Merge branch 'sandbox' of ssh://git.creatis.insa-lyon.fr/FrontAlgorithms into sandbox

diff --combined appli/CTBronchi/Process.sh
index 10df8d58350e17e30557c2462aac3d94279c59bf,a6cb49bab4e08026992a7d52083813e61fc83977..618a3bc7cc8c4bfabb7d180435aa1cab02f34cf7
--- 1/appli/CTBronchi/Process.sh
--- 2/appli/CTBronchi/Process.sh
+++ b/appli/CTBronchi/Process.sh
@@@ -67,8 -67,12 +67,12 @@@ while [[ "$#" -gt 0 ]]; d
          mori_delta="$2"
          shift
          ;;
-         -labels_vesselness_thr)
-         labels_vesselness_thr="$2"
+         -slicebyslice_vesselness_thr)
+         slicebyslice_vesselness_thr="$2"
+         shift
+         ;;
+         -fast_vesselness_thr)
+         fast_vesselness_thr="$2"
          shift
          ;;
          -slice_by_slice_vesselness_thr)
@@@ -107,14 -111,14 +111,14 @@@ if [ -z "$input" ] || [ -z "$seed" ] ; 
  fi
  
  base_dir=`dirname $input | xargs realpath`
 -base_name=$base_dir/`basename $input .mhd`
 +base_name=$base_dir/`basename $input .mha`
  
 -vesselness=$base_name"_vesselness.mhd"
 -mori=$base_name"_mori.mhd"
 +vesselness=$base_name"_vesselness.mha"
 +mori=$base_name"_mori.mha"
  mori_signal=$base_name"_mori_signal.txt"
 -labels=$base_name"_labels.mhd"
 -fastrw=$base_name"_fastrw.mhd"
 -slicerw=$base_name"_slicerw.mhd"
 +labels=$base_name"_labels.mha"
 +fastrw=$base_name"_fastrw.mha"
 +slicerw=$base_name"_slicerw.mha"
  
  echo "************************************************"
  (>&2 echo "Processing $input... ")
@@@ -146,7 -150,7 +150,7 @@@ if [ ! -f $labels ] || [ -n "$force" ] 
          -l $mori \
          -v $vesselness \
          -o $labels \
-         -a $labels_vesselness_thr \
+         -a $fast_vesselness_thr \
          -u $labels_upper_thr
  fi