with matrix arg option

diff --git a/registration/AffineReg.txt b/registration/AffineReg.txt
index 12fee38acbb1c5e03288c69f5a22463589e021ad..d15b528ae8ff6f47eff1da53a08c87a48f30d8bd 100644 (file)
--- a/registration/AffineReg.txt
+++ b/registration/AffineReg.txt
@@ -1,32 +1,18 @@
-#***************************************************************
-#Configuration File for AffineRegistration Filter
-#***************************************************************
-referenceMask=1
+threads=3
 reference=0
 target=0
-#output=0
-#checker_after=0
-#checker_before=0
-#after=0
-#before=0
-threads=3
-#normalize=false
-blur=0.0
-#targetMask=0
-levels=2
-#moment=true
-intThreshold=0.0
+matrix=/home/bharth/bin/writematrix.txt
+interp=1
+transform=2
 transX=0.0
 transY=0.0
 transZ=0.0
-transform=1
-#gradient=0 //gengetopt doesnt seem to accept flags in config files
-interp=1
-#interpOrder=3
-#interpSF=20
 metric=1
 samples=1
+intThreshold=0.0
 stdDev=0.4
+blur=0.0
+optimizer=1
 step=2.0
 relax=0.7
 valueTol=0.01
@@ -39,13 +25,8 @@ maxLineIt=50
 maxEval=500
 maxCorr=5
 selectBound=0
+rWeight=50.0
+tWeight=1.0
+levels=2
 inc=1.2
 dec=4
-optimizer=1
-#initMatrix=0
-tWeight=1.0
-rWeight=50.0
-#matrix=0
-
-
-