Simplification of options

diff --git a/segmentation/clitkExtractLymphStations.ggo b/segmentation/clitkExtractLymphStations.ggo
index 313851473863866fbd27033961ef12deff6073b3..9fd52f892a780bc2137aa6fa88b15f50ff8d6b8f 100644 (file)
--- a/segmentation/clitkExtractLymphStations.ggo
+++ b/segmentation/clitkExtractLymphStations.ggo
@@ -3,50 +3,44 @@ package "clitkExtractLymphStations"
 version "1.0"
 purpose "Extract LymphStations with help of TODO"
 
-option "config"                -  "Config file"                  string        no
-option "imagetypes"     -  "Display allowed image types"  flag          off
-option "verbose"        v  "Verbose"                     flag          off
-option "verboseStep"    -  "Verbose each step"           flag          off
-option "writeStep"      w  "Write image at each step"    flag          off
-option "verboseOption"  -  "Display options values"       flag          off
-option "verboseWarningOff" -  "Do not display warning"    flag          off
-option "verboseMemory"  -  "Display memory usage"         flag          off
+option "config" - "Config file" string no
+option "imagetypes" - "Display allowed image types" flag off
+option "verbose" v "Verbose" flag off
+option "verboseStep" - "Verbose each step" flag off
+option "writeStep" w "Write image at each step" flag off
+option "verboseOption" - "Display options values" flag off
+option "verboseWarningOff" - "Do not display warning" flag off
+option "verboseMemory" - "Display memory usage" flag off
 
 section "I/O"
 
-option "afdb"          a       "Input Anatomical Feature DB"     string        no
-option "input"         i       "Input filename"                  string        no
-option "output"        o       "Output lungs mask filename"      string        no
-option "station"       -       "Force to compute station even if already exist in the DB"      string  no multiple
-option "nosupport"     -        "Do not recompute the station supports if already available"   flag off
+option "afdb" a "Input Anatomical Feature DB" string no
+option "input" i "Input filename" string no
+option "output" o "Output lungs mask filename" string no
 
+section "Options for all stations"
+option "station" - "Force to compute station even if already exist in the DB" string no multiple
+option "nosupport" - "Do not recompute the station supports if already available" flag off
+option "relpos" - "List of filenames for relativeposition operations" string no multiple
 
 section "Options for Station 3A"
-option "S3A_ft_SVC"              - "Fuzzy Threshold for NotPost to SVC"         double default="0.5" no 
-option "S3A_ft_Bones"            - "Fuzzy Threshold for Post to Bones"          double default="0.5" no 
-option "S3A_t_Bones"             - "Binary HU Threshold for bones"              double default="250" no 
-option "S3A_ft_Aorta"            - "Fuzzy Threshold for NotPost to Aorta"       double default="0.5" no 
-option "S3A_ft_SubclavianArtery" - "Fuzzy Threshold for Ant to SubclavianArtery" double default="0.2" no 
+
+section "Options for Station 2RL"
+
+section "Options for Station 1RL"
 
 
 section "Options for Station 8"
-option "S8_esophagusDilatationForAnt"   - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
+option "S8_esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
 option "S8_esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple
-option "S8_ft_Esophagus"                - "Fuzzy Threshold for 'Post' to dilated Esophagus" double default="0.5" no 
+option "S8_ft_Esophagus" - "Fuzzy Threshold for 'Post' to dilated Esophagus" double default="0.5" no 
 
 section "Options for Station 7"
-option "S7_ft_Bronchi"                    - "Fuzzy Threshold for Left/Right bronchi" double default="0.1" no 
-option "S7_ft_LeftSuperiorPulmonaryVein"  - "Fuzzy Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no 
+option "S7_ft_Bronchi" - "Fuzzy Threshold for Left/Right bronchi" double default="0.1" no 
+option "S7_ft_LeftSuperiorPulmonaryVein" - "Fuzzy Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no 
 option "S7_ft_RightSuperiorPulmonaryVein" - "Fuzzy Threshold for RightSuperiorPulmonaryVein" double default="0.2" no 
-option "S7_ft_RightPulmonaryArtery"       - "Fuzzy Threshold for RightPulmonaryArtery" double default="0.3" no 
-option "S7_ft_LeftPulmonaryArtery"        - "Fuzzy Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no 
-option "S7_ft_SVC"                        - "Fuzzy Threshold for SVC" double default="0.2" no 
-option "S7_UseMostInferiorPartOnly"    - "Inferior separation with S8."  flag off
+option "S7_ft_RightPulmonaryArtery" - "Fuzzy Threshold for RightPulmonaryArtery" double default="0.3" no 
+option "S7_ft_LeftPulmonaryArtery" - "Fuzzy Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no 
+option "S7_ft_SVC" - "Fuzzy Threshold for SVC" double default="0.2" no 
+option "S7_UseMostInferiorPartOnly" - "Inferior separation with S8." flag off
 
-section "Options for Station 2RL"
-option "S2RL_ft_CommonCarotidArtery"   - "Threshold for NotAntTo to CommonCarotidArtery"   double default="0.7" no 
-option "S2RL_ft_BrachioCephalicTrunk"  - "Threshold for NotAntTo to BrachioCephalicTrunk"  double default="0.7" no 
-option "S2RL_ft_BrachioCephalicVein"   - "Threshold for NotAntTo to BrachioCephalicVein"   double default="0.3" no 
-option "S2RL_ft_Aorta"                 - "Threshold for RightTo  to Aorta"                 double default="0.7" no 
-option "S2RL_ft_SubclavianArteryRight" - "Threshold for NotLeft  to SubclavianArteryRight" double default="0.5" no 
-option "S2RL_ft_SubclavianArteryLeft"  - "Threshold for NotRight to SubclavianArteryLeft"  double default="0.8" no