#include <QColorDialog>
#include <QAbstractEventDispatcher>
#include <QXmlStreamReader>
-
+
// vtk
#include <vtkLookupTable.h>
#include <vtkRenderWindow.h>
//------------------------------------------------------------------------------
vvToolROIManager::vvToolROIManager(vvMainWindowBase * parent, Qt::WindowFlags f):
- QWidget(parent->GetTab()),
+ QWidget(parent->GetTab()),
vvToolBase<vvToolROIManager>(parent),
Ui::vvToolROIManager()
{
// Store parent
mMainWindow = parent;
-
+
// Assume the initial tab ROI index is 2
mIndexFirstTab = 2;
mTree->clear();
mTree->header()->resizeSection(0, 30);
mGroupBoxROI->setEnabled(false);
-
+
// Disable "Load dicom" button -> not useful
frame_4->hide();
//------------------------------------------------------------------------------
-void vvToolROIManager::InitializeNewTool(bool ReadStateFlag)
+void vvToolROIManager::InitializeNewTool(bool ReadStateFlag)
{
// Check if we need to start a new tool or read in the state file to load
if (ReadStateFlag == false) {
// Read all information in the XML
ReadXMLInformation();
-
- // Check that a ROI is not already present
+
+ // Check that a ROI is not already present
mInitialImageIndex += mImageIndex;
if (mInitialImageIndex >= mMainWindow->GetSlicerManagers().size()) {
QMessageBox::warning(this, "ROIManager tool", QString("Image index %1 not found, abort.").arg(mInitialImageIndex));
close();
return;
}
-
+
// Set the attached image
mCurrentSlicerManager = mMainWindow->GetSlicerManagers()[mInitialImageIndex];
}
// Tab insertion, check that another tool does not already exist for this image
- std::vector<vvToolBaseBase*> & tools =
+ std::vector<vvToolBaseBase*> & tools =
vvToolManager::GetInstance()->GetToolCreatorFromName(GetToolName())->GetListOfTool();
if (tools.size() > 0) {
for(uint i=0; i<tools.size()-1; i++) { // current tool is last
// Display tool in the correct tab
QWidget * tab = qFindChild<QWidget*>(mMainWindow->GetTab(), "ROItab");
tab->layout()->addWidget(this);
-
+
// If not read in a file we start automatically the browser to load
// a roi file (binary image)
- if (ReadStateFlag) {
+ if (ReadStateFlag) {
mOpenFileBrowserFlag = false;
InputIsSelected(mCurrentSlicerManager);
mOpenFileBrowserFlag = true;
roi->GetROI()->GetDisplayColor()[2]*255));
brush.setStyle(Qt::SolidPattern);
w->setBackground(2, brush);
- w->setText(3, QString("%1").arg(roi->GetDepth()));
+ w->setText(3, QString("%1").arg(roi->GetDepth()));
roi->UpdateColor();
}
// Display the ROI
UpdateAllContours();
- UpdateAllROIStatus();
+ UpdateAllROIStatus();
// Connect event from mainwindow to this widget
- connect(mMainWindow, SIGNAL(AnImageIsBeingClosed(vvSlicerManager *)),
+ connect(mMainWindow, SIGNAL(AnImageIsBeingClosed(vvSlicerManager *)),
this, SLOT(AnImageIsBeingClosed(vvSlicerManager *)));
- connect(mMainWindow, SIGNAL(SelectedImageHasChanged(vvSlicerManager *)),
+ connect(mMainWindow, SIGNAL(SelectedImageHasChanged(vvSlicerManager *)),
this, SLOT(SelectedImageHasChanged(vvSlicerManager *)));
connect(mOpenBinaryButton, SIGNAL(clicked()), this, SLOT(Open()));
// connect(mOpenDicomButton, SIGNAL(clicked()), this, SLOT(OpenDicomImage()));
connect(mCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleROIToggled(bool)));
connect(mOpacitySlider, SIGNAL(valueChanged(int)), this, SLOT(OpacityChanged(int)));
connect(mChangeColorButton, SIGNAL(clicked()), this, SLOT(ChangeColor()));
- connect(mContourCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleContourROIToggled(bool)));
+ connect(mContourCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleContourROIToggled(bool)));
connect(mChangeContourColorButton, SIGNAL(clicked()), this, SLOT(ChangeContourColor()));
connect(mContourWidthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeContourWidth(int)));
connect(mDepthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeDepth(int)));
// Refuse if non 3D image
if (mCurrentImage->GetNumberOfDimensions() != 3) {
- QMessageBox::information(this,tr("Sorry only 3D yet"), tr("Sorry only 3D yet"));
- close();
- return;
+ QMessageBox::information(this,tr("Warning"), tr("Warning 3D ROI on a 4D image will results in some display bugs"));
+ //close();
+ //return;
}
// Change gui
mLabelInputInfo->setText(QString("%1").arg(m->GetFileName().c_str()));
- // Auto display browser to select new contours
+ // Auto display browser to select new contours
if (mOpenFileBrowserFlag) Open();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolROIManager::AnImageIsBeingClosed(vvSlicerManager * m)
{
- if (m == mCurrentSlicerManager) {
+ if (m == mCurrentSlicerManager) {
close();
return;
}
disconnect(mCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleROIToggled(bool)));
disconnect(mOpacitySlider, SIGNAL(valueChanged(int)), this, SLOT(OpacityChanged(int)));
disconnect(mChangeColorButton, SIGNAL(clicked()), this, SLOT(ChangeColor()));
- disconnect(mContourCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleContourROIToggled(bool)));
+ disconnect(mContourCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleContourROIToggled(bool)));
disconnect(mChangeContourColorButton, SIGNAL(clicked()), this, SLOT(ChangeContourColor()));
disconnect(mContourWidthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeContourWidth(int)));
disconnect(mDepthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeDepth(int)));
if (mCurrentSlicerManager == NULL) return;
if (m == NULL) return;
- if (m != mCurrentSlicerManager) hide();
+ if (m != mCurrentSlicerManager) hide();
else {
show();
}
//------------------------------------------------------------------------------
-void vvToolROIManager::Open()
+void vvToolROIManager::Open()
{
// Open images
QString Extensions = "Images or Dicom-Struct files ( *.mha *.mhd *.hdr *.his *.dcm RS*)";
//------------------------------------------------------------------------------
-void vvToolROIManager::OpenBinaryImage(QStringList & filename)
+void vvToolROIManager::OpenBinaryImage(QStringList & filename)
{
if (filename.size() == 0) return;
-
+
vvProgressDialog p("Reading ROI ...", true);
p.SetCancelButtonEnabled(false);
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
-
+
// For each selected file, open the image
- for(int i=0; i<filename.size(); i++) {
+ for(int i=0; i<filename.size(); i++) {
p.SetProgress(i, filename.size());
// Open Image
filenames.push_back(filename[i].toStdString());
reader->SetInputFilenames(filenames);
reader->Update(vvImageReader::IMAGE);
-
+
if (reader->GetLastError().size() != 0) {
std::cerr << "Error while reading " << filename[i].toStdString() << std::endl;
QString error = "Cannot open file \n";
QApplication::restoreOverrideCursor();
// Update the contours
- UpdateAllContours();
+ UpdateAllContours();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolROIManager::OpenDicomImage(std::string filename)
+void vvToolROIManager::OpenDicomImage(std::string filename)
{
// GUI selector of roi
vvMeshReader reader;
reader.SetFilename(filename);
-
+
vvStructSelector selector;
selector.SetStructures(reader.GetROINames());
selector.SetPropagationCheckBoxFlag(false);
-
- if (selector.exec()) {
+
+ if (selector.exec()) {
vvProgressDialog p("Reading ROI...", true);
p.SetCancelButtonEnabled(false);
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
// Loop on selected struct
std::vector<int> list = selector.getSelectedItems();
for (uint i=0; i<list.size(); i++) {
- p.SetProgress(i, list.size());
-
+ p.SetProgress(i, list.size());
+
clitk::DicomRTStruct2ImageFilter filter;
filter.SetCropMaskEnabled(true);
filter.SetImage(mCurrentImage);
- filter.SetROI(s->GetROIFromROINumber(list[i]));
+ filter.SetROI(s->GetROIFromROINumber(list[i]));
filter.SetWriteOutputFlag(false);
- filter.Update();
+ filter.Update();
// Get image
vvImage::Pointer binaryImage = vvImage::New();
binaryImage->AddVtkImage(filter.GetOutput());
-
+
// Add to gui
AddImage(binaryImage, s->GetROIFromROINumber(list[i])->GetName(), "", 0, true); // "" = no filename
mOpenedBinaryImageFilenames.push_back(filename.c_str());
QApplication::restoreOverrideCursor();
}
// Update the contours
- UpdateAllContours();
+ UpdateAllContours();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolROIManager::AddImage(vvImage * binaryImage,
- std::string name,
- std::string filename,
- double BG, bool modeBG)
+void vvToolROIManager::AddImage(vvImage * binaryImage,
+ std::string name,
+ std::string filename,
+ double BG, bool modeBG)
{
// Check Dimension
int dim = mCurrentImage->GetNumberOfDimensions();
QMessageBox::information(this,tr("Reading problem"),os.str().c_str());
return;
}
-
+
// Compute roi index
int n = mROIList.size();
-
+
// Compute the name of the new ROI
// std::ostringstream oss;
// oss << vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename));
// std::string name = oss.str();
-
+
// Set color
std::vector<double> color;
color.push_back(1);
// Add a new roi to the list
mROIList.push_back(roi);
-
+
// Set BG or FG mode
- if (modeBG)
+ if (modeBG)
roi->SetBackgroundValueLabelImage(BG);
- else
+ else
roi->SetForegroundValueLabelImage(BG);
-
+
// Change color
if (n<mDefaultLUTColor->GetNumberOfTableValues ()) {
double * color = mDefaultLUTColor->GetTableValue(n % mDefaultLUTColor->GetNumberOfTableValues ());
roi->SetDisplayColor(color[0], color[1], color[2]);
}
-
+
// Add a new roi actor
QSharedPointer<vvROIActor> actor = QSharedPointer<vvROIActor>(new vvROIActor);
actor->SetBGMode(modeBG);
actor->SetSlicerManager(mCurrentSlicerManager);
actor->Initialize(n+1); // depth is n+1 to start at 1
mROIActorsList.push_back(actor);
-
+
// CheckBox for "All"
if (actor->IsVisible()) mNumberOfVisibleROI++;
if (actor->IsContourVisible()) mNumberOfVisibleContourROI++;
-
+
// Add ROI in tree
mTreeWidgetList.push_back(QSharedPointer<QTreeWidgetItem>(new QTreeWidgetItem(mTree)));
QTreeWidgetItem * w = mTreeWidgetList.back().data();
w->setText(0, QString("%1").arg(roi->GetROINumber()));
w->setText(1, QString("%1").arg(roi->GetName().c_str()));
- w->setText(3, QString("%1").arg(actor->GetDepth()));
- QBrush brush(QColor(roi->GetDisplayColor()[0]*255,
- roi->GetDisplayColor()[1]*255,
+ w->setText(3, QString("%1").arg(actor->GetDepth()));
+ QBrush brush(QColor(roi->GetDisplayColor()[0]*255,
+ roi->GetDisplayColor()[1]*255,
roi->GetDisplayColor()[2]*255));
brush.setStyle(Qt::SolidPattern);
w->setBackground(2, brush);
mTree->resizeColumnToContents(0);
mTree->resizeColumnToContents(1);
- // Update
- UpdateAllROIStatus();
+ // Update
+ UpdateAllROIStatus();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolROIManager::UpdateAllContours()
+void vvToolROIManager::UpdateAllContours()
{
if (mCurrentSlicerManager == NULL) return;
// Render loaded ROIs (the first is sufficient)
}
// change the states
- disconnect(mCheckBoxShowAll, SIGNAL(stateChanged(int)), this, SLOT(AllVisibleROIToggled(int)));
+ disconnect(mCheckBoxShowAll, SIGNAL(stateChanged(int)), this, SLOT(AllVisibleROIToggled(int)));
disconnect(mContourCheckBoxShowAll, SIGNAL(toggled(bool)), this, SLOT(AllVisibleContourROIToggled(bool)));
if (nbVisible == nb) mCheckBoxShowAll->setCheckState(Qt::Checked);
else {
mCurrentROI = roi;
mCurrentROIActor = actor;
- // Warning -> avoid unuseful Render here by disconnect slider
+ // Warning -> avoid unuseful Render here by disconnect slider
// Update GUI
disconnect(mTree, SIGNAL(itemSelectionChanged()), this, SLOT(SelectedItemChangedInTree()));
disconnect(mCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleROIToggled(bool)));
disconnect(mOpacitySlider, SIGNAL(valueChanged(int)), this, SLOT(OpacityChanged(int)));
disconnect(mChangeColorButton, SIGNAL(clicked()), this, SLOT(ChangeColor()));
- disconnect(mContourCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleContourROIToggled(bool)));
+ disconnect(mContourCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleContourROIToggled(bool)));
disconnect(mChangeContourColorButton, SIGNAL(clicked()), this, SLOT(ChangeContourColor()));
disconnect(mContourWidthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeContourWidth(int)));
disconnect(mDepthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeDepth(int)));
connect(mCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleROIToggled(bool)));
connect(mOpacitySlider, SIGNAL(valueChanged(int)), this, SLOT(OpacityChanged(int)));
connect(mChangeColorButton, SIGNAL(clicked()), this, SLOT(ChangeColor()));
- connect(mContourCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleContourROIToggled(bool)));
+ connect(mContourCheckBoxShow, SIGNAL(toggled(bool)), this, SLOT(VisibleContourROIToggled(bool)));
connect(mChangeContourColorButton, SIGNAL(clicked()), this, SLOT(ChangeContourColor()));
connect(mContourWidthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeContourWidth(int)));
connect(mDepthSpinBox, SIGNAL(valueChanged(int)), this, SLOT(ChangeDepth(int)));
-
+
// Set the current color to the selected ROI name
mROInameLabel->setAutoFillBackground(true);// # This is important!!
// mROInameLabel->setStyleSheet("QLabel { background-color : red; color : blue; }");
(1-mCurrentROI->GetDisplayColor()[2])*255);
palette->setColor(QPalette::WindowText,colorFG);
palette->setColor(QPalette::Background, color);
- mROInameLabel->setPalette(*palette);
+ mROInameLabel->setPalette(*palette);
// Enable the group box (in case no selection before)
mGroupBoxROI->setEnabled(true);
if (b == mCurrentROIActor->IsVisible()) return; // nothing to do
mCurrentROIActor->SetVisible(b);
UpdateAllROIStatus();
- mCurrentSlicerManager->Render();
+ mCurrentSlicerManager->Render();
}
//------------------------------------------------------------------------------
if (mCurrentROIActor->IsContourVisible() == b) return; // nothing to do
mCurrentROIActor->SetContourVisible(b);
mCurrentROIActor->UpdateColor();
- mCurrentSlicerManager->Render();
+ mCurrentSlicerManager->Render();
}
//------------------------------------------------------------------------------
if (mCurrentROIActor == NULL) return;
mCurrentROIActor->SetOpacity((double)v/100.0);
mCurrentROIActor->UpdateColor();
- mCurrentSlicerManager->Render();
+ mCurrentSlicerManager->Render();
}
//------------------------------------------------------------------------------
if (status) mCheckBoxShowAll->setCheckState(Qt::Checked);
else mCheckBoxShowAll->setCheckState(Qt::Unchecked);
mCheckBoxShow->setChecked(status);
- mCurrentSlicerManager->Render();
+ mCurrentSlicerManager->Render();
}
//------------------------------------------------------------------------------
bool status = false;
if ((mContourCheckBoxShowAll->checkState() == Qt::Checked) ||
(mContourCheckBoxShowAll->checkState() == Qt::PartiallyChecked)) status = true;
- // Update current
+ // Update current
for(uint i=0; i<mROIActorsList.size(); i++) {
mROIActorsList[i]->SetContourVisible(status);
}
if (status) mContourCheckBoxShowAll->setCheckState(Qt::Checked);
else mContourCheckBoxShowAll->setCheckState(Qt::Unchecked);
mContourCheckBoxShow->setChecked(status);
- mCurrentSlicerManager->Render();
+ mCurrentSlicerManager->Render();
}
//------------------------------------------------------------------------------
void vvToolROIManager::ChangeContourColor() {
if (mCurrentROIActor == NULL) return;
QColor color;
- color.setRgbF(mCurrentROIActor->GetContourColor()[0],
- mCurrentROIActor->GetContourColor()[1],
+ color.setRgbF(mCurrentROIActor->GetContourColor()[0],
+ mCurrentROIActor->GetContourColor()[1],
mCurrentROIActor->GetContourColor()[2]);
// QColorDialog d(color);
QColor c = QColorDialog::getColor(color, this, "Choose the contour color");
void vvToolROIManager::ChangeDepth(int n) {
if (mCurrentROIActor == NULL) return;
mCurrentROIActor->SetDepth(n);
- // mCurrentROIActor->UpdateImage(); // FIXME
+ // mCurrentROIActor->UpdateImage(); // FIXME
mCurrentSlicerManager->Render();
QList<QTreeWidgetItem *> l = mTree->selectedItems();
QTreeWidgetItem * w = l[0];
mCurrentROIActor->SetVisible(false);
mCurrentROIActor->SetContourVisible(false);
mCurrentSlicerManager->Render();
-
+
// Reload image
vvImageReader::Pointer reader = vvImageReader::New();
reader->SetInputFilename(mCurrentROI->GetFilename());
reader->Update(vvImageReader::IMAGE);
if (reader->GetLastError() != "") {
// No message just ignore (because can be from dicom)
- // QMessageBox::information(mMainWindowBase, tr("Sorry, error. Could not reload"),
+ // QMessageBox::information(mMainWindowBase, tr("Sorry, error. Could not reload"),
// reader->GetLastError().c_str());
return;
}
mCurrentROIActor->UpdateImage();
mCurrentROIActor->SetVisible(visible);
mCurrentROIActor->SetContourVisible(cvisible);
- mCurrentSlicerManager->Render();
+ mCurrentSlicerManager->Render();
}
//------------------------------------------------------------------------------
m_XmlWriter->writeAttribute("Opacity", QString("%1").arg(roi->GetOpacity()));
m_XmlWriter->writeAttribute("Depth", QString("%1").arg(roi->GetDepth()));
m_XmlWriter->writeEndElement();
-
+
m_XmlWriter->writeStartElement("Contour");
m_XmlWriter->writeAttribute("Red", QString("%1").arg(roi->GetContourColor()[0]));
m_XmlWriter->writeAttribute("Green",QString("%1").arg(roi->GetContourColor()[1]));
//------------------------------------------------------------------------------
-void vvToolROIManager::ReadXMLInformation()
+void vvToolROIManager::ReadXMLInformation()
{
std::string value="";
mInitialImageIndex = -1;
- while (!(m_XmlReader->isEndElement() && value == GetToolName().toStdString())) {
+ while (!(m_XmlReader->isEndElement() && value == GetToolName().toStdString())) {
m_XmlReader->readNext();
value = m_XmlReader->qualifiedName().toString().toStdString();
-
- if (value == "Image_Index")
+
+ if (value == "Image_Index")
mInitialImageIndex = m_XmlReader->readElementText().toInt();
-
+
if (m_XmlReader->isStartElement()) {
if (value == "ROI") {
ReadXMLInformation_ROI();
- }
+ }
}
}
}
//------------------------------------------------------------------------------
-void vvToolROIManager::ReadXMLInformation_ROI()
+void vvToolROIManager::ReadXMLInformation_ROI()
{
QString s;
std::string value="";
int width = 1;
int depth=1;
- while (!(m_XmlReader->isEndElement() && value == "ROI")) {
+ while (!(m_XmlReader->isEndElement() && value == "ROI")) {
m_XmlReader->readNext();
value = m_XmlReader->qualifiedName().toString().toStdString();
if (value == "Image") {
s = m_XmlReader->readElementText();
}
-
+
if (value == "Overlay" && m_XmlReader->isStartElement()) {
QXmlStreamAttributes attributes = m_XmlReader->attributes();
if (!m_XmlReader->hasError())
}
param->SetOverlayColor(r,g,b);
param->SetVisible(visible);
- param->SetOpacity(opacity);
- param->SetDepth(depth);
+ param->SetOpacity(opacity);
+ param->SetDepth(depth);
param->SetContourColor(cr,cg,cb);
param->SetContourVisible(cvisible);
git://git.creatis.insa-lyon.fr / clitk.git / commitdiff