/*=========================================================================
- Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+Program: vv http://www.creatis.insa-lyon.fr/rio/vv
- Authors belong to:
- - University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://www.centreleonberard.fr
- - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+Authors belong to:
+- University of LYON http://www.universite-lyon.fr/
+- Léon Bérard cancer center http://www.centreleonberard.fr
+- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
- This software is distributed WITHOUT ANY WARRANTY; without even
- the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- PURPOSE. See the copyright notices for more information.
+This software is distributed WITHOUT ANY WARRANTY; without even
+the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+PURPOSE. See the copyright notices for more information.
- It is distributed under dual licence
+It is distributed under dual licence
- - BSD See included LICENSE.txt file
- - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+- BSD See included LICENSE.txt file
+- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
===========================================================================**/
#include <algorithm>
/*Data Tree values
- 0,Qt::UserRole full filename
- 1,Qt::CheckStateRole checkbutton UL View
- 1,Qt::UserRole overlay, fusion or vector
- 2,Qt::CheckStateRole checkbutton UR View
- 3,Qt::CheckStateRole checkbutton DL View
- 4,Qt::CheckStateRole checkbutton DR View
- 5,0 short filename
- 5,Qt::UserRole mSlicerManager id*/
+0,Qt::UserRole full filename
+1,Qt::CheckStateRole checkbutton UL View
+1,Qt::UserRole overlay, fusion or vector
+2,Qt::CheckStateRole checkbutton UR View
+3,Qt::CheckStateRole checkbutton DL View
+4,Qt::CheckStateRole checkbutton DR View
+5,0 short filename
+5,Qt::UserRole mSlicerManager id*/
//------------------------------------------------------------------------------
vvMainWindow::vvMainWindow():vvMainWindowBase()
this->setContextMenuPolicy(Qt::CustomContextMenu);
contextActions.resize(0);
QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
- tr("O&pen new Image"));
+ tr("O&pen new Image"));
actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
contextActions.push_back(actionOpen_new_image);
contextMenu.addSeparator();
QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
- tr("Close Current Image"));
+ tr("Close Current Image"));
connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
contextActions.push_back(actionClose_Image);
QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
- tr("Reload Current Image"));
+ tr("Reload Current Image"));
connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
contextActions.push_back(actionReload_image);
QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
- tr("Save Current Image"));
+ tr("Save Current Image"));
connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
contextActions.push_back(actionSave_image);
QAction* actionSave_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
- tr("Save Current State"));
+ tr("Save Current State"));
connect(actionSave_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
contextActions.push_back(actionSave_state);
QAction* actionRead_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
- tr("Read Saved State"));
+ tr("Read Saved State"));
connect(actionRead_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
contextActions.push_back(actionRead_state);
contextMenu.addSeparator();
QAction* actionResetMatrix = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/identity.png")),
- tr("Reset transformation to identity"));
+ tr("Reset transformation to identity"));
connect(actionResetMatrix, SIGNAL(triggered()), this,SLOT(ResetTransformationToIdentity()));
// TRIAL DS
// m->setObjectName(QString::fromUtf8("TOTOTO"));
contextMenu.addMenu(m);
QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
- tr("BIDON"));
+ tr("BIDON"));
QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
- tr("BIDON2"));
+ tr("BIDON2"));
m->addAction(a);
m->addAction(b);
connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
- SLOT(DisplayChanged(QTreeWidgetItem*, int)));
+ SLOT(DisplayChanged(QTreeWidgetItem*, int)));
connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int,int,double,double)),
- this,SLOT(SetOverlayProperty(int,int,double,double)));
+ this,SLOT(SetOverlayProperty(int,int,double,double)));
connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double, bool)),
- this,SLOT(SetFusionProperty(int,int,int,double,double, bool)));
+ this,SLOT(SetFusionProperty(int,int,int,double,double, bool)));
connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
connect(overlayPanel,SIGNAL(FusionSequencePropertyUpdated(int, bool, unsigned int, bool)),
- this,SLOT(SetFusionSequenceProperty(int, bool,unsigned int, bool)));
+ this,SLOT(SetFusionSequenceProperty(int, bool,unsigned int, bool)));
playMode = 0;//pause
bool ok;
int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
- mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
+ mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
if (ok) {
vvMidPosition midp;
midp.slicer_manager = mSlicerManagers[index];
cButton->setToolTip(tr("close image"));
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
//------------------------------------------------------------------------------
void vvMainWindow::AddDCStructContour(int index, QString file)
{
- vvMeshReader reader;
- reader.SetFilename(file.toStdString());
- vvStructSelector selector;
- selector.SetStructures(reader.GetROINames());
- if (!mSlicerManagers[index]->GetVF().IsNull())
- selector.EnablePropagationCheckBox();
- if (selector.exec()) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- reader.SetSelectedItems(selector.getSelectedItems());
- reader.SetImage(mSlicerManagers[index]->GetImage());
- if (selector.PropagationEnabled())
- reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
- reader.Update();
- std::vector<vvMesh::Pointer> contours=reader.GetOutput();
- for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
- i!=contours.end(); i++)
- AddContour(index,*i,selector.PropagationEnabled());
- QApplication::restoreOverrideCursor();
- }
+ vvMeshReader reader;
+ reader.SetFilename(file.toStdString());
+ vvStructSelector selector;
+ selector.SetStructures(reader.GetROINames());
+ if (!mSlicerManagers[index]->GetVF().IsNull())
+ selector.EnablePropagationCheckBox();
+ if (selector.exec()) {
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ reader.SetSelectedItems(selector.getSelectedItems());
+ reader.SetImage(mSlicerManagers[index]->GetImage());
+ if (selector.PropagationEnabled())
+ reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
+ reader.Update();
+ std::vector<vvMesh::Pointer> contours=reader.GetOutput();
+ for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
+ i!=contours.end(); i++)
+ AddContour(index,*i,selector.PropagationEnabled());
+ QApplication::restoreOverrideCursor();
+ }
}
//------------------------------------------------------------------------------
if (!mSlicerManagers[index]->GetVF().IsNull()) {
bool ok;
int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
- mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
+ mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
if (ok) {
WarpImage(mSlicerManagers[index],ref);
}
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
QFileInfo info(selected_slicer->GetFileName().c_str());
vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
- reference_phase,this);
+ reference_phase,this);
if (warp.ComputeWarpedImage()) {
AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
for (int i = 0; i < files.size(); i++) {
itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
reader->SetFileName(files[i].toStdString().c_str());
reader->ReadImageInformation();
if (reader) {
currentSpacing[j] = reader->GetSpacing(j);
currentSize[j] = reader->GetDimensions(j);
} else if (currentDim != reader->GetNumberOfDimensions()
- || currentSpacing[j] != reader->GetSpacing(j)
- || currentSize[j] != (int)reader->GetDimensions(j)
- || currentOrigin[j] != reader->GetOrigin(j)) {
- QString error = "Cannot read file (too different from others ";
- error += files[i].toStdString().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- IsOk = false;
- break;
+ || currentSpacing[j] != reader->GetSpacing(j)
+ || currentSize[j] != (int)reader->GetDimensions(j)
+ || currentOrigin[j] != reader->GetOrigin(j)) {
+ QString error = "Cannot read file (too different from others ";
+ error += files[i].toStdString().c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ IsOk = false;
+ break;
}
}
if (IsOk)
progress.SetProgress(i,fileSize);
qApp->processEvents();
- for (unsigned int j = 0; j < nSlices[i]; j++) {
+ for (unsigned int j = 0; j < nSlices[i]; j++) {
//read the image and put it in mSlicerManagers
vvSlicerManager* imageManager = new vvSlicerManager(4);
qApp->processEvents();
SetImageSucceed = imageManager->SetImages(files,filetype, number);
}
- if (!SetImageSucceed) {
+ if (!SetImageSucceed) {
QApplication::restoreOverrideCursor();
QString error = "Cannot open file \n";
error += imageManager->GetLastError().c_str();
item->setToolTip(COLUMN_IMAGE_NAME, imageManager->GetListOfAbsoluteFilePathInOneString("image").c_str());
qApp->processEvents();
- //Create the buttons for reload and close
+ //Create the buttons for reload and close
qApp->processEvents();
QTreePushButton* cButton = new QTreePushButton;
cButton->setItem(item);
cButton->setToolTip(tr("close image"));
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
rButton->setToolTip(tr("reload image"));
rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
DataTree->addTopLevelItem(item);
DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
- connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
- this,SLOT(CurrentImageChanged(std::string)));
+ connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
+ this,SLOT(CurrentImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
- this, SLOT(CurrentPickedImageChanged(std::string)));
+ this, SLOT(CurrentPickedImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
- this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
+ this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
- this, SLOT(VectorChanged(int,double,double,double, double)));
+ this, SLOT(VectorChanged(int,double,double,double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
- this, SLOT(OverlayChanged(int,double,double)));
+ this, SLOT(OverlayChanged(int,double,double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
+ this, SLOT(FusionChanged(int,double)));
connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
- this,SLOT(WindowLevelChanged()));
+ this,SLOT(WindowLevelChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
- this,SLOT(UpdateSlice(int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(UpdateTSlice(int, int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(ImageInfoChanged()));
+ this,SLOT(UpdateSlice(int,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int, int)),
+ this,SLOT(UpdateTSlice(int, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int, int)),
+ this,SLOT(ImageInfoChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
- this,SLOT(UpdateSliceRange(int,int,int,int,int)));
+ this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
- this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
- this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
- this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
+ this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
- InitSlicers();
+ InitSlicers();
numberofsuccesulreads++;
}
}
colorMapComboBox->setEnabled(1);
for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
- DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion" ||
- DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusionSequence") {
- colorMapComboBox->setEnabled(0);
- break;
+ DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion" ||
+ DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusionSequence") {
+ colorMapComboBox->setEnabled(0);
+ break;
}
}
- std::vector<double> origin;
+ std::vector<double> origin;
std::vector<double> inputSpacing;
std::vector<int> inputSize;
std::vector<double> sizeMM;
QString inputSizeInBytes;
QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- int nframes = mSlicerManagers[index]->GetSlicer(0)->GetTMax();
+ int nframes = mSlicerManagers[index]->GetSlicer(0)->GetTMax();
- if (nframes > 1 || playMode == 1) {
+ if (nframes > 1 || playMode == 1) {
playButton->setEnabled(1);
frameRateLabel->setEnabled(1);
frameRateSpinBox->setEnabled(1);
//read image header
int NPixel = 1;
- int tSlice = 0;
+ int tSlice = 0;
vvImage::Pointer imageSelected;
if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
- tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
}
else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusionSequence") {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
- tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
- }
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
+ }
else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "contour") {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
- tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
}
else {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
- tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
}
- dimension = imageSelected->GetNumberOfDimensions();
+ dimension = imageSelected->GetNumberOfDimensions();
origin.resize(dimension);
inputSpacing.resize(dimension);
inputSize.resize(dimension);
infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
- transformation = imageSelected->GetTransform()[tSlice]->GetMatrix();
+ transformation = imageSelected->GetTransform()[tSlice]->GetMatrix();
infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
- landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
- mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
+ landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
}
}
- infoPanel->setFileName(image);
+ infoPanel->setFileName(image);
infoPanel->setDimension(dim);
infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
- mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
break;
}
}
- WindowLevelChanged();
+ WindowLevelChanged();
- slicingPresetComboBox->setCurrentIndex(mSlicerManagers[index]->GetSlicingPreset());
+ slicingPresetComboBox->setCurrentIndex(mSlicerManagers[index]->GetSlicingPreset());
- if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
+ if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
- mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
- mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
+ mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
+ mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
} else {
overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
overlayPanel->getVFProperty(-1,-1,-1);
} else {
overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
}
-
- if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
+
+ if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
} else {
overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
sizes[3].cols[0] = 1;
sizes[3].cols[1] = 2;
sizes[3].cols[2] = 3;
-
+
int slicer = mSlicerManagers[mCurrentPickedImageIndex]->GetSelectedSlicer();
if (viewMode == 1) {
if (slicer >= 0) {
** the associated Slicer to redraw crosses.
*/
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
-// if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
- mSlicerManagers[i]->GetSlicer(0)->Render();
- mSlicerManagers[i]->GetSlicer(1)->Render();
-// if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
- mSlicerManagers[i]->GetSlicer(2)->Render();
- mSlicerManagers[i]->GetSlicer(3)->Render();
+ // if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
+ mSlicerManagers[i]->GetSlicer(0)->Render();
+ mSlicerManagers[i]->GetSlicer(1)->Render();
+ // if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
+ mSlicerManagers[i]->GetSlicer(2)->Render();
+ mSlicerManagers[i]->GetSlicer(3)->Render();
}
}
//------------------------------------------------------------------------------
for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
- //select the image only if previous are not selected
+ //select the image only if previous are not selected
if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
mSlicerManagers[i]->UpdateSlicer(j,1);
- AlreadySelected = true;
+ AlreadySelected = true;
} else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
if (DataTree->selectedItems().size() == 0)
- DataTree->topLevelItem(i)->setSelected(1); //RB: crash here when loading an image...
+ DataTree->topLevelItem(i)->setSelected(1);
DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
mSlicerManagers[i]->UpdateSlicer(j,1);
DisplaySliders(i,j);
QString warning = "Do you really want to close the overlay : ";
warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
- warning, 0, this);
+ warning, 0, this);
msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
if (msgBox.exec() == QMessageBox::AcceptRole) {
int overlay_index=0;
for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
if (DataTree->topLevelItem(index)->\
- child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
+ child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
overlay_index++;
if (DataTree->topLevelItem(index)->child(child) == item) break;
}
- if (overlay_type=="fusionSequence") {
- //removing the overlay sequence in a fusion sequence visualization mode
- //TODO: remove the synchronization (transform matrices, etc...)
+ if (overlay_type=="fusionSequence") {
+ //removing the overlay sequence in a fusion sequence visualization mode
+ //TODO: remove the synchronization (transform matrices, etc...)
- //=> unlink and untie the slicer managers
- mSlicerManagers[index]->SetFusionSequenceInvolvmentCode(-1);
- mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->SetFusionSequenceInvolvmentCode(-1);
- RemoveLink(mSlicerManagers[index]->GetId().c_str(), mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->GetId().c_str());
+ //=> unlink and untie the slicer managers
+ RemoveLink(mSlicerManagers[index]->GetId().c_str(), mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->GetId().c_str());
+ mSlicerManagers[index]->SetFusionSequenceInvolvmentCode(-1);
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->SetFusionSequenceInvolvmentCode(-1);
- }
+ }
mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
mSlicerManagers[index]->SetColorMap(0);
DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
warning += "\nThis is the last image, you're about to close vv !!!";
QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
- warning, 0, this);
+ warning, 0, this);
msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
if (msgBox.exec() == QMessageBox::AcceptRole) {
QString warning = "Do you really want to close the image : ";
warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
- warning, 0, this);
+ warning, 0, this);
msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
if (msgBox.exec() == QMessageBox::AcceptRole) {
linkPanel->removeImage(index);
mSlicerManagers[index]->RemoveActors();
- //if the slicer manager was involved in a fusion sequence visualization...
- if ( item->data(1,Qt::UserRole).toString().toStdString() == "fusionSequence" ) {
- //TODO
- //make sure both SlicerManager exit the FusionSequence visualization mode
- //disable the temporal and spatial sync? make sure we reset the spatial transforms to their initial states...
- mSlicerManagers[index]->SetFusionSequenceInvolvmentCode(-1);
- mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->SetFusionSequenceInvolvmentCode(-1);
- }
+ //if the slicer manager was involved in a fusion sequence visualization...
+ if ( item->data(1,Qt::UserRole).toString().toStdString() == "fusionSequence" ) {
+ //TODO
+ //make sure both SlicerManager exit the FusionSequence visualization mode
+ //disable the temporal and spatial sync? make sure we reset the spatial transforms to their initial states...
+ mSlicerManagers[index]->SetFusionSequenceInvolvmentCode(-1);
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->SetFusionSequenceInvolvmentCode(-1);
+ }
- //remove the slicer manager
+ //remove the slicer manager
delete mSlicerManagers[index];
mSlicerManagers.erase(Manageriter);
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
+//called when AddOverlayImage, AddFusionSequence
+//or when UpdateWindowLevel() is called ; when slicerManager emits WindowLevelChanged
+//when ImageInfoChanged() is called
void vvMainWindow::WindowLevelChanged()
{
// Base image
// Overlay image
if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor(),
- mSlicerManagers[index]->GetLinkOverlayWindowLevel(),
- mSlicerManagers[index]->GetOverlayColorWindow(),
- mSlicerManagers[index]->GetOverlayColorLevel());
+ mSlicerManagers[index]->GetLinkOverlayWindowLevel(),
+ mSlicerManagers[index]->GetOverlayColorWindow(),
+ mSlicerManagers[index]->GetOverlayColorLevel());
else
overlayPanel->getOverlayProperty(-1,0,0.,0.);
// Fusion & SequenceFusion image
if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
- overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
- mSlicerManagers[index]->GetFusionThresholdOpacity(),
- mSlicerManagers[index]->GetFusionColorMap(),
- mSlicerManagers[index]->GetFusionWindow(),
- mSlicerManagers[index]->GetFusionLevel());
- if (mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
- overlayPanel->getFusionSequenceProperty(mSlicerManagers[index]->GetFusionSequenceFrameIndex(),
- mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag(),
- mSlicerManagers[index]->GetFusionSequenceNbFrames(),
- mSlicerManagers[index]->GetFusionSequenceTemporalSyncFlag());
- }
+ overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
+ mSlicerManagers[index]->GetFusionThresholdOpacity(),
+ mSlicerManagers[index]->GetFusionColorMap(),
+ mSlicerManagers[index]->GetFusionWindow(),
+ mSlicerManagers[index]->GetFusionLevel());
+ if (mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
+ overlayPanel->getFusionSequenceProperty(mSlicerManagers[index]->GetFusionSequenceFrameIndex(),
+ mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag(),
+ mSlicerManagers[index]->GetFusionSequenceNbFrames(),
+ mSlicerManagers[index]->GetFusionSequenceTemporalSyncFlag());
+ }
}
else if ( mSlicerManagers[index]->IsSecondarySequenceOfFusionSequence() ) {
- //if the image is involved in a fusion sequence, preserve the overlay panel!
- int ind = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
- overlayPanel->getFusionProperty(mSlicerManagers[ind]->GetFusionOpacity(),
- mSlicerManagers[ind]->GetFusionThresholdOpacity(),
- mSlicerManagers[ind]->GetFusionColorMap(),
- mSlicerManagers[ind]->GetFusionWindow(),
- mSlicerManagers[ind]->GetFusionLevel());
- overlayPanel->getFusionSequenceProperty(mSlicerManagers[ind]->GetFusionSequenceFrameIndex(),
- mSlicerManagers[ind]->GetFusionSequenceSpatialSyncFlag(),
- mSlicerManagers[ind]->GetFusionSequenceNbFrames(),
- mSlicerManagers[ind]->GetFusionSequenceTemporalSyncFlag());
+ //if the image is involved in a fusion sequence, preserve the overlay panel!
+ int ind = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ overlayPanel->getFusionProperty(mSlicerManagers[ind]->GetFusionOpacity(),
+ mSlicerManagers[ind]->GetFusionThresholdOpacity(),
+ mSlicerManagers[ind]->GetFusionColorMap(),
+ mSlicerManagers[ind]->GetFusionWindow(),
+ mSlicerManagers[ind]->GetFusionLevel());
+ overlayPanel->getFusionSequenceProperty(mSlicerManagers[ind]->GetFusionSequenceFrameIndex(),
+ mSlicerManagers[ind]->GetFusionSequenceSpatialSyncFlag(),
+ mSlicerManagers[ind]->GetFusionSequenceNbFrames(),
+ mSlicerManagers[ind]->GetFusionSequenceTemporalSyncFlag());
}
else
{
- overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
- overlayPanel->getFusionSequenceProperty(-1, false, 0, false);
+ overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
+ overlayPanel->getFusionSequenceProperty(-1, false, 0, false);
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
{
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (mSlicerManagers[i]->GetId() == id) {
- mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
- mSlicerManagers[i]->UpdateViews(0,slicer);
- break;
- }
- }
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (mSlicerManagers[i]->GetId() == id) {
+ mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
+ mSlicerManagers[i]->UpdateViews(0,slicer);
+ break;
+ }
+ }
}
//------------------------------------------------------------------------------
contextActions[1]->setEnabled(1);
contextActions[2]->setEnabled(
DataTree->itemWidget(DataTree->selectedItems()[0],
- COLUMN_RELOAD_IMAGE)->isEnabled());
+ COLUMN_RELOAD_IMAGE)->isEnabled());
contextActions[3]->setEnabled(1);
contextActions[5]->setEnabled(1);
contextActions[6]->setEnabled(1);
return;
}
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image"),mInputPathName,Extensions);
- if (files.isEmpty())
- return;
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
- std::vector<std::string> vecFileNames;
- for (int i = 0; i < files.size(); i++) {
- vecFileNames.push_back(files[i].toStdString());
- }
- AddOverlayImage(index,vecFileNames,vvImageReader::IMAGE);
+ std::vector<std::string> vecFileNames;
+ for (int i = 0; i < files.size(); i++) {
+ vecFileNames.push_back(files[i].toStdString());
+ }
+ AddOverlayImage(index,vecFileNames,vvImageReader::IMAGE);
}
//------------------------------------------------------------------------------
{
mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
reader->SetFileName(fileNames[0].c_str());
reader->ReadImageInformation();
std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
cButton->setToolTip(tr("close image"));
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
rButton->setToolTip(tr("reload image"));
rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
DataTree->topLevelItem(index)->setExpanded(1);
DataTree->topLevelItem(index)->addChild(item);
mReader->SetInputFilename(filename.toStdString());
mReader->Update(IMAGE);
if (mReader->GetLastError().size() != 0) {
- std::cerr << "Error while reading " << filename.toStdString() << std::endl;
- QString error = "Cannot open file \n";
- error += mReader->GetLastError().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- delete mReader;
- return;
+ std::cerr << "Error while reading " << filename.toStdString() << std::endl;
+ QString error = "Cannot open file \n";
+ error += mReader->GetLastError().c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ delete mReader;
+ return;
}
vvImage::Pointer roi = mReader->GetOutput();
//check if one fusion image is added
for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
- (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
- QString error = "Cannot add more than one fusion image\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding fusion image !"),error);
- return;
+ (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
+ QString error = "Cannot add more than one fusion image\n";
+ error += "Please remove first ";
+ error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
+ QMessageBox::information(this,tr("Problem adding fusion image !"),error);
+ return;
}
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
- if (!file.isEmpty())
- AddFusionImage(index,file);
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
+ if (!file.isEmpty())
+ AddFusionImage(index,file);
}
//------------------------------------------------------------------------------
{
mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
reader->SetFileName(file.toStdString().c_str());
reader->ReadImageInformation();
std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
if (mSlicerManagers[index]->SetFusion(file.toStdString(),
- reader->GetNumberOfDimensions(), component)) {
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,file.toStdString().c_str());
- item->setData(1,Qt::UserRole,tr("fusion"));
- QFileInfo fileinfo(filename.c_str()); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
- qApp->processEvents();
-
- for (int j = 1; j <= 4; j++) {
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- }
+ reader->GetNumberOfDimensions(), component)) {
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,file.toStdString().c_str());
+ item->setData(1,Qt::UserRole,tr("fusion"));
+ QFileInfo fileinfo(filename.c_str()); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
+ qApp->processEvents();
+
+ for (int j = 1; j <= 4; j++) {
+ item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
+ }
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
this,SLOT(CloseImage(QTreeWidgetItem*, int)));
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
- DataTree->topLevelItem(index)->setExpanded(1);
- DataTree->topLevelItem(index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
-
- //set the id of the image
- QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- UpdateTree();
- qApp->processEvents();
- ImageInfoChanged();
- QApplication::restoreOverrideCursor();
+ DataTree->topLevelItem(index)->setExpanded(1);
+ DataTree->topLevelItem(index)->addChild(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+
+ //set the id of the image
+ QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ UpdateTree();
+ qApp->processEvents();
+ ImageInfoChanged();
+ QApplication::restoreOverrideCursor();
} else {
QApplication::restoreOverrideCursor();
QString error = "Cannot import the new image.\n";
return;
}
- QString Extensions = "Images ( *.mhd)";
- Extensions += ";;Images ( *.mha)";
- Extensions += ";;VF Images ( *.vf)";
- Extensions += ";;nii Images ( *.nii)";
- Extensions += ";;nrrd Images ( *.nrrd)";
- Extensions += ";;nhdr Images ( *.nhdr)";
- Extensions += ";;All Files (*)";
- QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
- if (!file.isEmpty())
- AddField(file,index);
+ QString Extensions = "Images ( *.mhd)";
+ Extensions += ";;Images ( *.mha)";
+ Extensions += ";;VF Images ( *.vf)";
+ Extensions += ";;nii Images ( *.nii)";
+ Extensions += ";;nrrd Images ( *.nrrd)";
+ Extensions += ";;nhdr Images ( *.nhdr)";
+ Extensions += ";;All Files (*)";
+ QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
+ if (!file.isEmpty())
+ AddField(file,index);
}
//------------------------------------------------------------------------------
cButton->setToolTip(tr("close vector field"));
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
rButton->setEnabled(from_disk);
rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
DataTree->topLevelItem(index)->setExpanded(1);
DataTree->topLevelItem(index)->addChild(item);
mSlicerManagers[index]->SetFusionLevel(level);
mSlicerManagers[index]->SetFusionShowLegend(showLegend);
mSlicerManagers[index]->SetColorMap(0);
- mSlicerManagers[index]->Render();
+ mSlicerManagers[index]->Render();
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SelectFusionSequence()
{
- //get the index of the slicer manager of the main sequence (CT)
+ //get the index of the slicer manager of the main sequence (CT)
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
//check if one overlay image is already associated
for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
- (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
- QString error = "Cannot add more than one compared image\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding compared image !"),error);
- return;
+ (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
+ QString error = "Cannot add more than one compared image\n";
+ error += "Please remove first ";
+ error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
+ QMessageBox::information(this,tr("Problem adding compared image !"),error);
+ return;
}
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image sequence"),mInputPathName,Extensions);
- if (files.isEmpty())
- return;
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image sequence"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
- std::vector<std::string> vecFileNames;
- for (int i = 0; i < files.size(); i++) {
- vecFileNames.push_back(files[i].toStdString());
- }
-
- //associate the secondary sequence (US) to the main one
- AddFusionSequence(index,vecFileNames,vvImageReader::MERGEDWITHTIME);
+ std::vector<std::string> vecFileNames;
+ for (int i = 0; i < files.size(); i++) {
+ vecFileNames.push_back(files[i].toStdString());
+ }
+
+ //associate the secondary sequence (US) to the main one
+ AddFusionSequence(index,vecFileNames,vvImageReader::MERGEDWITHTIME);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SelectFusionSequenceTemporalSignal() {
- //make sure the index is right?
- //in the end, I should attach the temporal data to the right sequence!
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- //in case the other sequence got selected, make sure we select the primary sequence
- if ( (!mSlicerManagers[index]->GetSlicer(0)->GetFusion()) && mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()>=0 ) {
- index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
- }
-
- //open a dialog box to find a file
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QString fileName = QFileDialog::getOpenFileName(this,tr("Load respiratory signal for fused sequence"),mInputPathName,Extensions);
- if (fileName.isNull())
- return;
-
- //read it as a vector of values
- std::vector<double> signal;
- //...TODO, look for itk functions that can do that... vnl in the worst case.
- signal.push_back(1);signal.push_back(2);
+ //make sure the index is right?
+ //in the end, I should attach the temporal data to the right sequence!
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ //in case the other sequence got selected, make sure we select the primary sequence
+ if ( (!mSlicerManagers[index]->GetSlicer(0)->GetFusion()) && mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()>=0 ) {
+ index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ }
- //TODO: instead: if the loaded signal is longer, just crop it...
- //this allows loading only the first few frames when testing.
- //->maybe raise a message that this behavior may be unsafe...
+ //open a dialog box to find a file
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QString fileName = QFileDialog::getOpenFileName(this,tr("Load respiratory signal for fused sequence"),mInputPathName,Extensions);
+ if (fileName.isNull())
+ return;
- //if compatible with the fused image sequence (number of images = number of entries), enable the temporalSync
- if ( signal.size() >= mSlicerManagers[index]->GetFusionSequenceNbFrames()) {
- //for convenience, associate this sequence to both the current slicer manager, and to the linked one
- mSlicerManagers[index]->SetFusionSequenceTemporalSignal(signal);
- mSlicerManagers[ mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager() ]->SetFusionSequenceTemporalSignal(signal);
- overlayPanel->enableFusionSequenceTemporalSync();
- QMessageBox::information(this,tr("Adding signal"),"would add the signal from file: "+ fileName);
- }
- else {//else, send a message to signal the failure...
- QString error = "The provided signal doesn't have the same duration as the sequence\n";
- error += "Ignoring file: " + fileName;
- QMessageBox::information(this,tr("Problem adding signal!"),error);
- return;
- }
+ //read it as a vector of values
+ std::vector<double> signal;
+ //...TODO, look for itk functions that can do that... vnl in the worst case.
+ signal.push_back(1);signal.push_back(2);
+
+ //TODO: instead: if the loaded signal is longer, just crop it...
+ //this allows loading only the first few frames when testing.
+ //->maybe raise a message that this behavior may be unsafe...
+
+ //if compatible with the fused image sequence (number of images = number of entries), enable the temporalSync
+ if ( signal.size() >= mSlicerManagers[index]->GetFusionSequenceNbFrames()) {
+ //for convenience, associate this sequence to both the current slicer manager, and to the linked one
+ mSlicerManagers[index]->SetFusionSequenceTemporalSignal(signal);
+ mSlicerManagers[ mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager() ]->SetFusionSequenceTemporalSignal(signal);
+ overlayPanel->enableFusionSequenceTemporalSync();
+ QMessageBox::information(this,tr("Adding signal"),"would add the signal from file: "+ fileName);
+ }
+ else {//else, send a message to signal the failure...
+ QString error = "The provided signal doesn't have the same duration as the sequence\n";
+ error += "Ignoring file: " + fileName;
+ QMessageBox::information(this,tr("Problem adding signal!"),error);
+ return;
+ }
}
//------------------------------------------------------------------------------
//the files behind fileNames points to the data for the secondary sequence
void vvMainWindow::AddFusionSequence(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
{
- QString file(fileNames[0].c_str());
- if (QFile::exists(file))
- {
- mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(fileNames[0].c_str());
- reader->ReadImageInformation();
- std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
- int dimension = reader->GetNumberOfDimensions();
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvProgressDialog progress("Opening " + file.toStdString());
- qApp->processEvents();
-
- std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
-
- if (mSlicerManagers[index]->SetFusionSequence(fileNames,dimension, component,type)) {
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,file.toStdString().c_str());
- item->setData(1,Qt::UserRole,tr("fusionSequence"));
-
- QFileInfo fileinfo(file); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusionSequence").c_str());
- qApp->processEvents();
- for (int j = 1; j <= 4; j++) {
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- }
-
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
-
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
-
- DataTree->topLevelItem(index)->setExpanded(1);
- DataTree->topLevelItem(index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
-
- //store the original transform matrix
- int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
- mSlicerManagers[indexParent]->SetFusionSequenceMainTransformMatrix( mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[0]->GetMatrix() );
-
- //set the id of the image
- QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- UpdateTree();
- qApp->processEvents();
-
- ImageInfoChanged();
-
- QApplication::restoreOverrideCursor();
- // Update the display to update, e.g., the sliders
- for(int i=0; i<4; i++)
- DisplaySliders(index, i);
-
-
- //This loads the secondary sequence (US) as an independent sequence
- LoadImages(fileNames, type);
- //reset the transforms to identiy
- for (unsigned i=0 ; i<mSlicerManagers.back()->GetImage()->GetTransform().size() ; i++) {
- mSlicerManagers.back()->GetImage()->GetTransform()[i]->Identity();
- mSlicerManagers.back()->GetImage()->GetTransform()[i]->Update();
- }
-
- //automatically link both images...
- AddLink(mSlicerManagers[indexParent]->GetId().c_str(), mSlicerManagers.back()->GetId().c_str(), false);
-
- //tie the main and secondary sequences by raising flags and informing each another of their respective SlicerManager indices
- mSlicerManagers[indexParent]->SetFusionSequenceIndexOfLinkedManager(mSlicerManagers.size()-1);
- mSlicerManagers[indexParent]->SetFusionSequenceInvolvmentCode(0); //main sequence
- mSlicerManagers.back()->SetFusionSequenceIndexOfLinkedManager(indexParent);
- mSlicerManagers.back()->SetFusionSequenceInvolvmentCode(1); //secondary sequence
-
- } else {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot import the new image.\n";
- error += mSlicerManagers[index]->GetLastError().c_str();
- QMessageBox::information(this,tr("Problem reading image !"),error);
- }
- WindowLevelChanged();
- }
- else {
- QMessageBox::information(this,tr("Problem reading fusion sequence !"),"File doesn't exist!");
- return;
- }
+ QString file(fileNames[0].c_str());
+ if (QFile::exists(file))
+ {
+ mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
+ itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ reader->SetFileName(fileNames[0].c_str());
+ reader->ReadImageInformation();
+ std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
+ int dimension = reader->GetNumberOfDimensions();
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ vvProgressDialog progress("Opening " + file.toStdString());
+ qApp->processEvents();
+
+ std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
+
+ if (mSlicerManagers[index]->SetFusionSequence(fileNames,dimension, component,type)) {
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,file.toStdString().c_str());
+ item->setData(1,Qt::UserRole,tr("fusionSequence"));
+
+ QFileInfo fileinfo(file); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusionSequence").c_str());
+ qApp->processEvents();
+ for (int j = 1; j <= 4; j++) {
+ item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
+ }
+
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+
+ DataTree->topLevelItem(index)->setExpanded(1);
+ DataTree->topLevelItem(index)->addChild(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+
+ //store the original transform matrix
+ int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
+ mSlicerManagers[indexParent]->SetFusionSequenceMainTransformMatrix( mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[0]->GetMatrix() );
+
+ //set the id of the image
+ QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ UpdateTree();
+ qApp->processEvents();
+
+ //ImageInfoChanged();
+
+ QApplication::restoreOverrideCursor();
+ // Update the display to update, e.g., the sliders
+ for(int i=0; i<4; i++)
+ DisplaySliders(index, i);
+
+
+ //This loads the secondary sequence (US) as an independent sequence
+ LoadImages(fileNames, type);
+ //reset the transforms to identiy
+ for (unsigned i=0 ; i<mSlicerManagers.back()->GetImage()->GetTransform().size() ; i++) {
+ mSlicerManagers.back()->GetImage()->GetTransform()[i]->Identity();
+ mSlicerManagers.back()->GetImage()->GetTransform()[i]->Update();
+ }
+
+ //automatically link both images...
+ AddLink(mSlicerManagers[indexParent]->GetId().c_str(), mSlicerManagers.back()->GetId().c_str(), false);
+
+ //tie the main and secondary sequences by raising flags and informing each another of their respective SlicerManager indices
+ mSlicerManagers[indexParent]->SetFusionSequenceIndexOfLinkedManager(mSlicerManagers.size()-1);
+ mSlicerManagers[indexParent]->SetFusionSequenceInvolvmentCode(0); //main sequence
+ mSlicerManagers.back()->SetFusionSequenceIndexOfLinkedManager(indexParent);
+ mSlicerManagers.back()->SetFusionSequenceInvolvmentCode(1); //secondary sequence
+ for (unsigned i=0 ; i<4 ; i++) {
+ mSlicerManagers.back()->GetSlicer(i)->SetFusionSequenceCode(1); //flag the slicers of the secondary sequence
+ }
+
+ } else {
+ QApplication::restoreOverrideCursor();
+ QString error = "Cannot import the new image.\n";
+ error += mSlicerManagers[index]->GetLastError().c_str();
+ QMessageBox::information(this,tr("Problem reading image !"),error);
+ }
+ //WindowLevelChanged();
+ ImageInfoChanged(); //this internally calls WindowLevelChanged...
+ }
+ else {
+ QMessageBox::information(this,tr("Problem reading fusion sequence !"),"File doesn't exist!");
+ return;
+ }
}
//------------------------------------------------------------------------------
//fusionSequenceFrameIndex and fusionSequenceNbFrames are relative to the secondary sequence (US)
void vvMainWindow::SetFusionSequenceProperty(int fusionSequenceFrameIndex, bool spatialSyncFlag, unsigned int fusionSequenceNbFrames, bool temporalSyncFlag)
{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- //check if the focus moved to the linked sequence, and in this case, select the master sequence instead
- if (!mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
- index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
- }
+ if (!mSlicerManagers[index]->IsInvolvedInFusionSequence()) return;
+ //check if the focus moved to the linked sequence, and in this case, select the master sequence instead
+ if (!mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
+ index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ }
int secondaryIndex = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ if (secondaryIndex==-1) return; //this should never happen
if ( (!mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) ||
(!mSlicerManagers[secondaryIndex]->IsSecondarySequenceOfFusionSequence()) )
{return;} //this should never happen, raise an exception?
if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
- int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
-//check whether this really makes sense to look at 'parentIndex'...
-std::cout<<"index = "<<index<<", indexParent = "<< indexParent<<std::endl;
- //if the spatialSync button is unchecked, then reposition the parent sequence (CT) in its original coordinate frame
+ //First, if the spatialSync button is unchecked, then reposition the parent sequence (CT) in its original coordinate frame
if ( (!spatialSyncFlag) && (mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag()) ) {
- for ( unsigned i=0 ; i<mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
- mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
- mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
+ for ( unsigned i=0 ; i<mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
}
- for (int i=0; i<mSlicerManagers[indexParent]->GetNumberOfSlicers(); i++) {
- mSlicerManagers[indexParent]->GetSlicer(i)->ForceUpdateDisplayExtent();
- mSlicerManagers[indexParent]->GetSlicer(i)->Render();
+ for (int i=0; i<mSlicerManagers[index]->GetNumberOfSlicers(); i++) {
+ mSlicerManagers[index]->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mSlicerManagers[index]->GetSlicer(i)->Render();
}
}
-
- //update the property values in the slicer manager
+ //then, update the property values in the slicer manager
mSlicerManagers[index]->SetFusionSequenceLength(fusionSequenceNbFrames);
mSlicerManagers[index]->SetFusionSequenceSpatialSyncFlag(spatialSyncFlag);
- mSlicerManagers[index]->SetFusionSequenceSpatialSyncFlag(temporalSyncFlag);
+ mSlicerManagers[index]->SetFusionSequenceTemporalSyncFlag(temporalSyncFlag);
mSlicerManagers[index]->SetFusionSequenceFrameIndex(fusionSequenceFrameIndex);
- //show the right frame of the US sequence
- mSlicerManagers[index]->SetFusionSequenceTSlice(fusionSequenceFrameIndex);
- //update the TSlice of the linked sequence if possible
- mSlicerManagers[secondaryIndex]->SetTSlice(fusionSequenceFrameIndex, true);
+ //select the right frame of the US sequence
+ mSlicerManagers[index]->SetFusionSequenceTSlice(fusionSequenceFrameIndex); //here, I should only update the overlayed sequence
+ mSlicerManagers[secondaryIndex]->SetTSlice(fusionSequenceFrameIndex, false); //this should update the secondary sequence (individual version)
//update the horizontal sliders of the main window
overlayPanel->updateFusionSequenceSliderValueFromWindow(fusionSequenceFrameIndex, false);
}
- //Set the transform matrix of the parent sequence (typically CT / 4DCT)
- vtkSmartPointer<vtkMatrix4x4> tmpMat = vtkSmartPointer<vtkMatrix4x4>::New();
- vtkMatrix4x4::Invert( mSlicerManagers[index]->GetFusionSequenceInitialTransformMatrixAtFrame(fusionSequenceFrameIndex), tmpMat );
- for ( unsigned i=0 ; i<mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
- mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
- mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->PreMultiply();
- mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Concatenate( tmpMat );
- mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
- }
+ //Set the transform matrix of the parent sequence (typically CT / 4DCT)
+ vtkSmartPointer<vtkMatrix4x4> tmpMat = vtkSmartPointer<vtkMatrix4x4>::New();
+ vtkMatrix4x4::Invert( mSlicerManagers[index]->GetFusionSequenceInitialTransformMatrixAtFrame(fusionSequenceFrameIndex), tmpMat );
+ for ( unsigned i=0 ; i<mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->PreMultiply();
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->Concatenate( tmpMat );
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
+ }
- for (int i=0; i<mSlicerManagers[indexParent]->GetNumberOfSlicers(); i++) {
- mSlicerManagers[indexParent]->GetSlicer(i)->ForceUpdateDisplayExtent();
- mSlicerManagers[indexParent]->GetSlicer(i)->Render();
- }
+ for (int i=0; i<mSlicerManagers[index]->GetNumberOfSlicers(); i++) {
+ mSlicerManagers[index]->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mSlicerManagers[index]->GetSlicer(i)->Render();
+ }
- }
+ }
- }
+ }
}
//------------------------------------------------------------------------------
Extensions += ")";
}
QString fileName = QFileDialog::getSaveFileName(this,
- tr("Save As"),
- mSlicerManagers[index]->GetFileName().c_str(),
- Extensions);
+ tr("Save As"),
+ mSlicerManagers[index]->GetFileName().c_str(),
+ Extensions);
if (!fileName.isEmpty()) {
std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
if (OutputListeFormat.contains(
- fileformat.c_str())) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- std::string action = "Saving";
- vvProgressDialog progress("Saving "+fileName.toStdString());
- qApp->processEvents();
- vvImageWriter::Pointer writer = vvImageWriter::New();
- writer->SetOutputFileName(fileName.toStdString());
- writer->SetInput(mSlicerManagers[index]->GetImage());
-
- // Check on transform and prompt user
- writer->SetSaveTransform(false);
- bool bId = true;
- for(int i=0; i<4; i++)
- for(int j=0; j<4; j++) {
- // TODO SR and BP: check on the list of transforms and not the first only
- double elt = mSlicerManagers[index]->GetImage()->GetTransform()[0]->GetMatrix()->GetElement(i,j);
- if(i==j && elt!=1.)
- bId = false;
- if(i!=j && elt!=0.)
- bId = false;
- }
- if( !bId ) {
- QString warning = "The image has an associated linear transform. Do you want to save it along?";
- QMessageBox msgBox(QMessageBox::Warning, tr("Save transform"), warning, 0, this);
- msgBox.addButton(tr("Yes"), QMessageBox::AcceptRole);
- msgBox.addButton(tr("No"), QMessageBox::RejectRole);
- if (msgBox.exec() == QMessageBox::AcceptRole)
- writer->SetSaveTransform(true);
- }
+ fileformat.c_str())) {
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ std::string action = "Saving";
+ vvProgressDialog progress("Saving "+fileName.toStdString());
+ qApp->processEvents();
+ vvImageWriter::Pointer writer = vvImageWriter::New();
+ writer->SetOutputFileName(fileName.toStdString());
+ writer->SetInput(mSlicerManagers[index]->GetImage());
+
+ // Check on transform and prompt user
+ writer->SetSaveTransform(false);
+ bool bId = true;
+ for(int i=0; i<4; i++)
+ for(int j=0; j<4; j++) {
+ // TODO SR and BP: check on the list of transforms and not the first only
+ double elt = mSlicerManagers[index]->GetImage()->GetTransform()[0]->GetMatrix()->GetElement(i,j);
+ if(i==j && elt!=1.)
+ bId = false;
+ if(i!=j && elt!=0.)
+ bId = false;
+ }
+ if( !bId ) {
+ QString warning = "The image has an associated linear transform. Do you want to save it along?";
+ QMessageBox msgBox(QMessageBox::Warning, tr("Save transform"), warning, 0, this);
+ msgBox.addButton(tr("Yes"), QMessageBox::AcceptRole);
+ msgBox.addButton(tr("No"), QMessageBox::RejectRole);
+ if (msgBox.exec() == QMessageBox::AcceptRole)
+ writer->SetSaveTransform(true);
+ }
- writer->Update();
- QApplication::restoreOverrideCursor();
- if (writer->GetLastError().size()) {
- QString error = "Saving did not succeed\n";
- error += writer->GetLastError().c_str();
- QMessageBox::information(this,tr("Saving Problem"),error);
- SaveAs();
- }
+ writer->Update();
+ QApplication::restoreOverrideCursor();
+ if (writer->GetLastError().size()) {
+ QString error = "Saving did not succeed\n";
+ error += writer->GetLastError().c_str();
+ QMessageBox::information(this,tr("Saving Problem"),error);
+ SaveAs();
+ }
} else {
QString error = fileformat.c_str();
if (error.isEmpty())
{
QString Extensions = "XML Files(*.xml)";
QString fileName = QFileDialog::getSaveFileName(this,
- tr("Save Current Window State"),
- "",
- Extensions);
-
+ tr("Save Current Window State"),
+ "",
+ Extensions);
+
SaveCurrentStateAs(fileName.toStdString());
}
//------------------------------------------------------------------------------
{
QString Extensions = "XML Files(*.xml)";
QString fileName = QFileDialog::getOpenFileName(this,
- tr("Load Window State"),
- "",
- Extensions);
-
+ tr("Load Window State"),
+ "",
+ Extensions);
+
ReadSavedStateFile(fileName.toStdString());
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::LinkAllImages()
{
- linkPanel->linkAll();
+ linkPanel->linkAll();
}
//------------------------------------------------------------------------------
linkPanel->addLinkFromIds(image1, image2);
return;
}
-
+
unsigned int sm1 = 0;
unsigned int sm2 = 0;
//------------------------------------------------------------------------------
void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
{
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
-
- if (mSlicerManagers[i]->IsInvolvedInFusionSequence()) {
- //if the slicerManager is involved in a fusionSequence as the secondary sequence, then update the slider position in the overlay panel and everything accordingly
- if (mSlicerManagers[i]->IsSecondarySequenceOfFusionSequence()) { overlayPanel->updateFusionSequenceSliderValueFromWindow(value, true); }
- else { //if this is the primary sequence that has been modified
- if (mSlicerManagers[i]->GetFusionSequenceTemporalSyncFlag()) {
- //TODO: if temporal sync is active
- //estimate a corresponding time index for the secondary (US) sequence, and update it accordingly.
- int estimatedValue=0;
- overlayPanel->updateFusionSequenceSliderValueFromWindow(estimatedValue, true);
- }
- }
- }
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
+ //i is the SlicerManager that is in charge of this slicer.
+ if (mSlicerManagers[i]->IsInvolvedInFusionSequence()) {
+ //if the slicerManager is involved in a fusionSequence as the secondary sequence, then update the slider position in the overlay panel and everything accordingly
+ if (mSlicerManagers[i]->IsSecondarySequenceOfFusionSequence()) {
+ overlayPanel->updateFusionSequenceSliderValueFromWindow(value, true);
+ }
+ else { //if this is the primary sequence that has been modified
+ if (mSlicerManagers[i]->GetFusionSequenceTemporalSyncFlag()) {
+ //WARNING: for some obscure reason, there are problems when accessing mSlicerManagers[mSlicerManagers[i]->GetFusionSequenceIndexOfLinkedManager()]->GetFusionSequenceFrameIndex();
+
+ //int estimatedValue=mSlicerManagers[mSlicerManagers[i]->GetFusionSequenceIndexOfLinkedManager()]->GetFusionSequenceFrameIndex();
+ int estimatedValue=0;
+ //TODO: if temporal sync is active
+ //estimate a corresponding time index for the secondary (US) sequence, and update it accordingly.
+ //estimatedValue = ...
+ overlayPanel->updateFusionSequenceSliderValueFromWindow(estimatedValue, true);
+ }
+ }
+ }
- for (int j = 0; j < 4; j++) {
- mSlicerManagers[i]->SetTSliceInSlicer(value,j);
- }
- mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
- break;
- }
- }
+ for (int j = 0; j < 4; j++) {
+ mSlicerManagers[i]->SetTSliceInSlicer(value,j);
+ }
+ mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
+ break;
+ }
+ }
}
//------------------------------------------------------------------------------
{
// if (mCurrentTime == NOHorizontalSlider->value()) return;
HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
-// mCurrentTime = NOHorizontalSlider->value();
+ // mCurrentTime = NOHorizontalSlider->value();
}
//------------------------------------------------------------------------------
{
// if (mCurrentTime == NEHorizontalSlider->value()) return;
HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
-// mCurrentTime = NEHorizontalSlider->value();
+ // mCurrentTime = NEHorizontalSlider->value();
}
//------------------------------------------------------------------------------
void vvMainWindow::UpdateSlice(int slicer, int slice)
{
// DD("vvMainWindow::UpdateSlice");
-// DD(slicer);
-// DD(slice);
+ // DD(slicer);
+ // DD(slice);
if (slicer == 0) {
// if (slice != NOVerticalSlider->value())
NOVerticalSlider->setValue(slice);
//------------------------------------------------------------------------------
-void vvMainWindow::UpdateTSlice(int slicer, int slice)
+void vvMainWindow::UpdateTSlice(int slicer, int slice, int code)
{
+ //FusionSequence: the slider value should be updated for slicers which show the same sequence as requested
+ bool doUpdate=false;
+ if (code==-1) doUpdate=true;
+ else {
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (DataTree->topLevelItem(i)->data(slicer+1,Qt::CheckStateRole).toInt() > 1) {
+ //i is the active SlicerManager
+ if (mSlicerManagers[i]->GetFusionSequenceInvolvmentCode()==code) doUpdate=true;
+ break;
+ }
+ }
+ }
+ if (!doUpdate) return;
+
switch (slicer) {
case 0:
+ if (NOHorizontalSlider->value()==slice) return;
NOHorizontalSlider->setValue(slice);
break;
case 1:
+ if (NEHorizontalSlider->value()==slice) return;
NEHorizontalSlider->setValue(slice);
break;
case 2:
+ if (SOHorizontalSlider->value()==slice) return;
SOHorizontalSlider->setValue(slice);
break;
case 3:
+ if (SEHorizontalSlider->value()==slice) return;
SEHorizontalSlider->setValue(slice);
break;
}
// Select filename base
QString filename = QFileDialog::getSaveFileName(this,
- tr("Save As (filename will be completed by slice number)"),
- itksys::SystemTools::GetFilenamePath(mSlicerManagers[index]->GetFileName()).c_str(),
- "Images( *.png);;Images( *.jpg)");
+ tr("Save As (filename will be completed by slice number)"),
+ itksys::SystemTools::GetFilenamePath(mSlicerManagers[index]->GetFileName()).c_str(),
+ "Images( *.png);;Images( *.jpg)");
// Loop on slices
for(int i=0; i<nbSlices; i++) {
windowToImageFilter->SetMagnification(1);
windowToImageFilter->SetInputBufferTypeToRGBA(); //also record the alpha (transparency) channel
windowToImageFilter->Update();
-
+
vtkSmartPointer<vtkPNGWriter> writer = vtkSmartPointer<vtkPNGWriter>::New();
std::string fn = itksys::SystemTools::GetFilenameWithoutLastExtension(filename.toStdString());
std::string num = clitk::toString(i);
int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
QString fileName = QFileDialog::getSaveFileName(this,
- tr("Save As"),
- itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
- Extensions);
+ tr("Save As"),
+ itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
+ Extensions);
if (!fileName.isEmpty()) {
vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
// FPS
bool ok;
int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
- tr("FPS:"), 5, 0, 1000, 1, &ok);
+ tr("FPS:"), 5, 0, 1000, 1, &ok);
if(ok)
gif->SetRate(fps);
// Loops
int loops = QInputDialog::getInteger(this, tr("Loops"),
- tr("Number of loops (0 means infinite):"), 0, 0, 1000000000, 1, &ok);
+ tr("Number of loops (0 means infinite):"), 0, 0, 1000000000, 1, &ok);
if(ok)
gif->SetLoops(loops);
mpg->SetQuality(2);
bool ok;
int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
- tr("FPS:"), 5, 0, 1024, 1, &ok);
+ tr("FPS:"), 5, 0, 1024, 1, &ok);
if(!ok)
fps = 5;
mpg->SetRate(fps);
mpg->SetQuality(2);
bool ok;
int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
- tr("FPS:"), 5, 0, 1024, 1, &ok);
+ tr("FPS:"), 5, 0, 1024, 1, &ok);
if(!ok)
fps = 5;
mpg->SetRate(fps);
has_temporal=true;
break;
}
- if (has_temporal) {
- playMode = 1;
- playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
- QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
- }
+ if (has_temporal) {
+ playMode = 1;
+ playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
+ QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
+ }
}
}
//------------------------------------------------------------------------------
for (int i=0; i<image_number; i++)
for (int j=0; j<4; j++)
if (mSlicerManagers[i]->GetSlicer(0)->GetTMax() > 0 &&
- DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
- mSlicerManagers[i]->SetNextTSlice(j);
- break;
+ DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
+ mSlicerManagers[i]->SetNextTSlice(j);
+ break;
}
- QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
+ QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
}
}
//------------------------------------------------------------------------------
for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
vvSlicerManager * v = mSlicerManagers[l];
if (v->GetBaseFileName() ==
- vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
- number = std::max(number, v->GetBaseFileNameNumber()+1);
+ vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
+ number = std::max(number, v->GetBaseFileNameNumber()+1);
}
}
return number;
cButton->setColumn(COLUMN_CLOSE_IMAGE);
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
rButton->setEnabled(0);
connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
DataTree->addTopLevelItem(item);
DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
mSlicerManagers.back()->SetId(id.toStdString());
linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
- , id.toStdString());
+ , id.toStdString());
connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
- this, SLOT(CurrentImageChanged(std::string)));
+ this, SLOT(CurrentImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
- this, SLOT(CurrentPickedImageChanged(std::string)));
+ this, SLOT(CurrentPickedImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
- this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
+ this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
- this, SLOT(VectorChanged(int,double,double,double, double)));
+ this, SLOT(VectorChanged(int,double,double,double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
- this, SLOT(OverlayChanged(int,double,double)));
+ this, SLOT(OverlayChanged(int,double,double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
+ this, SLOT(FusionChanged(int,double)));
//connect(mSlicerManagers.back(), SIGNAL(UpdateFusionSequence(int, bool, unsigned int)),
- // this, SLOT(FusionSequenceChanged(int, bool, unsigned int)));
+ // this, SLOT(FusionSequenceChanged(int, bool, unsigned int)));
connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
- this,SLOT(WindowLevelChanged()));
+ this,SLOT(WindowLevelChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
- this,SLOT(UpdateSlice(int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(UpdateTSlice(int, int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(ImageInfoChanged()));
+ this,SLOT(UpdateSlice(int,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int, int)),
+ this,SLOT(UpdateTSlice(int, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int, int)),
+ this,SLOT(ImageInfoChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
- this,SLOT(UpdateSliceRange(int,int,int,int,int)));
+ this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
- this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
- this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
- this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
+ this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
-
+
UpdateTree();
qApp->processEvents();
git://git.creatis.insa-lyon.fr / clitk.git / commitdiff