Add clitkImage2DicomRTStruct executable to convert a binary image into a dicom-rt...

diff --git a/tools/clitkImage2DicomRTStruct.cxx b/tools/clitkImage2DicomRTStruct.cxx
new file mode 100644 (file)
index 0000000..e48272c
--- /dev/null
+++ b/tools/clitkImage2DicomRTStruct.cxx
@@ -0,0 +1,46 @@
+/*=========================================================================
+  Program:         vv http://www.creatis.insa-lyon.fr/rio/vv
+  Main authors :   XX XX XX
+
+  Authors belongs to: 
+  - University of LYON           http://www.universite-lyon.fr/
+  - Léon Bérard cancer center    http://www.centreleonberard.fr
+  - CREATIS CNRS laboratory      http://www.creatis.insa-lyon.fr
+
+  This software is distributed WITHOUT ANY WARRANTY; without even
+  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+  PURPOSE.  See the copyright notices for more information.
+
+  It is distributed under dual licence
+  - BSD       http://www.opensource.org/licenses/bsd-license.php
+  - CeCILL-B  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+
+  =========================================================================*/
+
+#include "clitkImage2DicomRTStructFilter.h"
+#include "clitkDicomRT_StructureSet.h"
+#include "clitkImage2DicomRTStruct_ggo.h"
+
+//--------------------------------------------------------------------
+int main(int argc, char * argv[]) {
+
+  // Init command line
+  GGO(clitkImage2DicomRTStruct, args_info);
+
+  // Read initial 3D image
+  typedef float PixelType;
+  typedef itk::Image<PixelType, 3> ImageType;
+  ImageType::Pointer input = clitk::readImage<ImageType>(args_info.input_arg, true);
+
+  // Create a filter to convert image into dicomRTStruct
+  clitk::Image2DicomRTStructFilter<PixelType> filter;
+  filter.SetInput(input);
+  filter.Update();
+  
+  // Write result
+  clitk::DicomRT_StructureSet::Pointer s = filter.GetDicomRTStruct();
+  s->Write(args_info.output_arg);
+
+  // This is the end my friend 
+  return 0;
+}

diff --git a/tools/clitkImage2DicomRTStruct.ggo b/tools/clitkImage2DicomRTStruct.ggo
new file mode 100644 (file)
index 0000000..68334b1
--- /dev/null
+++ b/tools/clitkImage2DicomRTStruct.ggo
@@ -0,0 +1,20 @@
+# file clitkImage2DicomRTStruct.ggo
+package "clitk"
+version "Convert (binary) image to DICOM RT Structure Set (contours)"
+
+option "config"                 - "Config file"                     string     no
+option "verbose"         v "Verbose"                        flag       off
+
+option "input"          i "Input image file (binary image"  string     yes
+option "output"                 o "Output DicomRT filename"         string     yes
+
+
+# option "image"                j "Used to read image info (spacing, origin)"    string        yes
+# option "roi"          r "ROI to binarize (if -1 = all roi)"            int    no default="-1"
+
+# option "crop"                 c "Crop binary mask"            flag off
+
+#option "roi"           r "ROI to print (ID)"           int            no
+#option "contour"       c "contour to print (ID)"       int            no
+#option "offset"                o "to display points as image offsets" flag    off
+