#include "gdcmFile.h"
#include "gdcmDocument.h"
#include "gdcmValEntry.h"
+#include "gdcmBinEntry.h"
//Generated file:
#include "gdcmDataImages.h"
if( FileExists( output.c_str() ) )
{
- std::cerr << "Don't try to cheat, I am removing the file anyway" << std::endl;
+ // std::cerr << "Don't try to cheat, I am removing the file anyway" << std::endl;
if( !RemoveFile( output.c_str() ) )
{
std::cerr << "Ouch, the file exist, but I cannot remove it" << std::endl;
gdcmFile *original = new gdcmFile( filename );
gdcmFile *copy = new gdcmFile( output );
+ TagDocEntryHT & Ht = original->GetHeader()->GetEntry();
+
//First of all copy the header field by field
+
+ // Warning :Accessor gdcmElementSet::GetEntry() should not exist
+ // It was commented out by Mathieu, that was a *good* idea
+ // (the user does NOT have to know the way we implemented the Header !)
+ // Waiting for a 'clean' solution, I keep the method ...JPRx
+
TagNameHT & nameHt = original->GetHeader()->GetPubDict()->GetEntriesByName();
- for (TagNameHT::iterator tag = nameHt.begin(); tag != nameHt.end(); ++tag)
- {
- if (tag->second->GetVR() == "SQ") //to skip pb of SQ recursive exploration
- continue;
-
- //According to JPR I should also skip those:
-// if (tag->second->GetVR() == "unkn") //to skip pb of SQ recursive exploration
-// continue;
- //no clue what to do with this one
- //std::cerr << "Reading: " << tag->second->GetVR() << std::endl;
- std::string value = ((gdcmValEntry*)(tag->second))->GetValue();
-// if( value.find( "gdcm::NotLoaded" ) == 0 )
-// continue;
+ gdcmValEntry* v;
+ gdcmBinEntry* b;
+ gdcmDocEntry* d;
- //no clue what to do with this one
- if( value.find( "gdcm::Loaded" ) == 0 )
+ for (TagDocEntryHT::iterator tag = Ht.begin(); tag != Ht.end(); ++tag)
+ {
+ d = tag->second;
+ // for private elements, the gdcmDictEntry is unknown
+ // and it's VR is unpredictable ...
+ // ( In *this* case ReplaceOrCreateByNumber
+ // should have a knowledge of the virtual dictionary
+ // gdcmDictSet::VirtualEntry)
+
+ if ( d->GetGroup()%2 == 1) // Skip private Entries
continue;
-
- copy->GetHeader()->ReplaceOrCreateByNumber(
- value,
- tag->second->GetGroup(),
- tag->second->GetElement() );
+
+ if ( gdcmBinEntry* b = dynamic_cast<gdcmBinEntry*>(d) )
+ {
+
+ // std::cout << "BinEntry : "
+ // << "------------- " << b->GetVR() << " "<< std::hex
+ // << b->GetGroup() << " " << b->GetElement() << " "
+ // << " lg=" << b->GetLength()
+ // << std::endl;
+
+ copy->GetHeader()->ReplaceOrCreateByNumber(
+ b->GetVoidArea(),
+ b->GetLength(),
+ b->GetGroup(),
+ b->GetElement() );
+ }
+ else if ( gdcmValEntry* v = dynamic_cast<gdcmValEntry*>(d) )
+ {
+ copy->GetHeader()->ReplaceOrCreateByNumber(
+ v->GetValue(),
+ v->GetGroup(),
+ v->GetElement() );
+ }
+ else
+ {
+ // We skip pb of SQ recursive exploration
+ //std::cout << "Skipped Sequence "
+ // << "------------- " << d->GetVR() << " "<< std::hex
+ // << d->GetGroup() << " " << d->GetElement()
+ // << std::endl;
+ }
}
size_t dataSize = original->GetImageDataSize();
void *imageData = original->GetImageData();
copy->SetImageData(imageData, dataSize);
- //original->GetHeader()->SetImageDataSize(dataSize);
+ original->GetHeader()->SetImageDataSize(dataSize);
+
+ copy->WriteDcmExplVR( output );
- //copy->GetHeader()->PrintEntry();
+ delete original;
+ delete copy;
+
+ copy = new gdcmFile( output );
- //copy->WriteDcmExplVR( output );
-
//Is the file written still gdcm parsable ?
- gdcmFile check( output );
- retVal += !check.GetHeader()->IsReadable();
+ if ( !copy->GetHeader()->IsReadable() )
+ {
+ retVal +=1;
+ std::cout << output << " Failed" << std::endl;
+ }
+ i++;
}
-
return retVal;
}
-
-