-/*=========================================================================\r
- \r
- Program: gdcm\r
- Module: $RCSfile: Bmp2Dcm.cxx,v $\r
- Language: C++\r
- Date: $Date: 2007/10/30 16:42:58 $\r
- Version: $Revision: 1.3 $\r
- \r
- Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de\r
- l'Image). All rights reserved. See Doc/License.txt or\r
- http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.\r
- \r
- This software is distributed WITHOUT ANY WARRANTY; without even\r
- the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR\r
- PURPOSE. See the above copyright notices for more information.\r
- \r
-=========================================================================*/\r
-\r
-#include "gdcmArgMgr.h"\r
-#include "gdcmDirList.h"\r
-#include "gdcmDebug.h"\r
-#include "gdcmUtil.h"\r
-\r
-#include <vtkImageData.h>\r
-\r
-#include <vtkBMPReader.h>\r
-#include <vtkBMPWriter.h>\r
-#include "vtkGdcmWriter.h"\r
-\r
-#include <vtkImageExtractComponents.h>\r
-#include <vtkPointData.h>\r
-#include <vtkDataArray.h>\r
-\r
-#include <stdio.h>\r
-#include <string.h>\r
-#include <stdlib.h>\r
-#include <math.h>\r
-\r
-//---------------------------------------------------------------------------\r
-\r
-int main( int argc, char *argv[] )\r
-{\r
- START_USAGE(usage)\r
- "\n Bmp2Dcm :\n ", \r
- "usage: Bmp2Dcm {filein=inputFileName|dirin=inputDirectoryName} ",\r
- " [studyUID = ] [patName = ] [debug] ", \r
- " ",\r
- " inputFileName : Name of the (single) file user wants to transform ",\r
- " inputDirectoryName : user wants to transform *all* the files ",\r
- " studyUID : *aware* user wants to add the serie ",\r
- " to an already existing study ", \r
- " verbose : user wants to run the program in 'verbose mode' ", \r
- " debug : *developper* wants to run the program in 'debug mode' ",\r
- \r
- FINISH_USAGE\r
-\r
- // ----- Initialize Arguments Manager ------\r
- \r
- GDCM_NAME_SPACE::ArgMgr *am = new GDCM_NAME_SPACE::ArgMgr(argc, argv);\r
- \r
- if (am->ArgMgrDefined("usage") || argc == 1) \r
- {\r
- am->ArgMgrUsage(usage); // Display 'usage'\r
- delete am;\r
- return 0;\r
- }\r
-\r
- if (am->ArgMgrDefined("debug"))\r
- GDCM_NAME_SPACE::Debug::DebugOn();\r
-\r
- bool verbose = ( 0 != am->ArgMgrDefined("verbose") );\r
-\r
- const char *fileName = am->ArgMgrGetString("filein");\r
- const char *dirName = am->ArgMgrGetString("dirin");\r
-\r
- if ( (fileName == 0 && dirName == 0)\r
- ||\r
- (fileName != 0 && dirName != 0) )\r
- {\r
- std::cout <<std::endl\r
- << "Either 'filein=' or 'dirin=' must be present;"\r
- << std::endl << "Not both" << std::endl;\r
- am->ArgMgrUsage(usage); // Display 'usage'\r
- delete am;\r
- return 0;\r
- }\r
-\r
- std::string patName = am->ArgMgrGetString("patname", dirName);\r
- bool userDefinedStudy = ( 0 != am->ArgMgrDefined("studyUID") );\r
- const char *studyUID;\r
- if (userDefinedStudy)\r
- studyUID = am->ArgMgrGetString("studyUID");\r
-\r
- // not described *on purpose* in the Usage !\r
- bool userDefinedSerie = ( 0 != am->ArgMgrDefined("serieUID") );\r
- const char *serieUID;\r
- if(userDefinedSerie)\r
- serieUID = am->ArgMgrGetString("serieUID");\r
-\r
- /* if unused Param we give up */\r
- if ( am->ArgMgrPrintUnusedLabels() )\r
- {\r
- am->ArgMgrUsage(usage);\r
- delete am;\r
- return 0;\r
- }\r
-\r
- delete am; // ------ we don't need Arguments Manager any longer ------\r
-\r
-\r
- // ----- Begin Processing -----\r
-\r
- int *dim;\r
- std::string nomFich;\r
-\r
- if ( fileName != 0 ) // ====== Deal with a single file ======\r
- {\r
- vtkBMPReader* Reader = vtkBMPReader::New();\r
- if ( Reader->CanReadFile(fileName ) == 0) {\r
- // skip 'non BMP' files\r
- Reader->Delete();\r
- if (verbose)\r
- std::cout << "Sorry, [" << fileName << "] is not a BMP file!" << std::endl;\r
- return 0;\r
- }\r
-\r
- if (verbose)\r
- std::cout << "deal with [" << fileName << "]" << std::endl;\r
- //Read BMP file\r
-\r
- Reader->SetFileName(fileName);\r
- Reader->Update();\r
-\r
- vtkImageExtractComponents* Red = vtkImageExtractComponents::New();\r
- Red->SetInput(Reader->GetOutput());\r
- Red->SetComponents(0);\r
- Red->Update();\r
-\r
- vtkGdcmWriter* Writer = vtkGdcmWriter::New();\r
- Writer->SetInput(Red->GetOutput());\r
- nomFich = "";\r
- nomFich = nomFich+fileName+".acr"; \r
- Writer->Write();\r
- \r
- Reader->Delete();\r
- Red->Delete();\r
- Writer->Delete();\r
- \r
- }\r
- else // ====== Deal with a (single Patient) Directory ======\r
- { \r
- \r
- if ( ! GDCM_NAME_SPACE::DirList::IsDirectory(dirName) )\r
- {\r
- std::cout << "KO : [" << dirName << "] is not a Directory." << std::endl;\r
- return 0;\r
- }\r
- else\r
- {\r
- if (verbose)\r
- std::cout << "OK : [" << dirName << "] is a Directory." << std::endl;\r
- } \r
- std::string strStudyUID;\r
- std::string strSerieUID;\r
-\r
- if (userDefinedStudy)\r
- strSerieUID = studyUID;\r
- else\r
- strStudyUID = GDCM_NAME_SPACE::Util::CreateUniqueUID();\r
- \r
- if (userDefinedStudy)\r
- strSerieUID = serieUID;\r
- else\r
- strStudyUID = GDCM_NAME_SPACE::Util::CreateUniqueUID(); \r
-\r
- if(verbose)\r
- std::cout << "dirName [" << dirName << "]" << std::endl;\r
- \r
- GDCM_NAME_SPACE::DirList dirList(dirName,1); // gets recursively the file list\r
- GDCM_NAME_SPACE::DirListType fileList = dirList.GetFilenames();\r
-\r
- for( GDCM_NAME_SPACE::DirListType::iterator it = fileList.begin();\r
- it != fileList.end();\r
- ++it )\r
- {\r
- if ( GDCM_NAME_SPACE::Util::GetName((*it)).c_str()[0] == '.' ) \r
- {\r
- // skip hidden files\r
- continue;\r
- }\r
- \r
- vtkBMPReader* Reader = vtkBMPReader::New();\r
- \r
- if ( Reader->CanReadFile(it->c_str() ) == 0) {\r
- // skip 'non BMP' files \r
- Reader->Delete();\r
- continue;\r
- }\r
- \r
- if (verbose)\r
- std::cout << "deal with [" << it->c_str() << "]" << std::endl; \r
- \r
- Reader->SetFileName(it->c_str()); \r
- Reader->Update();\r
- \r
- dim=Reader->GetOutput()->GetDimensions();\r
- vtkImageExtractComponents* Red = vtkImageExtractComponents::New();\r
- Red->SetInput(Reader->GetOutput());\r
- Red->SetComponents(0);\r
- Red->Update();\r
-\r
- // At least, created files will look like a Serie from a single Study ... \r
- GDCM_NAME_SPACE::File *f = GDCM_NAME_SPACE::File::New();\r
- f->InsertEntryString(strStudyUID, 0x0020, 0x000d, "UI"); \r
- f->InsertEntryString(strSerieUID, 0x0020, 0x000e, "UI");\r
- f->InsertEntryString(patName, 0x0010, 0x0010, "PN"); // Patient's Name \r
-\r
- vtkGdcmWriter* Writer = vtkGdcmWriter::New();\r
- Writer->SetInput(Red->GetOutput());\r
- nomFich = "";\r
- nomFich = nomFich+it->c_str()+".acr";\r
- Writer->SetFileName(nomFich.c_str());\r
- Writer->SetGdcmFile(f);\r
- Writer->Write();\r
- \r
- f->Delete(); \r
- \r
- }\r
- } \r
- return 0; \r
-}\r
+/*=========================================================================
+
+ Program: gdcm
+ Module: $RCSfile: Bmp2Dcm.cxx,v $
+ Language: C++
+ Date: $Date: 2008/01/28 12:47:07 $
+ Version: $Revision: 1.4 $
+
+ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
+ l'Image). All rights reserved. See Doc/License.txt or
+ http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the above copyright notices for more information.
+
+=========================================================================*/
+
+#include "gdcmArgMgr.h"
+#include "gdcmDirList.h"
+#include "gdcmDebug.h"
+#include "gdcmUtil.h"
+
+#include <vtkImageData.h>
+
+#include <vtkBMPReader.h>
+#include <vtkBMPWriter.h>
+#include "vtkGdcmWriter.h"
+
+#include <vtkImageExtractComponents.h>
+#include <vtkPointData.h>
+#include <vtkDataArray.h>
+
+#include <stdio.h>
+#include <string.h>
+#include <stdlib.h>
+#include <math.h>
+
+//---------------------------------------------------------------------------
+
+int main( int argc, char *argv[] )
+{
+ START_USAGE(usage)
+ "\n Bmp2Dcm :\n ",
+ "usage: Bmp2Dcm {filein=inputFileName|dirin=inputDirectoryName} ",
+ " [studyUID = ] [patName = ] [debug] ",
+ " ",
+ " inputFileName : Name of the (single) file user wants to transform ",
+ " inputDirectoryName : user wants to transform *all* the files ",
+ " studyUID : *aware* user wants to add the serie ",
+ " to an already existing study ",
+ " verbose : user wants to run the program in 'verbose mode' ",
+ " debug : *developper* wants to run the program in 'debug mode' ",
+
+ FINISH_USAGE
+
+ // ----- Initialize Arguments Manager ------
+
+ GDCM_NAME_SPACE::ArgMgr *am = new GDCM_NAME_SPACE::ArgMgr(argc, argv);
+
+ if (am->ArgMgrDefined("usage") || argc == 1)
+ {
+ am->ArgMgrUsage(usage); // Display 'usage'
+ delete am;
+ return 0;
+ }
+
+ if (am->ArgMgrDefined("debug"))
+ GDCM_NAME_SPACE::Debug::DebugOn();
+
+ bool verbose = ( 0 != am->ArgMgrDefined("verbose") );
+
+ const char *fileName = am->ArgMgrGetString("filein");
+ const char *dirName = am->ArgMgrGetString("dirin");
+
+ if ( (fileName == 0 && dirName == 0)
+ ||
+ (fileName != 0 && dirName != 0) )
+ {
+ std::cout <<std::endl
+ << "Either 'filein=' or 'dirin=' must be present;"
+ << std::endl << "Not both" << std::endl;
+ am->ArgMgrUsage(usage); // Display 'usage'
+ delete am;
+ return 0;
+ }
+
+ std::string patName = am->ArgMgrGetString("patname", dirName);
+ bool userDefinedStudy = ( 0 != am->ArgMgrDefined("studyUID") );
+ const char *studyUID;
+ if (userDefinedStudy)
+ studyUID = am->ArgMgrGetString("studyUID");
+
+ // not described *on purpose* in the Usage !
+ bool userDefinedSerie = ( 0 != am->ArgMgrDefined("serieUID") );
+ const char *serieUID;
+ if(userDefinedSerie)
+ serieUID = am->ArgMgrGetString("serieUID");
+
+ /* if unused Param we give up */
+ if ( am->ArgMgrPrintUnusedLabels() )
+ {
+ am->ArgMgrUsage(usage);
+ delete am;
+ return 0;
+ }
+
+ delete am; // ------ we don't need Arguments Manager any longer ------
+
+
+ // ----- Begin Processing -----
+
+ int *dim;
+ std::string nomFich;
+
+ if ( fileName != 0 ) // ====== Deal with a single file ======
+ {
+ vtkBMPReader* Reader = vtkBMPReader::New();
+ if ( Reader->CanReadFile(fileName ) == 0) {
+ // skip 'non BMP' files
+ Reader->Delete();
+ if (verbose)
+ std::cout << "Sorry, [" << fileName << "] is not a BMP file!" << std::endl;
+ return 0;
+ }
+
+ if (verbose)
+ std::cout << "deal with [" << fileName << "]" << std::endl;
+ //Read BMP file
+
+ Reader->SetFileName(fileName);
+ Reader->Update();
+
+ vtkImageExtractComponents* Red = vtkImageExtractComponents::New();
+ Red->SetInput(Reader->GetOutput());
+ Red->SetComponents(0);
+ Red->Update();
+
+ vtkGdcmWriter* Writer = vtkGdcmWriter::New();
+ Writer->SetInput(Red->GetOutput());
+ nomFich = "";
+ nomFich = nomFich+fileName+".acr";
+ Writer->Write();
+
+ Reader->Delete();
+ Red->Delete();
+ Writer->Delete();
+
+ }
+ else // ====== Deal with a (single Patient) Directory ======
+ {
+
+ if ( ! GDCM_NAME_SPACE::DirList::IsDirectory(dirName) )
+ {
+ std::cout << "KO : [" << dirName << "] is not a Directory." << std::endl;
+ return 0;
+ }
+ else
+ {
+ if (verbose)
+ std::cout << "OK : [" << dirName << "] is a Directory." << std::endl;
+ }
+ std::string strStudyUID;
+ std::string strSerieUID;
+
+ if (userDefinedStudy)
+ strSerieUID = studyUID;
+ else
+ strStudyUID = GDCM_NAME_SPACE::Util::CreateUniqueUID();
+
+ if (userDefinedStudy)
+ strSerieUID = serieUID;
+ else
+ strStudyUID = GDCM_NAME_SPACE::Util::CreateUniqueUID();
+
+ if(verbose)
+ std::cout << "dirName [" << dirName << "]" << std::endl;
+
+ GDCM_NAME_SPACE::DirList dirList(dirName,1); // gets recursively the file list
+ GDCM_NAME_SPACE::DirListType fileList = dirList.GetFilenames();
+
+ for( GDCM_NAME_SPACE::DirListType::iterator it = fileList.begin();
+ it != fileList.end();
+ ++it )
+ {
+ if ( GDCM_NAME_SPACE::Util::GetName((*it)).c_str()[0] == '.' )
+ {
+ // skip hidden files
+ continue;
+ }
+
+ vtkBMPReader* Reader = vtkBMPReader::New();
+
+ if ( Reader->CanReadFile(it->c_str() ) == 0) {
+ // skip 'non BMP' files
+ Reader->Delete();
+ continue;
+ }
+
+ if (verbose)
+ std::cout << "deal with [" << it->c_str() << "]" << std::endl;
+
+ Reader->SetFileName(it->c_str());
+ Reader->Update();
+
+ dim=Reader->GetOutput()->GetDimensions();
+ vtkImageExtractComponents* Red = vtkImageExtractComponents::New();
+ Red->SetInput(Reader->GetOutput());
+ Red->SetComponents(0);
+ Red->Update();
+
+ // At least, created files will look like a Serie from a single Study ...
+ GDCM_NAME_SPACE::File *f = GDCM_NAME_SPACE::File::New();
+ f->InsertEntryString(strStudyUID, 0x0020, 0x000d, "UI");
+ f->InsertEntryString(strSerieUID, 0x0020, 0x000e, "UI");
+ f->InsertEntryString(patName, 0x0010, 0x0010, "PN"); // Patient's Name
+
+ vtkGdcmWriter* Writer = vtkGdcmWriter::New();
+ Writer->SetInput(Red->GetOutput());
+ nomFich = "";
+ nomFich = nomFich+it->c_str()+".acr";
+ Writer->SetFileName(nomFich.c_str());
+ Writer->SetGdcmFile(f);
+ Writer->Write();
+
+ f->Delete();
+
+ }
+ }
+ return 0;
+}
projects / gdcm.git / commitdiff