. Interpolation is performed between "
 
 version "1.0"
 purpose "Compute the cyclic trajectory of a point based input transform. The transform can be given by N lists of (manually identified) landmarks, a 4DDVF or a ST transform. Interpolation is performed between "
 

diff --git a/registration/clitkResampleBSplineDeformableTransform.ggo b/registration/clitkResampleBSplineDeformableTransform.ggo
index 0dc6054618a97e11d1f8c166385f04dc59feceb2..1317332a2b8818d0ef7b657ad886b22502b242b8 100644 (file)
--- a/registration/clitkResampleBSplineDeformableTransform.ggo
+++ b/registration/clitkResampleBSplineDeformableTransform.ggo
@@ -1,5 +1,5 @@
 #File clitkResampleBSplineDeformableTransform.ggo
 #File clitkResampleBSplineDeformableTransform.ggo

-Package "clitkResampleBSplineDeformableTransform"
+package "clitkResampleBSplineDeformableTransform"

 version "1.0"
 purpose "Resample the B-spline control point grid to given properties. Coefficients are resampled to values with the desired properties and reconverted to coefficients "
 
 version "1.0"
 purpose "Resample the B-spline control point grid to given properties. Coefficients are resampled to values with the desired properties and reconverted to coefficients "
 

diff --git a/registration/clitkSelectPoints.ggo b/registration/clitkSelectPoints.ggo
index 6c15fae703cded30e5a9153fc80c138095cd8c1b..692c8785f15c4c59c1a5bc5afb142e058c9f805f 100755 (executable)
--- a/registration/clitkSelectPoints.ggo
+++ b/registration/clitkSelectPoints.ggo
@@ -1,5 +1,5 @@
 #File clitkSelectPoints.ggo
 #File clitkSelectPoints.ggo

-Package "clitkSelectPoints"
+package "clitkSelectPoints"

 version "1.0"
 purpose "Perform a selection of points on the reference and target lists of points, based on criteria applied to the reference list."
 
 version "1.0"
 purpose "Perform a selection of points on the reference and target lists of points, based on criteria applied to the reference list."
 

diff --git a/registration/clitkShapedBLUTSpatioTemporalDIR.ggo b/registration/clitkShapedBLUTSpatioTemporalDIR.ggo
index 43b7ea10772fad5029f002d681787c04b807203a..299de1b993f4cf6bfb77d1d9cb00a7595fdab698 100755 (executable)
--- a/registration/clitkShapedBLUTSpatioTemporalDIR.ggo
+++ b/registration/clitkShapedBLUTSpatioTemporalDIR.ggo
@@ -2,8 +2,8 @@
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 15 Jan 2009 10.35 
 
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 15 Jan 2009 10.35 
 

-Package "clitk"
-Version "Deform a volume to match a temporal sequence using a spatio-temporal deformation model. By setting the shape of the model, you modify the temporal constraints applied to the cyclic trajectory model."
+package "clitk"
+version "Deform a volume to match a temporal sequence using a spatio-temporal deformation model. By setting the shape of the model, you modify the temporal constraints applied to the cyclic trajectory model."

 
 option "config"                -       "Config file"                   string          no
 
 
 option "config"                -       "Config file"                   string          no
 

diff --git a/tools/clitkBSplineCoefficientsToValues.ggo b/tools/clitkBSplineCoefficientsToValues.ggo
index 41d66888959ea0a92278b2b674eee5f946ad1a9b..69d303b1d38db677ff5d5741a1040956b23cda01 100644 (file)
--- a/tools/clitkBSplineCoefficientsToValues.ggo
+++ b/tools/clitkBSplineCoefficientsToValues.ggo
@@ -1,5 +1,5 @@
 #File clitkBSplineCoefficientsToValues.ggo
 #File clitkBSplineCoefficientsToValues.ggo

-Package "clitkBSplineCoefficientsToValues"
+package "clitkBSplineCoefficientsToValues"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkBackProjectImage.ggo b/tools/clitkBackProjectImage.ggo
index 12a2a6c439be1256a86fb6e56a382d36ca0432c8..24e1de1ca36dd1656c63821ad19d67431ffe9e53 100755 (executable)
--- a/tools/clitkBackProjectImage.ggo
+++ b/tools/clitkBackProjectImage.ggo
@@ -2,8 +2,8 @@
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 24 February 2009 16.35 
 
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 24 February 2009 16.35 
 

-Package "clitk"
-Version "Back project a 2D image with cone-beam geometry"
+package "clitk"
+version "Back project a 2D image with cone-beam geometry"

 
 option "config"                        -       "Config file"                     string        no
 
 
 option "config"                        -       "Config file"                     string        no
 

diff --git a/tools/clitkChangeImageOrientation.ggo b/tools/clitkChangeImageOrientation.ggo
index 1470d136020b705a89d41d139c916d873f83b04c..ebda22c02542e82693e3be1303e1496a4fcf0309 100755 (executable)
--- a/tools/clitkChangeImageOrientation.ggo
+++ b/tools/clitkChangeImageOrientation.ggo
@@ -1,5 +1,5 @@
 #File clitkChangeImageOrientation.ggo
 #File clitkChangeImageOrientation.ggo

-Package "clitkChangeImageOrientation"
+package "clitkChangeImageOrientation"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkCombineImage.ggo b/tools/clitkCombineImage.ggo
index 9ad4023c296e2870f3bc1ac543ac63bb2559e05d..a8e7c17f36ed9da3575e42b4e351b80543a3c127 100755 (executable)
--- a/tools/clitkCombineImage.ggo
+++ b/tools/clitkCombineImage.ggo
@@ -1,5 +1,5 @@
 #File clitkCombineImage.ggo
 #File clitkCombineImage.ggo

-Package "clitkCombineImage"
+package "clitkCombineImage"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkComposeVF.ggo b/tools/clitkComposeVF.ggo
index ac2b8dd5127ff2160d1b9913deda55914be0497e..52f3e20dc3dd32156f634cb839523d2b07db5f6e 100755 (executable)
--- a/tools/clitkComposeVF.ggo
+++ b/tools/clitkComposeVF.ggo
@@ -2,8 +2,8 @@
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 20 August 16.35 
 
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 20 August 16.35 
 

-Package "clitk"
-Version "Read two vector fields (.mhd, .vf, ..) and compose them using linear interpolation"
+package "clitk"
+version "Read two vector fields (.mhd, .vf, ..) and compose them using linear interpolation"

 
 option "config"                        -       "Config file"                   string          no
 option "input1"                i       "Input1 VF filename"            string          yes
 
 option "config"                        -       "Config file"                   string          no
 option "input1"                i       "Input1 VF filename"            string          yes

diff --git a/tools/clitkConeBeamProjectImage.ggo b/tools/clitkConeBeamProjectImage.ggo
index 945b96d4d52d469a5329c8cbfff0da930cd52d96..9e9772e7911ab326fbd35ad95b179e6b1854d514 100755 (executable)
--- a/tools/clitkConeBeamProjectImage.ggo
+++ b/tools/clitkConeBeamProjectImage.ggo
@@ -1,6 +1,6 @@
 #File clitkConeBeamProjectImage.ggo
 #File clitkConeBeamProjectImage.ggo

-Package "clitk"
-Version "Project a 3D image with cone-beam geometry"
+package "clitk"
+version "Project a 3D image with cone-beam geometry"

 
 option "config"                        -       "Config file"                     string        no
 
 
 option "config"                        -       "Config file"                     string        no
 

diff --git a/tools/clitkCropImage.ggo b/tools/clitkCropImage.ggo
index d80892105f937613faf8979908a22e02edfdbb50..ce5eab1bf95eb33df9c375bb39411684a8d39298 100755 (executable)
--- a/tools/clitkCropImage.ggo
+++ b/tools/clitkCropImage.ggo
@@ -1,5 +1,5 @@
 #File clitkCropImage.ggo
 #File clitkCropImage.ggo

-Package "clitkCropImage"
+package "clitkCropImage"

 version "1.0"
 purpose "Reduce the image size by removing regions at the lower and upper end."
 
 version "1.0"
 purpose "Reduce the image size by removing regions at the lower and upper end."
 

diff --git a/tools/clitkDicomRTStructInfo.ggo b/tools/clitkDicomRTStructInfo.ggo
index 594de5d4253f36b25bc8f064a83bf8f79f990dd1..4d4021af6c088e28a1b89c1554cce3bdd2c1797c 100644 (file)
--- a/tools/clitkDicomRTStructInfo.ggo
+++ b/tools/clitkDicomRTStructInfo.ggo
@@ -1,5 +1,5 @@
 # file clitkDicomRTStructInfo.ggo
 # file clitkDicomRTStructInfo.ggo

-Package "clitk"
+package "clitk"

 version "Read and print DICOM RT Structure set file (contours)"
 
 option "config"                 - "Config file"                 string         no
 version "Read and print DICOM RT Structure set file (contours)"
 
 option "config"                 - "Config file"                 string         no

diff --git a/tools/clitkExtractSlice.ggo b/tools/clitkExtractSlice.ggo
index 9f247360f3e0a2396958bf752468dd3b678683ee..e963357a8bac83253c0b295862884bf29c52ac98 100755 (executable)
--- a/tools/clitkExtractSlice.ggo
+++ b/tools/clitkExtractSlice.ggo
@@ -1,5 +1,5 @@
 #File clitkExtractSlice.ggo
 #File clitkExtractSlice.ggo

-Package "clitkExtractSlice"
+package "clitkExtractSlice"

 version "1.0"
 purpose "Extract a slice: will collapse the dimension given by axe, retaining only the index given by slice."
 
 version "1.0"
 purpose "Extract a slice: will collapse the dimension given by axe, retaining only the index given by slice."
 

diff --git a/tools/clitkFilter.ggo b/tools/clitkFilter.ggo
index 6cceb75bd608b7459820bf5fbb35c0c38f92cb96..2eb2bc867f3540107c05713daf1de0f47d444074 100755 (executable)
--- a/tools/clitkFilter.ggo
+++ b/tools/clitkFilter.ggo
@@ -1,5 +1,5 @@
 #File clitkFilter.ggo
 #File clitkFilter.ggo

-Package "clitkFilter"
+package "clitkFilter"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkFlipImage.ggo b/tools/clitkFlipImage.ggo
index 9eabf27672c5503d46e5f9b104131909cf0def0c..f8d1a6350014f8570a0b21af5f023f2893c03ba1 100755 (executable)
--- a/tools/clitkFlipImage.ggo
+++ b/tools/clitkFlipImage.ggo
@@ -1,5 +1,5 @@
 #File clitkFlipImage.ggo
 #File clitkFlipImage.ggo

-Package "clitkFlipImage"
+package "clitkFlipImage"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkGetDirection.ggo b/tools/clitkGetDirection.ggo
index a9c70a5180bd8d40f023d2b4eccd974611a9523b..91797992979ab079e8c4d641a02b32e930038034 100755 (executable)
--- a/tools/clitkGetDirection.ggo
+++ b/tools/clitkGetDirection.ggo
@@ -1,5 +1,5 @@
 #File clitkGetDirection.ggo
 #File clitkGetDirection.ggo

-Package "clitkGetDirection"
+package "clitkGetDirection"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkGetOrigin.ggo b/tools/clitkGetOrigin.ggo
index 221498d86bfce70adc9eea72e861b595b74911d7..4af7499f77e74dbddceb77e5860abd4d6b82e5a0 100755 (executable)
--- a/tools/clitkGetOrigin.ggo
+++ b/tools/clitkGetOrigin.ggo
@@ -1,5 +1,5 @@
 #File clitkGetOrigin.ggo
 #File clitkGetOrigin.ggo

-Package "clitkGetOrigin"
+package "clitkGetOrigin"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkGetSize.ggo b/tools/clitkGetSize.ggo
index 7243283f3188f6b028f8e99f26f9ffe8ede327ec..2fbb51bce492918745e6341e5c0453e384f668c1 100755 (executable)
--- a/tools/clitkGetSize.ggo
+++ b/tools/clitkGetSize.ggo
@@ -1,5 +1,5 @@
 #File clitkGetSize.ggo
 #File clitkGetSize.ggo

-Package "clitkGetSize"
+package "clitkGetSize"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkGetSpacing.ggo b/tools/clitkGetSpacing.ggo
index f7a37e2967b6308558564d18b6120c54208c88b0..9cdb22547f3069729038ac8b3e8461e64914ecdd 100755 (executable)
--- a/tools/clitkGetSpacing.ggo
+++ b/tools/clitkGetSpacing.ggo
@@ -1,5 +1,5 @@
 #File clitkGetSpacing.ggo
 #File clitkGetSpacing.ggo

-Package "clitkGetSpacing"
+package "clitkGetSpacing"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkImageLog.ggo b/tools/clitkImageLog.ggo
index 783549fdb31e46776f40e91c8877561acb2ca5b0..0f406823e8a1b112d1c8c23383c3cea2a8218253 100755 (executable)
--- a/tools/clitkImageLog.ggo
+++ b/tools/clitkImageLog.ggo
@@ -1,5 +1,5 @@
 # file clitkImageLog.ggo
 # file clitkImageLog.ggo

-Package "clitk"
+package "clitk"

 version "Perform a inverse normalized log on the image"
 
 option "config"                 -      "Config file"                           string  no
 version "Perform a inverse normalized log on the image"
 
 option "config"                 -      "Config file"                           string  no

diff --git a/tools/clitkImageMoment.ggo b/tools/clitkImageMoment.ggo
index 4bdd3554a580c095bc5c6122abac150d642ae65f..12f8895c057229eb5326b923d28baaa351976e52 100755 (executable)
--- a/tools/clitkImageMoment.ggo
+++ b/tools/clitkImageMoment.ggo
@@ -1,5 +1,5 @@
 #File clitkImageMoment.ggo
 #File clitkImageMoment.ggo

-Package "clitkImageMoment"
+package "clitkImageMoment"

 version "1.0"
 purpose "Calculate the image moment: the center of gravity"
 
 version "1.0"
 purpose "Calculate the image moment: the center of gravity"
 

diff --git a/tools/clitkImageStatistics.ggo b/tools/clitkImageStatistics.ggo
index efc044d095ac639c6ebe7be0bcc22e5d229b1376..863dfbd2319364036fa1e30fe9e337f441eab8bf 100755 (executable)
--- a/tools/clitkImageStatistics.ggo
+++ b/tools/clitkImageStatistics.ggo
@@ -1,5 +1,5 @@
 #File clitkImageStatistics.ggo
 #File clitkImageStatistics.ggo

-Package "clitkImageStatistics"
+package "clitkImageStatistics"

 version "1.0"
 purpose "Compute statistics on an image, or on part of an image specified by a mask and label(s)"
 
 version "1.0"
 purpose "Compute statistics on an image, or on part of an image specified by a mask and label(s)"
 

diff --git a/tools/clitkImageToVectorImage.ggo b/tools/clitkImageToVectorImage.ggo
index af0f0f555bbfa58b3a3e5608c918100329de880b..f9751a0135172d6622fba8bfb84bc812d92d0be4 100755 (executable)
--- a/tools/clitkImageToVectorImage.ggo
+++ b/tools/clitkImageToVectorImage.ggo
@@ -1,5 +1,5 @@
 #File clitkImageToVectorImage.ggo
 #File clitkImageToVectorImage.ggo

-Package "clitkImageToVectorImage"
+package "clitkImageToVectorImage"

 version "1.0"
 purpose "Compose 3 images to 1 vector image"
 
 version "1.0"
 purpose "Compose 3 images to 1 vector image"
 

diff --git a/tools/clitkImageWarp.ggo b/tools/clitkImageWarp.ggo
index a6c8853ee470428e0c54fd065d743c93d16c5438..520ff5299bf0d0feb785f7c054629dd93d3dd7f9 100644 (file)
--- a/tools/clitkImageWarp.ggo
+++ b/tools/clitkImageWarp.ggo
@@ -2,8 +2,8 @@
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 13 August 19.35 
 
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 13 August 19.35 
 

-Package "clitk"
-Version "Read an Image (short, char or float; 2D or 3D) and a vector field (float, 2D or 3D) and deform the input through backward or forward mapping."
+package "clitk"
+version "Read an Image (short, char or float; 2D or 3D) and a vector field (float, 2D or 3D) and deform the input through backward or forward mapping."

 
 option "config"                        -       "Config file"                                                                   string          no
 option "verbose"               v       "Verbose"                                                                       flag            off
 
 option "config"                        -       "Config file"                                                                   string          no
 option "verbose"               v       "Verbose"                                                                       flag            off

diff --git a/tools/clitkMergeSequence.ggo b/tools/clitkMergeSequence.ggo
index 5354c1f8bb5d6d56a7079556d4c1aea29173d0f2..179c03a636a42352dee84b8e7b105e332c749766 100755 (executable)
--- a/tools/clitkMergeSequence.ggo
+++ b/tools/clitkMergeSequence.ggo
@@ -2,8 +2,8 @@
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 15 June 16.35 
 
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 15 June 16.35 
 

-Package "clitk"
-Version "Read a series a nD images (unnamed inputs) and merge them to a (n+1)D image"
+package "clitk"
+version "Read a series a nD images (unnamed inputs) and merge them to a (n+1)D image"

 
 option "config"                        -       "Config file"                                                   string          no
 option "spacing"               s       "Spacing for the new dimension"                                 double          no      default="1"
 
 option "config"                        -       "Config file"                                                   string          no
 option "spacing"               s       "Spacing for the new dimension"                                 double          no      default="1"

diff --git a/tools/clitkMirrorPadImage.ggo b/tools/clitkMirrorPadImage.ggo
index c02bf21c9f709fbbb2e8bafdfa3cdcc7d57809b1..5f7d6ee6a73630f87065e88992cda43b5e44b497 100755 (executable)
--- a/tools/clitkMirrorPadImage.ggo
+++ b/tools/clitkMirrorPadImage.ggo
@@ -1,5 +1,5 @@
 #File clitkMirrorPadImage.ggo
 #File clitkMirrorPadImage.ggo

-Package "clitkMirrorPadImage"
+package "clitkMirrorPadImage"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkPermuteAxes.ggo b/tools/clitkPermuteAxes.ggo
index 32c2f6b6decf70730f33e3ef4a5097a57428e46f..7962ac42c79835eeea4621245e8245f8a1360f6f 100755 (executable)
--- a/tools/clitkPermuteAxes.ggo
+++ b/tools/clitkPermuteAxes.ggo
@@ -1,5 +1,5 @@
 #File clitkPermuteAxes.ggo
 #File clitkPermuteAxes.ggo

-Package "clitkPermuteAxes"
+package "clitkPermuteAxes"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkSetDirection.ggo b/tools/clitkSetDirection.ggo
index 45332bae495f1fa11ec3df65820b1ff0def691a0..f79a4f1171a848300183fee7215d4fc4d0688935 100755 (executable)
--- a/tools/clitkSetDirection.ggo
+++ b/tools/clitkSetDirection.ggo
@@ -1,5 +1,5 @@
 #File clitkSetDirection.ggo
 #File clitkSetDirection.ggo

-Package "clitkSetDirection"
+package "clitkSetDirection"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkSetOrigin.ggo b/tools/clitkSetOrigin.ggo
index 8f550d392e97056b155b5d49486f5a19b2f9e208..a2c3392a630d52e074f4961dbe64be74990a5ce1 100755 (executable)
--- a/tools/clitkSetOrigin.ggo
+++ b/tools/clitkSetOrigin.ggo
@@ -1,5 +1,5 @@
 #File clitkSetOrigin.ggo
 #File clitkSetOrigin.ggo

-Package "clitkSetOrigin"
+package "clitkSetOrigin"

 version "1.0"
 purpose "Set the origin field of a generic image"
 
 version "1.0"
 purpose "Set the origin field of a generic image"
 

diff --git a/tools/clitkSetSpacing.ggo b/tools/clitkSetSpacing.ggo
index 1320c3e05065071a02e4b880d0c42d22c1097b35..5df58888ef79e4822c7a636e30a4729c64ff04c2 100755 (executable)
--- a/tools/clitkSetSpacing.ggo
+++ b/tools/clitkSetSpacing.ggo
@@ -1,5 +1,5 @@
 #File clitkSetSpacing.ggo
 #File clitkSetSpacing.ggo

-Package "clitkSetSpacing"
+package "clitkSetSpacing"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkVFConvert.ggo b/tools/clitkVFConvert.ggo
index 32eec43b9d1286002dccbe940669b2c82ef76b5a..207ed66b1c5f3eecbc296f4b919d6cdd69d3ff44 100755 (executable)
--- a/tools/clitkVFConvert.ggo
+++ b/tools/clitkVFConvert.ggo
@@ -1,5 +1,5 @@
 #File clitkVFConvert.ggo
 #File clitkVFConvert.ggo

-Package "clitkVFConvert"
+package "clitkVFConvert"

 version "1.0"
 purpose "Convert file format"
 
 version "1.0"
 purpose "Convert file format"
 

diff --git a/tools/clitkValuesToBSplineCoefficients.ggo b/tools/clitkValuesToBSplineCoefficients.ggo
index 699f60a38317699d9e244ba3928b947c94d58654..f0590732cb85bcadf48176b6f50ab18355cb4669 100644 (file)
--- a/tools/clitkValuesToBSplineCoefficients.ggo
+++ b/tools/clitkValuesToBSplineCoefficients.ggo
@@ -1,5 +1,5 @@
 #File clitkValuesToBSplineCoefficients.ggo
 #File clitkValuesToBSplineCoefficients.ggo

-Package "clitkValuesToBSplineCoefficients"
+package "clitkValuesToBSplineCoefficients"

 version "1.0"
 purpose ""
 
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkVectorImageToImage.ggo b/tools/clitkVectorImageToImage.ggo
index 8bca8edf8776082e90ce52f5521008c67b184f32..ecae271f03d6a4400ece13dce725854dad264cfb 100755 (executable)
--- a/tools/clitkVectorImageToImage.ggo
+++ b/tools/clitkVectorImageToImage.ggo
@@ -1,5 +1,5 @@
 #File clitkVectorImageToImage.ggo
 #File clitkVectorImageToImage.ggo

-Package "clitkVectorImageToImage"
+package "clitkVectorImageToImage"

 version "1.0"
 purpose "Extract a component image from a vector image"
 
 version "1.0"
 purpose "Extract a component image from a vector image"