version "1.0"
purpose "Region growing from a seed point using various types of conditions to control the growing"
-option "config" - "Config file" string no
-option "verbose" v "Verbose" flag off
+option "config" - "Config file" string no
+option "verbose" v "Verbose" flag off
section "I/O"
-option "input" i "Input image filename" string yes
-option "output" o "Output image filename" string yes
+option "input" i "Input image filename" string yes
+option "output" o "Output image filename" string yes
section "Parameters"
-option "type" t "Region growing filter type: 0=threshold , 1=neighborhood-threshold , 2=confidence , 3= locally-adaptive-threshold, 4= explosion-controlled-threshold" int no default="0"
-option "lower" l "Lower threshold value" double no default="310"
-option "upper" u "Upper threshold value" double no default="4000"
-option "maxUpper" - "4: Maximum upper threshold value" double no default="2000"
-option "minLower" - "4: Minimum lower threshold value" double no default="-1000"
-option "step" - "4: Threshold step size" double no default="64.0"
-option "minStep" - "4: Minimum threshold step size" double no default="1"
-option "adaptLower" - "3,4: (locally) adapt lower thresholding" flag off
-option "adaptUpper" - "3,4: (locally) adapt upper thresholding" flag off
-option "multiplier" m "2-4: (2-3) accept if within mean+-mutiplier*SD, (4) explosion if size increases multiplier times" double no default="2.0"
-option "seed" s "Seed index postion (in voxels)" int multiple no default="0"
-option "seedRadius" - "Radius used for seed dilatation(in voxel)" int multiple no default="0"
-option "pad" p "The replace padding value" double no default="1.0"
-option "radius" r "1-3: The radius of the neighborhood" int no multiple default="1"
-option "maxSD" - "3: Limit to SD" double no
-option "full" - "4: use full connectivity (not implemented yet)" flag off
-option "iter" - "2: Iterations" int no default="5"
-
+option "type" t "Region growing filter type: 0=threshold , 1=neighborhood-threshold , 2=confidence , 3=locally-adaptive-threshold, 4=explosion-controlled-threshold" int no default="0"
+option "lower" l "Lower threshold value" double no default="310"
+option "upper" u "Upper threshold value" double no default="4000"
+option "seed" s "Seed index postion (in voxels)" int no default="0" multiple
+option "seedRadius" - "Radius used for seed dilatation(in voxel)" int no default="0" multiple
+option "pad" p "The replace padding value" double no default="1.0"
+option "radius" r "1-3: The radius of the neighborhood" int no default="1" multiple
+option "iter" - "2: Iterations" int no default="5"
+option "multiplier" m "2-4: (2-3) accept if within mean+-mutiplier*SD, (4) explosion if size increases multiplier times" double no default="2.0"
+option "maxSD" - "3: Limit to SD" double no
+option "adaptLower" - "3,4: (locally) adapt lower thresholding" flag off
+option "adaptUpper" - "3,4: (locally) adapt upper thresholding" flag off
+option "maxUpper" - "4: Maximum upper threshold value" double no default="2000"
+option "minLower" - "4: Minimum lower threshold value" double no default="-1000"
+option "step" - "4: Threshold step size" double no default="64.0"
+option "minStep" - "4: Minimum threshold step size" double no default="1"
+option "full" - "4: use full connectivity (not implemented yet)" flag off
+