Add doc tool for th wiki

diff --git a/docWiki.sh b/docWiki.sh
new file mode 100755 (executable)
index 0000000..4017f7c
--- /dev/null
+++ b/docWiki.sh
@@ -0,0 +1,110 @@
+#Write all help of syd tools in a file sydTool.md
+#Execute it in src folder but the tools have to be into ../bin/bin (or change it)
+#Results are in src folder
+
+#!/bin/bash
+set -ev
+currentFolder=$PWD
+#Copy all help into a temporary file
+tempFile=tempDoc.txt
+cd ./vv_bin/bin
+clitkTools=`ls clitk*`
+echo "This page contains additional information on how to use clitk tools:" > $tempFile
+echo "" >> $tempFile
+for tool in $clitkTools
+do
+  echo "==== " $tool " ====" >> $tempFile
+  $tool -h >> $tempFile
+  echo "" >> $tempFile
+  echo "" >> $tempFile
+  echo "" >> $tempFile
+  echo "" >> $tempFile
+done
+
+#Write the .md file
+docFile="$currentFolder/clitkTool.txt"
+rm $docFile
+helpLine=false  #Boolean to know if we are reading the command lines starting with '-h, --help' and finishing with '##' or just the help
+echoLine=""
+writeLine=false;
+while IFS='' read -r line || [[ -n "$line" ]]; do #read all lines
+    copyLine=$line;
+    line=`echo "$line" | sed -e 's/^[ \t]*//'`; # prevent whitespace at the begining of the line
+    if [[ $line == *"-h, --help"* ]]; then
+      helpLine=true;
+    fi
+    if [[ $line == *"===="* ]]; then
+      if $writeLine; then
+        echo "$echoLine||" >> $docFile;
+      fi
+      echoLine="";
+      echo "" >> $docFile;
+      echo "" >> $docFile;
+      echo "" >> $tempFile
+      echo "" >> $tempFile
+      writeLine=false;
+      helpLine=false;
+    fi
+
+    if $helpLine; then
+      if [[ $line == "" ]]; then
+        continue;
+      fi
+      #Create the string according to the different case of ggo
+      #Start with -h
+      #Start with --help
+      #Start with comment
+      #Start with title
+      if [[ $line == "-"[a-zA-Z]* ]]; then
+        if $writeLine; then
+          echoLine="$echoLine||";
+          echo "$echoLine" >> $docFile;
+        fi
+        writeLine=true;
+        echoLine="||";
+        tempString=`echo "$line" | cut -c1-2`; # eg take the -h
+        echoLine="$echoLine$tempString";
+        line=`echo "$line" | cut -d' ' -f2-`; # remove -h, (first word)
+        line=`echo "$line" | sed -e 's/^[ \t]*//'`; # prevent whitespace at the begining of the line
+        echoLine="$echoLine||";
+        tempString=`echo "$line" | cut -f 1 -d " "`; # eg take the --help (first word)
+        echoLine="$echoLine$tempString";
+        line=`echo "$line" | cut -d' ' -f2-`; # remove --help (first word)
+        line=`echo "$line" | sed -e 's/^[ \t]*//'`; # prevent whitespace at the begining of the line
+        echoLine="$echoLine||$line";
+      elif [[ $line == "--"* ]]; then
+        if $writeLine; then
+          echoLine="$echoLine||";
+          echo "$echoLine" >> $docFile;
+        fi
+        writeLine=true;
+        echoLine="|| ||";
+        tempString=`echo "$line" | cut -f 1 -d " "`; # eg take the --help (first word)
+        echoLine="$echoLine$tempString";
+        line=`echo "$line" | cut -d' ' -f2-`; # remove --help (first word)
+        line=`echo "$line" | sed -e 's/^[ \t]*//'`; # prevent whitespace at the begining of the line
+        echoLine="$echoLine||$line";
+      elif [[ $copyLine == " "* ]]; then
+        echoLine="$echoLine$line";
+      else
+        if $writeLine; then
+          echoLine="$echoLine||";
+          echo "$echoLine" >> $docFile;
+        fi
+        echoLine="||||||<style=\"&quot; &amp; quot;text-align:center&amp; quot; &quot;\">$line||";
+        echo "$echoLine" >> $docFile;
+        echoLine="";
+        writeLine=false;
+      fi
+    else
+      if [[ `echo "$line" | cut -c1-1` = "-" ]]; then
+        echo "  " >> $docFile;
+        echo "\\$line" >> $docFile;
+      else
+        echo "$line" >> $docFile;
+      fi
+    fi
+done < "$tempFile"
+echo "$echoLine||" >> $docFile
+rm $tempFile
+cd $currentFolder