Romulo:

- Corrected bug in --noAutoCrop function, both in ggo file and source code

diff --git a/segmentation/clitkExtractBones.ggo b/segmentation/clitkExtractBones.ggo
index d7a737c903a4c5e4a2e29d6bf2e68ccf841d43d4..d69f92fb6fcfab221fe2bbb341bcc9ccbf589d9b 100644 (file)
--- a/segmentation/clitkExtractBones.ggo
+++ b/segmentation/clitkExtractBones.ggo
@@ -45,4 +45,4 @@ section "Fill holes"
 option "doNotFillHoles"                -  "Do not fill holes if set"                 flag on
 option "dir"                   d  "Directions (axes) to perform filling (defaults to 2,1,0)"   int multiple no
 
-option "noAutoCrop"    -       "If set : do no crop final mask to BoundingBox"                         flag    on
+option "noAutoCrop"    -       "If set : do no crop final mask to BoundingBox"                         flag    off

diff --git a/segmentation/clitkExtractPatient.ggo b/segmentation/clitkExtractPatient.ggo
index 9aed69e1beb59d3cafff65d0121ade3b6ba8e634..5c2861dfbae5a4550487ac9b8311ea872f324d11 100644 (file)
--- a/segmentation/clitkExtractPatient.ggo
+++ b/segmentation/clitkExtractPatient.ggo
@@ -50,6 +50,6 @@ option  "remove"      -               "Labels to remove"                      int     no      multiple
 section "Clean-up"
 
 option "openClose"     -       "Perform morphological opening and closing with unit radius"    flag    off
-option "noAutoCrop"    -       "If set : do no crop final mask to BoundingBox"                         flag    on
+option "noAutoCrop"    -       "If set : do no crop final mask to BoundingBox"                         flag    off
 
 

diff --git a/segmentation/clitkExtractPatientGenericFilter.txx b/segmentation/clitkExtractPatientGenericFilter.txx
index 9435288d1e262519c03ccde50cb0d0fd2b2d8c35..8cde3f5be4e85d8bd4dad97b73481d43299f74bf 100644 (file)
--- a/segmentation/clitkExtractPatientGenericFilter.txx
+++ b/segmentation/clitkExtractPatientGenericFilter.txx
@@ -68,7 +68,9 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   f->SetVerboseWarningFlag(!mArgsInfo.verboseWarningOff_flag);
   f->SetVerboseMemoryFlag(mArgsInfo.verboseMemory_flag);
 
-  f->SetAFDBFilename(mArgsInfo.afdb_arg);  
+  if (mArgsInfo.afdb_given)
+    f->SetAFDBFilename(mArgsInfo.afdb_arg);  
+  
   f->SetOutputPatientFilename(mArgsInfo.output_arg);
 
   f->SetUpperThreshold(mArgsInfo.upper_arg);