TARGET_LINK_LIBRARIES(clitkAnisotropicDiffusion clitkCommon)
SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAnisotropicDiffusion)
+ WRAP_GGO(clitkChangeImageInfo_GGO_C clitkChangeImageInfo.ggo)
+ ADD_EXECUTABLE(clitkChangeImageInfo clitkChangeImageInfo.cxx
+ clitkChangeImageInfoGenericFilter.cxx
+ ${clitkChangeImageInfo_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkChangeImageInfo clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeImageInfo)
+
IF(CLITK_EXPERIMENTAL)
WRAP_GGO(clitkBinaryImageToMesh_GGO_C clitkBinaryImageToMesh.ggo)
ADD_EXECUTABLE(clitkBinaryImageToMesh clitkBinaryImageToMesh.cxx ${clitkBinaryImageToMesh_GGO_C})
--- /dev/null
+/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://www.centreleonberard.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
+
+ It is distributed under dual licence
+
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+===========================================================================**/
+
+// clitk
+#include "clitkChangeImageInfo_ggo.h"
+#include "clitkChangeImageInfoGenericFilter.h"
+
+//--------------------------------------------------------------------
+int main(int argc, char * argv[])
+{
+ // Init command line
+ GGO(clitkChangeImageInfo, args_info);
+ CLITK_INIT;
+
+ // Filter
+ typedef clitk::ChangeImageInfoGenericFilter FilterType;
+ FilterType::Pointer filter = FilterType::New();
+
+ filter->SetArgsInfo(args_info);
+
+ CLITK_TRY_CATCH_EXIT(filter->Update());
+
+ return EXIT_SUCCESS;
+} // This is the end, my friend
+//--------------------------------------------------------------------
--- /dev/null
+#File clitkChangeImageInfo.ggo
+package "clitkChangeImageInfo"
+version "1.0"
+purpose "Change the information (spacing, origin, direction...) of an image"
+
+option "config" - "Config file" string no
+option "verbose" v "Verbose" flag off
+option "imagetypes" - "Display allowed image types" flag off
+
+option "input" i "Input image filename" string yes
+option "output" o "Output image filename" string yes
+option "spacing" s "Spacing" double multiple no
+option "origin" - "Origin" double multiple no
+option "direction" d "Direction" double multiple no
--- /dev/null
+/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://www.centreleonberard.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
+
+ It is distributed under dual licence
+
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+===========================================================================**/
+#ifndef clitkChangeImageInfoGenericFilter_cxx
+#define clitkChangeImageInfoGenericFilter_cxx
+
+#include "clitkChangeImageInfoGenericFilter.h"
+
+// itk include
+#include <itkChangeInformationImageFilter.h>
+
+namespace clitk
+{
+
+//--------------------------------------------------------------------
+ChangeImageInfoGenericFilter::ChangeImageInfoGenericFilter():
+ ImageToImageGenericFilter<Self>("ChangeImageInfo")
+{
+ InitializeImageType<2>();
+ InitializeImageType<3>();
+ InitializeImageType<4>();
+}
+//--------------------------------------------------------------------
+
+//--------------------------------------------------------------------
+template<unsigned int Dim>
+void ChangeImageInfoGenericFilter::InitializeImageType()
+{
+ ADD_DEFAULT_IMAGE_TYPES(Dim);
+}
+//--------------------------------------------------------------------
+
+//--------------------------------------------------------------------
+void ChangeImageInfoGenericFilter::SetArgsInfo(const args_info_type & a)
+{
+ mArgsInfo=a;
+ if (mArgsInfo.verbose_given)
+ SetIOVerbose(mArgsInfo.verbose_flag);
+ if (mArgsInfo.imagetypes_given && mArgsInfo.imagetypes_flag)
+ this->PrintAvailableImageTypes();
+
+ if (mArgsInfo.input_given) {
+ SetInputFilename(mArgsInfo.input_arg);
+ }
+ if (mArgsInfo.output_given) {
+ SetOutputFilename(mArgsInfo.output_arg);
+ }
+}
+//--------------------------------------------------------------------
+
+//--------------------------------------------------------------------
+// Update with the number of dimensions and the pixeltype
+//--------------------------------------------------------------------
+template<class InputImageType>
+void
+ChangeImageInfoGenericFilter::UpdateWithInputImageType()
+{
+ // Reading input
+ typename InputImageType::Pointer input = this->template GetInput<InputImageType>(0);
+
+ // Main filter
+ typedef typename itk::ChangeInformationImageFilter<InputImageType> CIIFType;
+ typename CIIFType::Pointer ciif = CIIFType::New();
+ const unsigned int Dimension = InputImageType::ImageDimension;
+ ciif->SetInput(input);
+
+ // Direction
+ ciif->SetChangeDirection(mArgsInfo.direction_given);
+ if( ciif->GetChangeDirection() ) {
+ if(mArgsInfo.direction_given != Dimension*Dimension) {
+ std::cerr << "You must provide " << Dimension*Dimension
+ << " values for --direction."
+ << std::endl;
+ exit(1);
+ }
+ typename InputImageType::DirectionType dir;
+ for(unsigned int i=0; i<Dimension; i++)
+ for(unsigned int j=0; j<Dimension; j++)
+ dir[i][j] = mArgsInfo.direction_arg[i*Dimension+j];
+ ciif->SetOutputDirection(dir);
+ }
+
+ // Spacing
+ ciif->SetChangeSpacing(mArgsInfo.spacing_given);
+ if( ciif->GetChangeSpacing() ) {
+ if(mArgsInfo.spacing_given != Dimension) {
+ std::cerr << "You must provide " << Dimension
+ << " values for --spacing."
+ << std::endl;
+ exit(1);
+ }
+ typename InputImageType::SpacingType spacing;
+ for(unsigned int i=0; i<Dimension; i++)
+ spacing[i] = mArgsInfo.spacing_arg[i];
+ ciif->SetOutputSpacing(spacing);
+ }
+
+ // Origin
+ ciif->SetChangeOrigin(mArgsInfo.origin_given);
+ if( ciif->GetChangeOrigin() ) {
+ if(mArgsInfo.origin_given != Dimension) {
+ std::cerr << "You must provide " << Dimension
+ << " values for --origin."
+ << std::endl;
+ exit(1);
+ }
+ typename InputImageType::PointType origin;
+ for(unsigned int i=0; i<Dimension; i++)
+ origin[i] = mArgsInfo.origin_arg[i];
+ ciif->SetOutputOrigin(origin);
+ }
+
+ ciif->Update();
+ this->template SetNextOutput<InputImageType>(ciif->GetOutput());
+}
+//--------------------------------------------------------------------
+
+}//end clitk
+
+#endif //#define clitkChangeImageInfoGenericFilter_cxx
--- /dev/null
+/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://www.centreleonberard.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
+
+ It is distributed under dual licence
+
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+===========================================================================**/
+
+#ifndef clitkChangeImageInfoGenericFilter_h
+#define clitkChangeImageInfoGenericFilter_h
+
+#include "clitkIO.h"
+#include "clitkImageToImageGenericFilter.h"
+#include "clitkChangeImageInfo_ggo.h"
+
+//--------------------------------------------------------------------
+namespace clitk
+{
+ class ITK_EXPORT ChangeImageInfoGenericFilter:
+ public ImageToImageGenericFilter<ChangeImageInfoGenericFilter>
+ {
+ public:
+ //--------------------------------------------------------------------
+ typedef ChangeImageInfoGenericFilter Self;
+ typedef itk::SmartPointer<Self> Pointer;
+ typedef itk::SmartPointer<const Self> ConstPointer;
+ typedef args_info_clitkChangeImageInfo args_info_type;
+
+ //--------------------------------------------------------------------
+ // Method for creation through the object factory
+ // and Run-time type information (and related methods)
+ itkNewMacro(Self);
+ itkTypeMacro(ChangeImageInfoGenericFilter, LightObject);
+
+ //--------------------------------------------------------------------
+ void SetArgsInfo(const args_info_type & a);
+
+ //--------------------------------------------------------------------
+ // Main function called each time the filter is updated
+ template<class InputImageType>
+ void UpdateWithInputImageType();
+
+ protected:
+ ChangeImageInfoGenericFilter();
+ template<unsigned int Dim> void InitializeImageType();
+ args_info_type mArgsInfo;
+ }; // end class
+ //--------------------------------------------------------------------
+} // end namespace clitk
+//--------------------------------------------------------------------
+
+#endif // #define clitkChangeImageInfoGenericFilter_h
git://git.creatis.insa-lyon.fr / clitk.git / commitdiff