+++ /dev/null
-# Rename the dcm extension files of a given directory according
-# to series and image number information extracted in each respective header.
-
-from gdcmPython import *
-import glob
-import os
-import sys
-
-def PrintUsage():
- print "Usage: python ReorganiseFiles.py <SourceDirectory>"
- print " <SourceDirectory> is the directory containing the source"
- print " images (defaulted to invocation directory."
-
-def Warning(DirName):
- print "Warning: this script will rename files in the"
- print " ", DirName, " directory."
- a = raw_input("Proceed ?[y/n]")
- if a != "y":
- sys.exit()
-
-try:
- SourceDirectory = sys.argv[1]
-except IndexError:
- SourceDirectory = os.getcwd()
-
-if not os.path.isdir(SourceDirectory):
- PrintUsage
-Warning(SourceDirectory)
-SourceFiles=glob.glob(os.path.join(SourceDirectory, "*.dcm"))
-
-for file in SourceFiles:
- header = gdcmHeader(file)
- info = header.GetEntry()
- try:
- ImNum = info["Image Number"]
- if len(ImNum) == 0 or ImNum == "gdcm::Unfound":
- raise KeyError
- except KeyError:
- print "Skipped file ", file, " (unfound Image Number tag)."
- continue
- try:
- SeNum = info["Series Number"]
- if len(SeNum) == 0 or SeNum == "gdcm::Unfound":
- raise KeyError
- except KeyError:
- print "Skipped file ", file, " (unfound Series Number tag)."
- continue
- DestFile = "image_%02d_%04d.dcm"
- DestFile %= (int(info["Image Number"]), int(info["Series Number"]))
- DestFile = os.path.join(SourceDirectory, DestFile)
- # necessary to close the file descriptor to enable further rename.
- del header
- if os.path.isfile(DestFile):
- print "Skipped file ", file, " (allready existing destination"
- print " file ", DestFile
- continue
- os.rename(file, DestFile)
+++ /dev/null
-from gdcmPython import *
-
-### Get filename from command line or default it
-try:
- FileName = sys.argv[1]
-except IndexError:
- FileName = os.path.join(GDCM_DATA_PATH, "test.acr")
-
-if not os.path.isfile(FileName):
- print "Cannot open file ", FileName
- sys.exit()
-
-toRead = gdcmHeader(FileName)
-ValDict = toRead.GetEntry()
-ExploreElements = ["Patient's Name", "Patient ID",
- "Study Date", "Study Time", "Study ID",
- "Study Instance UID",
- "Series Number",
- "Modality"]
-
-for elem in ExploreElements:
- print "[%s] = " % elem,
- try:
- print "[%s]" % ValDict[elem]
- except KeyError:
- print "NOT FOUND"
-
+++ /dev/null
-from gdcmPython import *
-import sys
-
-### Get filename from command line or default it
-try:
- FileName = sys.argv[1]
-except IndexError:
- FileName = os.path.join(GDCM_DATA_PATH, "DICOMDIR")
-
-try:
- printLevel = int(sys.argv[2])
-except IndexError:
- printLevel = 1
-print FileName
-
-### Build the header element list
-toRead = gdcmDicomDir(FileName)
-
-def startMethod():
- print "Python start"
-
-def endMethod():
- print "Python end"
-
-def progressMethod():
- print "Python progress",toRead.GetProgress()
-
-toRead.SetStartMethod(None)
-toRead.SetProgressMethod(progressMethod)
-toRead.SetEndMethod(endMethod)
-toRead.ParseDirectory()
-
-print "##############################################################"
-print "### Display all the elements and their respective values"
-print "## found in the ", FileName, " file."
-print "##############################################################"
-toRead.SetPrintLevel(-1)
-toRead.Print()
-
-ValDict = toRead.GetEntry()
-for key in ValDict.keys():
- print "[%s] = [%s]" %(key, ValDict[key])
-
+++ /dev/null
-from gdcmPython import *
-
-print "##############################################################"
-print "### Display all the possible tags of the current public"
-print "### dictionary"
-print "##############################################################"
-PubList = GetPubDictEntryNames()
-for i in range(0, len(PubList)):
- print " ", PubList[i]
-
-print "##############################################################"
-print "### Display all the possible tags of the current public"
-print "### dictionary, but grouped by using the Fourth field"
-print "##############################################################"
-print " WARNING : the 'fourth' fiels IS NOT part of DICOM"
-print " DO NOT use it"
-PubDict = GetPubDictEntryNamesByCategory()
-for fourth in PubDict:
- print " ############ Fourth group = ", fourth, " ##############"
- for key in PubDict[fourth]:
- print " ", key
+++ /dev/null
-import glob, os
-import sys
-from gdcmPython import *
-
-# Test each file of the Data directory
-
-AllFiles = [
- "CR-MONO1-10-chest.dcm",
- "CT-MONO2-16-brain.dcm",
- "CT-MONO2-16-ort.dcm",
- "CT-MONO2-16-ankle.dcm",
- "CT-MONO2-8-abdo.dcm",
- "CT-MONO2-12-lomb-an2.acr2",
- "CT-MONO2-16-chest.dcm",
- "MR-MONO2-12-angio-an1.acr1",
- "MR-MONO2-12-an2.acr2",
- "MR-MONO2-16-head.dcm",
- "MR-MONO2-12-shoulder.dcm",
- "OT-PAL-8-face.dcm",
- "OT-MONO2-8-a7.dcm",
- "US-RGB-8-esopecho.dcm",
- "US-RGB-8-epicard.dcm",
- "MR-MONO2-8-16x-heart.dcm",
- "NM-MONO2-16-13x-heart.dcm",
- "US-MONO2-8-8x-execho.dcm",
- "US-PAL-8-10x-echo.dcm",
- "XA-MONO2-8-12x-catheter.dcm",
- ]
-
-if __name__ == '__main__':
- # AllFiles = glob.glob(os.path.join(GDCM_TEST_DATA_PATH,"*.dcm"))
- for file in AllFiles:
- fileName = os.path.join(GDCM_TEST_DATA_PATH, file)
- print "############## file :", fileName
- toRead = gdcmHeader(fileName)
- ValDict = toRead.GetEntry()
- for key in ValDict.keys():
- print " [%s] = [%s]" %(key, ValDict[key])
projects / gdcm.git / commitdiff