--- /dev/null
+/*=========================================================================
+
+ Program: gdcm
+ Module: $RCSfile: exOverlaysDCM.cxx,v $
+ Language: C++
+ Date: $Date: 2005/12/09 10:17:52 $
+ Version: $Revision: 1.1 $
+
+ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
+ l'Image). All rights reserved. See Doc/License.txt or
+ http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the above copyright notices for more information.
+
+=========================================================================*/
+#include "gdcmFile.h"
+#include "gdcmFileHelper.h"
+#include "gdcmCommon.h"
+#include "gdcmDebug.h"
+#include "gdcmDocEntry.h"
+#include "gdcmDataEntry.h"
+
+#include <iostream>
+#include <stdio.h> // for fseek... FIXME
+#include <stdlib.h> // for atoi
+
+ // WARNING :
+ // unfinished : DO NOT to be used as is !
+
+
+int main(int argc, char *argv[])
+{
+ gdcm::File *f;
+
+ //gdcm::Debug::DebugOn();
+
+ std::cout << "------------------------------------------------" << std::endl;
+ std::cout << "Gets the 'Overlays' from a full gdcm-readable DCM image "
+ << "uncompressed image" << std::endl;
+ std::cout << "Writes them in a DicomV3 file named 'gdcmOverlay.dcm'"
+ << std::endl;
+ std::cout << "------------------------------------------------" << std::endl;
+
+ std::string fileName;
+ if( argc > 1 )
+ fileName = argv[1];
+ else
+ fileName = "SIEMENS_GBS_III-16-ACR_NEMA_1.acr";
+
+ std::cout << fileName << std::endl;
+// ============================================================
+// Read the input image.
+// ============================================================
+
+ //std::cout << argv[1] << std::endl;
+
+ f = gdcm::File::New( );
+
+ f->SetLoadMode(gdcm::LD_ALL);
+ f->SetFileName( fileName );
+ f->AddForceLoadElement(0x6000,0x3000); // Overlay Data
+ bool res = f->Load();
+
+ if( gdcm::Debug::GetDebugFlag() )
+ {
+ std::cout << "---------------------------------------------" << std::endl;
+ f->Print();
+ std::cout << "---------------------------------------------" << std::endl;
+ }
+ if (!res) {
+ std::cout << "Sorry, " << fileName <<" not a gdcm-readable "
+ << "DICOM / ACR File"
+ <<std::endl;
+ f->Delete();
+ return 0;
+ }
+ std::cout << " ... is readable " << std::endl;
+
+// ============================================================
+// Check whether image contains Overlays ACR-NEMA style.
+// ============================================================
+
+ int bitsAllocated = f->GetBitsAllocated();
+
+ gdcm::DataEntry *e = f->GetDataEntry(0x6000, 0x3000);
+
+ if (e == 0)
+ {
+ std::cout << " Image doesn't contain any Overlay " << std::endl;
+ f->Delete();
+ return 0;
+ }
+
+ std::cout << " File is read! " << std::endl;
+
+// ============================================================
+// Get usefull info from FileHelper.
+// ============================================================
+
+
+ uint32_t overlayPixelLength = e->GetLength();
+
+/*
+ if ( overlayPixelLength != (size_t)nx*ny*sizeof( uint16_t) )
+ {
+ std::cout << "Sorry, Pixels of" << fileName << " are not "
+ << "readable. expected length :" << nx*ny*sizeof( uint16_t)
+ << " " << "read length : " << overlayPixelLength
+ << std::endl;
+ f->Delete();
+ delete pixels;
+ return 0;
+ }
+ else
+ {
+ std::cout << "Pixels read as expected : length = " << lgt << std::endl;
+ }
+*/
+ uint32_t nx = f->GetXSize();
+ uint32_t ny = f->GetYSize();
+
+ uint8_t *overlayPixelArea = (uint8_t *)(e->GetBinArea());
+
+ // should check overlayPixelLength == nx*ny/8 !)
+
+ uint8_t *overlayPixelImage = new uint8_t[nx*ny];// uint8 is enough to hold 1 bit !
+
+ uint16_t m;
+ for (unsigned int j=0; j<overlayPixelLength; j++)
+ {
+ if (overlayPixelArea[j] != 0)
+ {
+ std::cout << "j : " << std::dec << j << " Ox(" << std::hex <<(int)overlayPixelArea[j]
+ << ")" << std::endl;
+ for (unsigned int k=0; k<8; k++)
+ {
+ m = overlayPixelArea[j]<<k;
+ //printf("m : %04x ", m);
+ m = m & 0x00ff;
+ //printf(" : %04x \n", m);
+ overlayPixelImage[j*8 +k] = ( m > 127)?255:0;
+
+ printf("%04x ", overlayPixelImage[j*8 +k]);
+ }
+ std::cout << std::endl;
+ }
+ }
+
+
+ if( gdcm::Debug::GetDebugFlag() )
+ std::cout << "About to built empty file" << std::endl;
+
+ gdcm::File *fileToBuild = gdcm::File::New();
+
+ if( gdcm::Debug::GetDebugFlag() )
+ std::cout << "Finish to built empty file" << std::endl;
+
+ std::ostringstream str;
+ str.str("");
+ str << nx;
+ fileToBuild->InsertEntryString(str.str(),0x0028,0x0011); // Columns
+ str.str("");
+ str << ny;
+ fileToBuild->InsertEntryString(str.str(),0x0028,0x0010); // Rows
+
+ fileToBuild->InsertEntryString("8",0x0028,0x0100); // Bits Allocated
+ fileToBuild->InsertEntryString("8",0x0028,0x0101); // Bits Stored
+ fileToBuild->InsertEntryString("7",0x0028,0x0102); // High Bit
+ fileToBuild->InsertEntryString("0",0x0028,0x0103); // Pixel Representation
+ fileToBuild->InsertEntryString("1",0x0028,0x0002); // Samples per Pixel
+
+ fileToBuild->InsertEntryString("MONOCHROME2 ",0x0028,0x0004);
+ // Other mandatory fields will be set automatically,
+ // just before Write(), by FileHelper::CheckMandatoryElements()
+
+ if( gdcm::Debug::GetDebugFlag() )
+ std::cout << "-------------About to built FileHelper" << std::endl;
+
+ gdcm::FileHelper *fh = gdcm::FileHelper::New(fileToBuild);
+
+ if( gdcm::Debug::GetDebugFlag() )
+ std::cout << "-------------Finish to built FileHelper" << std::endl;
+
+ fh->SetImageData(overlayPixelImage,nx*ny);
+ fh->SetWriteTypeToDcmExplVR();
+
+ str.str("");
+ str<<"gdcmOverlay" << ".dcm";
+ // Write the current 'overlay' file
+
+ if( !fh->Write(str.str()) )
+ {
+ std::cout << "Failed\n"
+ << "File in unwrittable\n";
+ fh->Delete();
+ if (fileToBuild)
+ fileToBuild->Delete();
+ delete overlayPixelImage;
+
+ return 0;
+ }
+ else
+ {
+ std::cout << "File written successfully" << std::endl;
+ }
+
+ if (f)
+ fh->Delete();
+ if (fileToBuild)
+ fileToBuild->Delete();
+ f->Delete();
+ delete overlayPixelImage;
+
+
+ return 0;
+}
+
git://git.creatis.insa-lyon.fr / gdcm.git / commitdiff