rtkHndImageIOFactory.cxx
rtkEdfImageIO.cxx
rtkEdfImageIOFactory.cxx
+ rtkXRadImageIO.cxx
+ rtkXRadImageIOFactory.cxx
rtkImagXImageIO.cxx
rtkImagXImageIOFactory.cxx
rtkImagXXMLFileReader.cxx
#include "rtkHndImageIOFactory.h"
#include "rtkEdfImageIOFactory.h"
#include "rtkImagXImageIOFactory.h"
+#include "rtkXRadImageIOFactory.h"
#include "clitkEsrfHstImageIOFactory.h"
#include "clitkGateAsciiImageIOFactory.h"
#include "clitkConfiguration.h"
rtk::HndImageIOFactory::RegisterOneFactory();
rtk::EdfImageIOFactory::RegisterOneFactory();
rtk::ImagXImageIOFactory::RegisterOneFactory();
+ rtk::XRadImageIOFactory::RegisterOneFactory();
clitk::EsrfHstImageIOFactory::RegisterOneFactory();
#if ITK_VERSION_MAJOR >= 4
itk::GDCMImageIOFactory::RegisterOneFactory();
--- /dev/null
+/*=========================================================================
+ *
+ * Copyright RTK Consortium
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0.txt
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ *
+ *=========================================================================*/
+
+#include "rtkXRadImageIO.h"
+
+#include <itkRawImageIO.h>
+#include <itkMetaDataObject.h>
+
+//--------------------------------------------------------------------
+// Read Image Information
+void rtk::XRadImageIO::ReadImageInformation()
+{
+ std::ifstream is;
+ is.open(m_FileName.c_str());
+
+ if(!is.is_open())
+ itkExceptionMacro(<<"Could not open file " << m_FileName);
+
+ SetNumberOfDimensions(3);
+ while(!is.eof())
+ {
+ std::string line;
+ std::string section;
+ std::getline(is, line);
+ if(line.find('[')!=std::string::npos)
+ {
+ unsigned int pos1 = line.find('[');
+ unsigned int pos2 = line.find(']');
+ section = line.substr(pos1+1, pos2-pos1-1);
+ }
+ if(line.find('=')!=std::string::npos)
+ {
+ unsigned int pos = line.find('=');
+ std::string paramName = line.substr(0,pos);
+ std::string paramValue = line.substr(pos+1, line.length()-pos-1);
+
+ if(paramName == std::string("CBCT.DimensionalAttributes.IDim"))
+ SetDimensions(0, atoi(paramValue.c_str()));
+ else if(paramName == std::string("CBCT.DimensionalAttributes.JDim"))
+ SetDimensions(1, atoi(paramValue.c_str()));
+ else if(paramName == std::string("CBCT.DimensionalAttributes.KDim"))
+ SetDimensions(2, atoi(paramValue.c_str()));
+ else if(paramName == std::string("CBCT.DimensionalAttributes.DataSize"))
+ {
+ if(atoi(paramValue.c_str())==3)
+ SetComponentType(itk::ImageIOBase::FLOAT);
+ if(atoi(paramValue.c_str())==6)
+ SetComponentType(itk::ImageIOBase::USHORT);
+ }
+ else if(paramName == std::string("CBCT.DimensionalAttributes.PixelDimension_I_cm"))
+ {
+ double spacing = 0.1*atof(paramValue.c_str());
+ SetSpacing(0, (spacing==0.)?1.:spacing);
+ }
+ else if(paramName == std::string("CBCT.DimensionalAttributes.PixelDimension_J_cm"))
+ {
+ double spacing = 0.1*atof(paramValue.c_str());
+ SetSpacing(1, (spacing==0.)?1.:spacing);
+ }
+ else if(paramName == std::string("CBCT.DimensionalAttributes.PixelDimension_K_cm"))
+ {
+ double spacing = 0.1*atof(paramValue.c_str());
+ SetSpacing(2, (spacing==0.)?1.:spacing);
+ }
+ else
+ {
+ paramName = section + std::string("_") + paramName;
+ itk::EncapsulateMetaData<std::string>(this->GetMetaDataDictionary(),
+ paramName.c_str(),
+ paramValue);
+ }
+ }
+
+ }
+} ////
+
+//--------------------------------------------------------------------
+// Read Image Information
+bool rtk::XRadImageIO::CanReadFile(const char* FileNameToRead)
+{
+ std::string filename(FileNameToRead);
+ const std::string::size_type it = filename.find_last_of( "." );
+ std::string fileExt( filename, it+1, filename.length() );
+
+ if (fileExt != std::string("header") ) return false;
+ return true;
+} ////
+
+//--------------------------------------------------------------------
+// Read Image Content
+void rtk::XRadImageIO::Read(void * buffer)
+{
+ // Adapted from itkRawImageIO
+ std::string rawFileName( m_FileName, 0, m_FileName.size()-6);
+ rawFileName += "img";
+
+ std::ifstream is(rawFileName.c_str(), std::ios::binary);
+ if(!is.is_open() )
+ itkExceptionMacro(<<"Could not open file " << rawFileName);
+
+ unsigned long numberOfBytesToBeRead = GetComponentSize();
+ for(unsigned int i=0; i<GetNumberOfDimensions(); i++) numberOfBytesToBeRead *= GetDimensions(i);
+
+ if(!this->ReadBufferAsBinary(is, buffer, numberOfBytesToBeRead) ) {
+ itkExceptionMacro(<<"Read failed: Wanted "
+ << numberOfBytesToBeRead
+ << " bytes, but read "
+ << is.gcount() << " bytes.");
+ }
+ itkDebugMacro(<< "Reading Done");
+
+ // Adapted from itkRawImageIO
+ {
+ using namespace itk;
+ // Swap bytes if necessary
+ if itkReadRawBytesAfterSwappingMacro( unsigned short, USHORT )
+ else if itkReadRawBytesAfterSwappingMacro( short, SHORT )
+ else if itkReadRawBytesAfterSwappingMacro( char, CHAR )
+ else if itkReadRawBytesAfterSwappingMacro( unsigned char, UCHAR )
+ else if itkReadRawBytesAfterSwappingMacro( unsigned int, UINT )
+ else if itkReadRawBytesAfterSwappingMacro( int, INT )
+ else if itkReadRawBytesAfterSwappingMacro( unsigned int, ULONG )
+ else if itkReadRawBytesAfterSwappingMacro( int, LONG )
+ else if itkReadRawBytesAfterSwappingMacro( float, FLOAT )
+ else if itkReadRawBytesAfterSwappingMacro( double, DOUBLE );
+ }
+}
+
+//--------------------------------------------------------------------
+// Write Image Information
+void rtk::XRadImageIO::WriteImageInformation(bool keepOfStream)
+{
+}
+
+//--------------------------------------------------------------------
+// Write Image Information
+bool rtk::XRadImageIO::CanWriteFile(const char* FileNameToWrite)
+{
+ return false;
+}
+
+//--------------------------------------------------------------------
+// Write Image
+void rtk::XRadImageIO::Write(const void * buffer)
+{
+} ////
--- /dev/null
+/*=========================================================================
+ *
+ * Copyright RTK Consortium
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0.txt
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ *
+ *=========================================================================*/
+
+#ifndef __rtkXRadImageIO_h
+#define __rtkXRadImageIO_h
+
+#include <itkImageIOBase.h>
+#include <fstream>
+#include <string.h>
+
+namespace rtk {
+
+/** \class XRadImageIO
+ * \brief Class for reading XRad image file format. XRad is the format of
+ * exported X-ray projection images on the small animal irradiator SMART.
+ * http://www.pxinc.com/products/small-animal-igrt-platform/x-rad-225cx/
+ *
+ * \author Simon Rit
+ *
+ * \ingroup IOFilters
+ */
+class XRadImageIO : public itk::ImageIOBase
+{
+public:
+ /** Standard class typedefs. */
+ typedef XRadImageIO Self;
+ typedef itk::ImageIOBase Superclass;
+ typedef itk::SmartPointer<Self> Pointer;
+
+ XRadImageIO(): Superclass() {}
+
+ /** Method for creation through the object factory. */
+ itkNewMacro(Self);
+
+ /** Run-time type information (and related methods). */
+ itkTypeMacro(XRadImageIO, ImageIOBase);
+
+ /*-------- This part of the interface deals with reading data. ------ */
+ virtual void ReadImageInformation();
+
+ virtual bool CanReadFile( const char* FileNameToRead );
+
+ virtual void Read(void * buffer);
+
+ /*-------- This part of the interfaces deals with writing data. ----- */
+ virtual void WriteImageInformation(bool keepOfStream);
+
+ virtual void WriteImageInformation() {
+ WriteImageInformation(false);
+ }
+
+ virtual bool CanWriteFile(const char* filename);
+
+ virtual void Write(const void* buffer);
+
+protected:
+
+}; // end class XRadImageIO
+
+} // end namespace
+
+#endif
--- /dev/null
+/*=========================================================================
+ *
+ * Copyright RTK Consortium
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0.txt
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ *
+ *=========================================================================*/
+
+#include "rtkXRadImageIOFactory.h"
+
+//====================================================================
+rtk::XRadImageIOFactory::XRadImageIOFactory()
+{
+ this->RegisterOverride("itkImageIOBase",
+ "XRadImageIO",
+ "XRad Image IO",
+ 1,
+ itk::CreateObjectFunction<XRadImageIO>::New() );
+}
--- /dev/null
+/*=========================================================================
+ *
+ * Copyright RTK Consortium
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0.txt
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ *
+ *=========================================================================*/
+
+#ifndef __rtkXRadImageIOFactory_h
+#define __rtkXRadImageIOFactory_h
+
+#include "rtkXRadImageIO.h"
+#include <itkImageIOBase.h>
+#include <itkObjectFactoryBase.h>
+#include <itkVersion.h>
+
+namespace rtk {
+
+/** \class XRadImageIOFactory
+ * \brief ITK factory for XRad file I/O.
+ *
+ * \author Simon Rit
+ */
+class XRadImageIOFactory : public itk::ObjectFactoryBase
+{
+public:
+ /** Standard class typedefs. */
+ typedef XRadImageIOFactory Self;
+ typedef itk::ObjectFactoryBase Superclass;
+ typedef itk::SmartPointer<Self> Pointer;
+ typedef itk::SmartPointer<const Self> ConstPointer;
+
+ /** Class methods used to interface with the registered factories. */
+ const char* GetITKSourceVersion(void) const {
+ return ITK_SOURCE_VERSION;
+ }
+
+ const char* GetDescription(void) const {
+ return "XRad ImageIO Factory, allows the loading of XRad images into insight";
+ }
+
+ /** Method for class instantiation. */
+ itkFactorylessNewMacro(Self);
+
+ /** Run-time type information (and related methods). */
+ itkTypeMacro(XRadImageIOFactory, ObjectFactoryBase);
+
+ /** Register one factory of this type */
+ static void RegisterOneFactory(void) {
+ ObjectFactoryBase::RegisterFactory( Self::New() );
+ }
+
+protected:
+ XRadImageIOFactory();
+ ~XRadImageIOFactory() {}
+
+ typedef XRadImageIOFactory myProductType;
+ const myProductType* m_MyProduct;
+private:
+ XRadImageIOFactory(const Self&); //purposely not implemented
+ void operator=(const Self&); //purposely not implemented
+
+};
+
+} // end namespace
+
+#endif
return same;
}
//--------------------------------------------------------------------
+itk::MetaDataDictionary* vvImage::GetFirstMetaDataDictionary()
+{
+ return mDictionary[0];
+}
+//--------------------------------------------------------------------
#endif // VVIMAGE_CXX
void SetTimeSpacing(double s) { mTimeSpacing = s; }
void SetTimeOrigin(double o) { mTimeOrigin = o; }
bool HaveSameSizeAndSpacingThan(vvImage * other);
+ //META DATA
+ itk::MetaDataDictionary* GetFirstMetaDataDictionary();
private:
vvImage();
std::vector< ConverterPointer > mItkToVtkConverters;
std::vector< vtkImageData* > mVtkImages;
std::vector< vtkSmartPointer<vtkTransform> > mTransform;
+ //META DATA
+ std::vector< itk::MetaDataDictionary* > mDictionary;
double mTimeOrigin;
double mTimeSpacing;
mTransform.push_back(vtkSmartPointer<vtkTransform>::New());
mTransform.back()->SetMatrix(matrix);
+ //META DATA
+ mDictionary.push_back(&(input->GetMetaDataDictionary()));
}
//--------------------------------------------------------------------
void clitk::ExtractPatientGenericFilter<ArgsInfoType>::InitializeImageType()
{
ADD_IMAGE_TYPE(Dim, short);
+ ADD_IMAGE_TYPE(Dim, unsigned short);
+ ADD_IMAGE_TYPE(Dim, float);
// ADD_IMAGE_TYPE(Dim, int);
// ADD_IMAGE_TYPE(Dim, float);
}
</property>
</widget>
</item>
- <item row="1" column="0">
+ <item row="2" column="0">
<widget class="QLabel" name="dimensionStaticLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Fixed" vsizetype="Fixed">
</property>
</widget>
</item>
- <item row="1" column="1">
+ <item row="2" column="1">
<widget class="QLabel" name="dimensionLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
</property>
</widget>
</item>
- <item row="2" column="0">
+ <item row="3" column="0">
<widget class="QLabel" name="sizePixelStaticLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Fixed" vsizetype="Fixed">
</property>
</widget>
</item>
- <item row="2" column="1">
+ <item row="3" column="1">
<widget class="QLabel" name="sizePixelLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
</property>
</widget>
</item>
- <item row="3" column="0">
+ <item row="4" column="0">
<widget class="QLabel" name="sizeMMStaticLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Fixed" vsizetype="Fixed">
</property>
</widget>
</item>
- <item row="3" column="1">
+ <item row="4" column="1">
<widget class="QLabel" name="sizeMMLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
</property>
</widget>
</item>
- <item row="4" column="0">
+ <item row="5" column="0">
<widget class="QLabel" name="originStaticLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Fixed" vsizetype="Fixed">
</property>
</widget>
</item>
- <item row="4" column="1">
+ <item row="5" column="1">
<widget class="QLabel" name="originLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
</property>
</widget>
</item>
- <item row="5" column="0">
+ <item row="6" column="0">
<widget class="QLabel" name="spacingStaticLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Fixed" vsizetype="Fixed">
</property>
</widget>
</item>
- <item row="5" column="1">
+ <item row="6" column="1">
<widget class="QLabel" name="spacingLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
</property>
</widget>
</item>
- <item row="6" column="0">
+ <item row="7" column="0">
<widget class="QLabel" name="nPixelStaticLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Fixed" vsizetype="Fixed">
</property>
</widget>
</item>
- <item row="6" column="1">
+ <item row="7" column="1">
<widget class="QLabel" name="nPixelLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
</property>
</widget>
</item>
- <item row="7" column="0">
+ <item row="8" column="0">
<widget class="QLabel" name="mouseStaticLabel_2">
<property name="sizePolicy">
<sizepolicy hsizetype="Preferred" vsizetype="Fixed">
</property>
</widget>
</item>
- <item row="7" column="1">
+ <item row="8" column="1">
<widget class="QLabel" name="mouseLabel">
<property name="text">
<string/>
</property>
</widget>
</item>
- <item row="8" column="0">
+ <item row="9" column="0">
<widget class="QLabel" name="pixelPosStaticLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Preferred" vsizetype="Fixed">
</property>
</widget>
</item>
- <item row="8" column="1">
+ <item row="9" column="1">
<widget class="QLabel" name="pixelPosLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
</property>
</widget>
</item>
- <item row="9" column="0">
+ <item row="10" column="0">
<widget class="QLabel" name="worldPosStaticLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Preferred" vsizetype="Fixed">
</property>
</widget>
</item>
- <item row="9" column="1">
+ <item row="10" column="1">
<widget class="QLabel" name="worldPosLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
</property>
</widget>
</item>
- <item row="10" column="0">
+ <item row="11" column="0">
<widget class="QLabel" name="valueStaticLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Preferred" vsizetype="Fixed">
</property>
</widget>
</item>
- <item row="10" column="1">
+ <item row="11" column="1">
<widget class="QLabel" name="valueLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
</property>
</widget>
</item>
- <item row="11" column="1">
+ <item row="12" column="1">
<widget class="QLabel" name="ViewsLabel">
<property name="text">
<string/>
</property>
</widget>
</item>
- <item row="15" column="0" colspan="2">
+ <item row="16" column="0" colspan="2">
<widget class="QLabel" name="transformationLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
</property>
</widget>
</item>
- <item row="13" column="0">
+ <item row="14" column="0">
<widget class="QLabel" name="TransformationStaticLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Fixed" vsizetype="Fixed">
</property>
</widget>
</item>
- <item row="17" column="0">
+ <item row="18" column="0">
<widget class="QLabel" name="memoryUsageLabel">
<property name="sizePolicy">
<sizepolicy hsizetype="Preferred" vsizetype="Fixed">
</property>
</widget>
</item>
- <item row="12" column="0">
+ <item row="13" column="0">
<spacer name="verticalSpacer">
<property name="orientation">
<enum>Qt::Vertical</enum>
</property>
</spacer>
</item>
+ <item row="1" column="0">
+ <widget class="QLabel" name="creationTimeStaticLabel">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="mouseTracking">
+ <bool>true</bool>
+ </property>
+ <property name="text">
+ <string><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
+<html><head><meta name="qrichtext" content="1" /><style type="text/css">
+p, li { white-space: pre-wrap; }
+</style></head><body style=" font-family:'Sans Serif'; font-size:8pt; font-weight:400; font-style:normal;">
+<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:9pt;"><span style=" font-weight:600;"> Creation time :</span></p></body></html></string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="1">
+ <widget class="QLabel" name="creationTimeLabel">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="text">
+ <string/>
+ </property>
+ </widget>
+ </item>
</layout>
</widget>
</widget>
}
//------------------------------------------------------------------------------
+void vvInfoPanel::setImageCreationTime(QString text)
+{
+ creationTimeLabel->setText(text);
+}
//------------------------------------------------------------------------------
void vvInfoPanel::setDimension(QString text)
void setTransformation(QString text);
void setFileName(QString text);
+ void setImageCreationTime(QString text);
void setSizeMM(QString text);
void setOrigin(QString text);
void setSpacing(QString text);
dim += pixelType + ")";
infoPanel->setFileName(image);
+ std::string creationImageTimeValue("No creation time");
+ itk::ExposeMetaData< std::string > (*imageSelected->GetFirstMetaDataDictionary(), "creationImageTime", creationImageTimeValue);
+ infoPanel->setImageCreationTime(QString(creationImageTimeValue.c_str()));
infoPanel->setDimension(dim);
infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
git://git.creatis.insa-lyon.fr / clitk.git / commitdiff