set -u
SCRIPTNAME="$(basename "${0}")"
+# -------------------------------------------------
function error {
-echo "ERROR: $1"
-usage
-exit 1
+ echo "ERROR: $1"
+ usage
+ exit 1
}
+# -------------------------------------------------
DEFAULTRELEASESUFFIX="NONE"
DEFAULTNUMBEROFJOBS="10"
+# -------------------------------------------------
function usage {
-echo "${SCRIPTNAME} mac/main.mac njobs releasesuffix paramtogate"
-echo "default njobs = ${DEFAULTNUMBEROFJOBS}"
-echo "default releasesuffix = ${DEFAULTRELEASESUFFIX} (NONE means use Gate in PATH)"
+ echo "${SCRIPTNAME} mac/main.mac njobs releasesuffix paramtogate"
+ echo "default njobs = ${DEFAULTNUMBEROFJOBS}"
+ echo "default releasesuffix = ${DEFAULTRELEASESUFFIX} (NONE means use Gate in PATH)"
}
+# -------------------------------------------------
test $# -eq 0 && usage && exit 0
test -f ${JOBFILE} || error "can't find job file ${JOBFILE}"
if test "${RELEASESUFFIX}" = "${DEFAULTRELEASESUFFIX}"
then
- RELEASEDIR="NONE"
- which Gate 2>&1 >/dev/null || error "there is no Gate in the PATH"
+ RELEASEDIR="NONE"
+ which Gate 2>&1 >/dev/null || error "there is no Gate in the PATH"
else
- test -d ${RELEASEDIR} || error "invalid release dir ${RELEASEDIR}"
+ test -d ${RELEASEDIR} || error "invalid release dir ${RELEASEDIR}"
fi
MACRODIR=$(pwd)
test -d ${MACRODIR}/mac && test -d ${MACRODIR}/data || error "invalid path"
echo "Lets roll!!"
echo "runid is ${RUNID}"
-echo "qsub is $(which qsub)"
+
+QSUB=$(which qsub 2> /dev/null)
+# echo "qsub is $(which qsub)"
+test -z "${QSUB}" && QSUB="noqsub"
+if test "${QSUB}" = "noqsub"
+then
+ echo "qsub is not found. Simply run Gate on multiple cores."
+fi
+
test -z "${PARAM}" && echo "no param" || echo "param is ${PARAM}"
if test "$RELEASESUFFIX" = "$DEFAULTRELEASESUFFIX"
then
- echo "using $(which Gate)"
+ echo "Gate is $(which Gate)"
else
- echo "using release $(basename ${RELEASEDIR})"
+ echo "Gate release is $(basename ${RELEASEDIR})"
fi
echo "submitting ${NJOBS} jobs"
test -z "${PARAM}" || echo "param = ${PARAM}" >> "${PARAMFILE}"
while test $NJOBS -gt 0; do
- qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" \
- -v "PARAM=\"${PARAM}\",INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},SCRIPTDIR=${SCRIPTDIR},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
- "${JOBFILE}" || error "submission error"
- let NJOBS--
+
+ if test "${QSUB}" = "noqsub"
+ then
+ echo "Launching Gate log in ${OUTPUTDIR}/gate_${NJOBS}.log"
+ PARAM=\"${PARAM}\" INDEX=${NJOBS} INDEXMAX=${NJOBSMAX} SCRIPTDIR=${SCRIPTDIR} OUTPUTDIR=${OUTPUTDIR} RELEASEDIR=${RELEASEDIR} MACROFILE=${MACROFILE} MACRODIR=${MACRODIR} PBS_JOBID="local_${NJOBS}" bash "${JOBFILE}" > ${OUTPUTDIR}/gate_${NJOBS}.log &
+ else
+ qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" \
+ -v "PARAM=\"${PARAM}\",INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},SCRIPTDIR=${SCRIPTDIR},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
+ "${JOBFILE}" || error "submission error"
+ fi
+
+ let NJOBS--
done
echo "runid is ${RUNID}"