# We need to test the reading of all dicom images in the gdcmData directory
# First parse this directory and extract all images
-IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
- FILE(GLOB GDCM_DATA_IMAGES_GLOB
- "${GDCM_DATA_ROOT}/*.acr"
- "${GDCM_DATA_ROOT}/*.dcm"
- "${GDCM_DATA_ROOT}/*.nema"
- "${GDCM_DATA_ROOT}/*.ima"
- )
- FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
- "${GDCM_DATA_ROOT}/*FileSeq0.acr"
- "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
- "${GDCM_DATA_ROOT}/*FileSeq0.nema"
- "${GDCM_DATA_ROOT}/*FileSeq0.ima"
- )
-ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
- # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
- FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
- "${GDCM_DATA_ROOT}/*.acr"
- )
- FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
- "${GDCM_DATA_ROOT}/*.dcm"
- )
- FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
- "${GDCM_DATA_ROOT}/*.nema"
- )
- FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
- "${GDCM_DATA_ROOT}/*.ima"
- )
- SET(GDCM_DATA_IMAGES_GLOB
- ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
- ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
-
- FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
- "${GDCM_DATA_ROOT}/*FileSeq0.acr"
- )
- FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
- "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
- )
- FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
- "${GDCM_DATA_ROOT}/*FileSeq0.nema"
- )
- FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
- "${GDCM_DATA_ROOT}/*FileSeq0.ima"
- )
- SET(GDCM_DATA_SEQ_IMAGES_GLOB
- ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
- ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
-ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
+FILE(GLOB GDCM_DATA_IMAGES_GLOB
+ "${GDCM_DATA_ROOT}/*.acr"
+ "${GDCM_DATA_ROOT}/*.dcm"
+ "${GDCM_DATA_ROOT}/*.nema"
+ "${GDCM_DATA_ROOT}/*.ima"
+ )
# Black list of images known to break lots of readers (efilm, xmedcon ...):
SET(BLACK_LIST
-
# Multiframe Papyrus format image
# Just to remember this format exists, and is gdcm::File compliant
# (NOT gdcm::FileHelper ...)
)
ENDIF(BORLAND)
+# Create a specific list of dicom files that we know are part of a sequence
+SET(SEQ_LIST
+ "SIEMENS_MAGNETOM-12-MONO2-FileSeq[0-9].dcm"
+ )
+
# Add a special test that requires dciodvfy from dicom3tools
INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
# This is a GLOB expression, change it into a list separated with a comma and \n
SET(GDCM_DATA_IMAGES)
+SET(GDCM_DATA_SEQ_IMAGES)
FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
IF(DCIODVFY_FOUND)
STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
IF(NOT bad_dicom)
SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
- ENDIF(NOT bad_dicom)
-ENDFOREACH(filename)
-
-SET(GDCM_DATA_SEQ_IMAGES)
-FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
- GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
- STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
- IF(NOT bad_dicom)
- STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
-
- SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
+ # SEQ_LIST is a regular expression:
+ STRING(REGEX MATCH ${SEQ_LIST} is_seq ${filename_temp})
+ IF(is_seq)
+ SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp}\",")
+ ENDIF(is_seq)
ENDIF(NOT bad_dicom)
ENDFOREACH(filename)